Wall clock time and date at job start Wed Apr 1 2020 02:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46992 * 2 1 4 4 C 1.37097 * 120.00268 * 274.20512 * 3 2 1 5 5 H 1.07996 * 120.00518 * 185.01055 * 4 3 2 6 6 C 1.38958 * 119.99943 * 5.01444 * 4 3 2 7 7 N 1.31405 * 119.99629 * 14.17643 * 6 4 3 8 8 Si 1.86794 * 120.00114 * 194.18447 * 6 4 3 9 9 H 1.48499 * 109.47520 * 59.99273 * 8 6 4 10 10 H 1.48498 * 109.47329 * 179.97438 * 8 6 4 11 11 H 1.48510 * 109.46912 * 299.99609 * 8 6 4 12 12 C 1.34775 * 120.00150 * 94.20242 * 3 2 1 13 13 O 1.21294 * 120.00035 * 4.98453 * 12 3 2 14 14 C 1.50703 * 120.00447 * 184.97749 * 12 3 2 15 15 H 1.09005 * 110.54766 * 51.68156 * 14 12 3 16 16 C 1.54990 * 110.61627 * 288.80581 * 14 12 3 17 17 C 1.54810 * 102.08990 * 204.31460 * 16 14 12 18 18 C 1.54102 * 104.19058 * 20.88032 * 17 16 14 19 19 H 1.08998 * 109.87946 * 242.45594 * 18 17 16 20 20 C 1.52995 * 109.87862 * 121.45143 * 18 17 16 21 21 N 1.46500 * 109.46966 * 180.02562 * 20 18 17 22 22 C 1.34780 * 120.00131 * 179.97438 * 21 20 18 23 23 O 1.21514 * 119.99807 * 0.02562 * 22 21 20 24 24 O 1.34636 * 119.99798 * 180.27355 * 22 21 20 25 25 C 1.45208 * 116.99643 * 179.72816 * 24 22 21 26 26 C 1.52997 * 109.47204 * 60.00194 * 25 24 22 27 27 C 1.52993 * 109.46925 * 180.02562 * 25 24 22 28 28 C 1.53003 * 109.46877 * 300.00184 * 25 24 22 29 29 O 1.43746 * 107.28982 * 2.03083 * 18 17 16 30 30 H 1.09004 * 109.47002 * 63.99746 * 1 2 3 31 31 H 1.08995 * 109.46852 * 183.99171 * 1 2 3 32 32 H 1.08990 * 109.47027 * 303.99738 * 1 2 3 33 33 H 1.08997 * 109.46904 * 240.00388 * 2 1 3 34 34 H 1.09000 * 109.46933 * 119.99938 * 2 1 3 35 35 H 0.97008 * 120.00035 * 179.97438 * 7 6 4 36 36 H 1.08999 * 110.91160 * 86.11981 * 16 14 12 37 37 H 1.09003 * 110.91297 * 322.51231 * 16 14 12 38 38 H 1.09000 * 110.48949 * 262.20174 * 17 16 14 39 39 H 1.09004 * 110.60325 * 139.61588 * 17 16 14 40 40 H 1.09002 * 109.47366 * 60.00377 * 20 18 17 41 41 H 1.09002 * 109.47764 * 300.00006 * 20 18 17 42 42 H 0.97001 * 120.00151 * 0.02562 * 21 20 18 43 43 H 1.09003 * 109.46478 * 60.00236 * 26 25 24 44 44 H 1.08995 * 109.47255 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.47143 * 299.99828 * 26 25 24 46 46 H 1.09001 * 109.47675 * 60.00213 * 27 25 24 47 47 H 1.09004 * 109.47232 * 179.97438 * 27 25 24 48 48 H 1.08995 * 109.47361 * 299.99973 * 27 25 24 49 49 H 1.08999 * 109.46962 * 60.00567 * 28 25 24 50 50 H 1.09004 * 109.46743 * 180.02562 * 28 25 24 51 51 H 1.09002 * 109.47295 * 300.00091 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1648 2.0566 -1.1841 5 1 2.6004 3.0448 -1.1919 6 6 1.7526 1.4697 -2.3743 7 7 0.9795 0.4074 -2.3497 8 14 2.2977 2.1906 -4.0090 9 1 3.7802 2.1659 -4.0913 10 1 1.7272 1.3864 -5.1195 11 1 1.8193 3.5925 -4.1159 12 6 2.3236 1.9881 1.1640 13 8 2.2809 1.3636 2.2030 14 6 2.7182 3.4425 1.1749 15 1 1.9808 4.0430 0.6422 16 6 4.1261 3.6306 0.5547 17 6 4.5929 4.9553 1.2058 18 6 3.7145 5.0874 2.4650 19 1 3.0973 5.9829 2.3941 20 6 4.5992 5.1628 3.7110 21 7 3.7555 5.2875 4.9021 22 6 4.3209 5.3702 6.1228 23 8 5.5305 5.3419 6.2352 24 8 3.5454 5.4793 7.2179 25 6 4.2225 5.5578 8.5000 26 6 5.1365 6.7846 8.5198 27 6 3.1850 5.6761 9.6182 28 6 5.0594 4.2948 8.7129 29 8 2.8799 3.9187 2.5282 30 1 -0.3633 0.4506 -0.9237 31 1 -0.3633 -1.0251 0.0715 32 1 -0.3633 0.5746 0.8519 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.6914 -0.0022 -3.1805 36 1 4.0637 3.7308 -0.5289 37 1 4.7859 2.8080 0.8305 38 1 4.4207 5.7937 0.5309 39 1 5.6464 4.8977 1.4798 40 1 5.2561 6.0296 3.6382 41 1 5.2004 4.2566 3.7853 42 1 2.7899 5.3098 4.8124 43 1 4.5402 7.6843 8.3681 44 1 5.6452 6.8433 9.4820 45 1 5.8756 6.6998 7.7232 46 1 2.5341 4.8019 9.6041 47 1 3.6933 5.7346 10.5808 48 1 2.5885 6.5757 9.4667 49 1 5.7985 4.2101 7.9163 50 1 5.5673 4.3535 9.6756 51 1 4.4082 3.4207 8.6988 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495649157.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:02 Heat of formation + Delta-G solvation = -165.059559 kcal Electronic energy + Delta-G solvation = -31270.815506 eV Core-core repulsion = 26977.551154 eV Total energy + Delta-G solvation = -4293.264351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.82695 -41.19577 -39.68480 -38.33780 -36.98706 -35.91830 -34.88823 -33.53859 -33.11857 -32.23753 -30.71918 -28.35470 -28.28792 -27.32695 -26.65183 -24.42777 -23.26088 -22.75062 -22.21063 -21.06973 -20.92594 -19.29288 -18.89454 -18.27592 -17.70198 -17.46853 -17.08191 -16.62882 -16.50795 -16.17015 -16.01443 -15.66675 -15.37063 -15.23984 -14.97895 -14.51426 -14.44374 -14.39023 -14.04051 -13.77106 -13.63807 -13.34041 -13.08375 -13.04415 -12.89652 -12.85699 -12.84305 -12.77396 -12.69482 -12.50359 -12.45172 -12.39198 -12.23901 -12.05372 -11.92983 -11.70151 -11.54579 -11.38486 -11.11801 -10.80999 -10.77062 -10.24219 -10.15673 -9.73400 -8.14488 -5.82649 1.17838 1.47336 1.54532 1.62920 1.75927 1.95592 2.26473 2.52939 3.11776 3.17272 3.33755 3.58963 3.76050 3.76930 3.81087 3.95795 3.96533 4.11514 4.17005 4.31810 4.42564 4.50140 4.58683 4.62251 4.63325 4.67600 4.77131 4.77860 4.84688 4.85546 4.88389 4.90080 4.94607 4.98101 5.04626 5.12836 5.13879 5.19370 5.24468 5.29185 5.36859 5.42994 5.51046 5.57340 5.81866 5.91782 5.96635 6.37927 6.54107 7.15597 7.31994 7.60228 8.01093 8.75319 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.002348 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.527115 B =11921.935364 C =12849.067993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.135 3.865 3 N -0.444 5.444 4 C -0.353 4.353 5 H 0.124 0.876 6 C -0.009 4.009 7 N -0.883 5.883 8 Si 0.992 3.008 9 H -0.267 1.267 10 H -0.288 1.288 11 H -0.262 1.262 12 C 0.436 3.564 13 O -0.642 6.642 14 C 0.084 3.916 15 H 0.096 0.904 16 C -0.134 4.134 17 C -0.134 4.134 18 C 0.058 3.942 19 H 0.103 0.897 20 C 0.146 3.854 21 N -0.701 5.701 22 C 0.646 3.354 23 O -0.593 6.593 24 O -0.373 6.373 25 C 0.121 3.879 26 C -0.176 4.176 27 C -0.136 4.136 28 C -0.181 4.181 29 O -0.376 6.376 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.003 0.997 33 H 0.094 0.906 34 H 0.020 0.980 35 H 0.269 0.731 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.414 0.586 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.072 0.928 49 H 0.060 0.940 50 H 0.095 0.905 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 14.558 10.936 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.012 3.988 3 N -0.162 5.162 4 C -0.479 4.479 5 H 0.141 0.859 6 C -0.211 4.211 7 N -0.522 5.522 8 Si 0.816 3.184 9 H -0.192 1.192 10 H -0.214 1.214 11 H -0.186 1.186 12 C 0.225 3.775 13 O -0.531 6.531 14 C 0.024 3.976 15 H 0.114 0.886 16 C -0.172 4.172 17 C -0.171 4.171 18 C 0.000 4.000 19 H 0.120 0.880 20 C 0.023 3.977 21 N -0.360 5.360 22 C 0.399 3.601 23 O -0.485 6.485 24 O -0.288 6.288 25 C 0.085 3.915 26 C -0.233 4.233 27 C -0.193 4.193 28 C -0.239 4.239 29 O -0.295 6.295 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.022 0.978 33 H 0.112 0.888 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.133 0.867 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.072 0.928 42 H 0.249 0.751 43 H 0.083 0.917 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.124 0.876 48 H 0.091 0.909 49 H 0.079 0.921 50 H 0.113 0.887 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.462 14.002 11.597 19.295 hybrid contribution -0.424 -0.465 -0.920 1.114 sum 6.038 13.538 10.677 18.268 Atomic orbital electron populations 1.22057 0.95796 0.99802 1.00894 1.21282 0.95241 0.83163 0.99122 1.44016 1.54766 1.11999 1.05432 1.20319 1.41175 1.03255 0.83201 0.85881 1.26141 0.95035 0.97086 1.02796 1.70273 1.31153 1.22460 1.28318 0.84986 0.78719 0.78397 0.76295 1.19225 1.21397 1.18617 1.20423 0.84012 0.89831 0.83195 1.90506 1.61295 1.67691 1.33634 1.22662 0.99312 0.92018 0.83590 0.88628 1.23056 0.93481 0.98349 1.02325 1.22946 1.01033 0.97819 0.95352 1.23280 0.92308 0.89682 0.94753 0.87953 1.21661 0.92319 1.02753 0.80924 1.44710 1.11703 1.76444 1.03113 1.18222 0.83846 0.76083 0.81949 1.90867 1.13910 1.57206 1.86489 1.86327 1.40950 1.86066 1.15453 1.22461 0.93661 0.96636 0.78703 1.22446 1.00070 0.96293 1.04509 1.21889 0.98089 1.03444 0.95860 1.22488 1.00678 0.96522 1.04163 1.88975 1.70059 1.44390 1.26093 0.89225 0.93196 0.97771 0.88766 0.96128 0.92011 0.87656 0.92527 0.86662 0.88395 0.87630 0.92762 0.75053 0.91661 0.88887 0.91883 0.91814 0.87626 0.90937 0.92123 0.88651 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 9.62 71.98 0.69 -5.42 16 2 C 0.13 6.88 5.47 86.38 0.47 7.36 16 3 N -0.44 -22.45 2.63 -635.52 -1.67 -24.12 16 4 C -0.35 -16.43 8.95 84.04 0.75 -15.67 16 5 H 0.12 5.05 4.55 -2.91 -0.01 5.04 16 6 C -0.01 -0.42 5.22 84.93 0.44 0.02 16 7 N -0.88 -42.46 7.38 21.66 0.16 -42.30 16 8 Si 0.99 35.77 29.58 68.60 2.03 37.80 16 9 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 10 H -0.29 -10.61 7.11 99.48 0.71 -9.90 16 11 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 12 C 0.44 22.04 7.05 87.66 0.62 22.66 16 13 O -0.64 -37.63 16.08 15.01 0.24 -37.38 16 14 C 0.08 3.28 2.77 30.53 0.08 3.37 16 15 H 0.10 3.49 7.79 -2.38 -0.02 3.47 16 16 C -0.13 -4.15 5.89 31.89 0.19 -3.96 16 17 C -0.13 -2.83 6.64 31.58 0.21 -2.62 16 18 C 0.06 1.43 3.49 30.97 0.11 1.54 16 19 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 20 C 0.15 3.65 5.15 86.38 0.44 4.10 16 21 N -0.70 -19.02 5.48 -590.84 -3.24 -22.26 16 22 C 0.65 19.14 8.06 129.79 1.05 20.19 16 23 O -0.59 -19.49 11.88 19.80 0.24 -19.25 16 24 O -0.37 -10.06 9.94 -55.46 -0.55 -10.61 16 25 C 0.12 2.55 1.13 -10.80 -0.01 2.54 16 26 C -0.18 -3.30 8.37 71.98 0.60 -2.69 16 27 C -0.14 -1.96 8.85 71.98 0.64 -1.32 16 28 C -0.18 -3.96 8.37 71.98 0.60 -3.36 16 29 O -0.38 -14.05 10.34 -130.89 -1.35 -15.40 16 30 H 0.09 4.48 5.77 -2.39 -0.01 4.47 16 31 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.09 4.90 5.96 -2.39 -0.01 4.88 16 34 H 0.02 1.09 7.24 -2.39 -0.02 1.07 16 35 H 0.27 12.32 8.31 -92.70 -0.77 11.55 16 36 H 0.11 3.03 6.33 -2.39 -0.02 3.01 16 37 H 0.06 1.98 8.05 -2.39 -0.02 1.96 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.10 1.77 7.70 -2.39 -0.02 1.75 16 40 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.41 10.64 8.53 -92.71 -0.79 9.85 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 46 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.06 1.68 5.88 -2.39 -0.01 1.67 16 50 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 51 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -68.71 397.50 2.89 -65.82 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: 0.15 Total: 40.99 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 6.89 Total: 26.72 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -4.75 Total: -88.68 kcal Atomic # 8 Polarization: -81.22 SS G_CDS: -1.43 Total: -82.65 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Total: -68.71 2.89 -65.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495649157.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.241 kcal (2) G-P(sol) polarization free energy of solvation -68.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds