Wall clock time and date at job start Wed Apr 1 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46964 * 2 1 4 4 C 1.37096 * 120.00222 * 96.42696 * 3 2 1 5 5 H 1.08001 * 120.00180 * 222.27113 * 4 3 2 6 6 C 1.38955 * 119.99909 * 41.98705 * 4 3 2 7 7 N 1.31404 * 119.99845 * 8.46592 * 6 4 3 8 8 Si 1.86797 * 119.99998 * 188.46075 * 6 4 3 9 9 H 1.48498 * 109.47189 * 60.00656 * 8 6 4 10 10 H 1.48502 * 109.47203 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47500 * 300.00118 * 8 6 4 12 12 C 1.34778 * 120.00180 * 276.42246 * 3 2 1 13 13 O 1.21297 * 120.00091 * 175.77345 * 12 3 2 14 14 C 1.50704 * 119.99969 * 355.78048 * 12 3 2 15 15 H 1.08997 * 110.43377 * 342.78033 * 14 12 3 16 16 C 1.54812 * 110.48683 * 220.09154 * 14 12 3 17 17 C 1.54992 * 102.08930 * 220.43966 * 16 14 12 18 18 O 1.44384 * 103.49138 * 37.02495 * 17 16 14 19 19 C 1.43735 * 106.97390 * 319.93674 * 18 17 16 20 20 H 1.09001 * 109.88384 * 267.08772 * 19 18 17 21 21 C 1.53006 * 109.87965 * 145.93899 * 19 18 17 22 22 N 1.46497 * 109.47217 * 61.28119 * 21 19 18 23 23 C 1.34775 * 120.00365 * 180.02562 * 22 21 19 24 24 O 1.21510 * 119.99597 * 359.97438 * 23 22 21 25 25 O 1.34631 * 120.00121 * 180.02562 * 23 22 21 26 26 C 1.45199 * 116.99748 * 179.97438 * 25 23 22 27 27 C 1.53006 * 109.47412 * 59.99957 * 26 25 23 28 28 C 1.53002 * 109.47180 * 179.97438 * 26 25 23 29 29 C 1.53002 * 109.47492 * 299.99706 * 26 25 23 30 30 H 1.08997 * 109.47356 * 299.99899 * 1 2 3 31 31 H 1.09000 * 109.46973 * 59.99948 * 1 2 3 32 32 H 1.09003 * 109.46686 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46938 * 240.00401 * 2 1 3 34 34 H 1.08996 * 109.47248 * 119.99626 * 2 1 3 35 35 H 0.97007 * 120.00032 * 180.02562 * 7 6 4 36 36 H 1.09000 * 110.90786 * 338.64085 * 16 14 12 37 37 H 1.09004 * 110.90545 * 102.24345 * 16 14 12 38 38 H 1.08995 * 110.62353 * 278.52007 * 17 16 14 39 39 H 1.09005 * 110.61823 * 155.52412 * 17 16 14 40 40 H 1.08992 * 109.47193 * 181.28329 * 21 19 18 41 41 H 1.09003 * 109.46695 * 301.28358 * 21 19 18 42 42 H 0.97001 * 119.99725 * 359.97438 * 22 21 19 43 43 H 1.08995 * 109.47147 * 59.99549 * 27 26 25 44 44 H 1.08998 * 109.47464 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.46576 * 299.99885 * 27 26 25 46 46 H 1.09001 * 109.46862 * 60.00145 * 28 26 25 47 47 H 1.08999 * 109.47577 * 180.02562 * 28 26 25 48 48 H 1.09001 * 109.47421 * 300.00293 * 28 26 25 49 49 H 1.09000 * 109.46786 * 60.00192 * 29 26 25 50 50 H 1.08999 * 109.47218 * 180.02562 * 29 26 25 51 51 H 1.09001 * 109.47102 * 300.00193 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3721 1.9833 1.1798 5 1 2.0853 3.0068 1.3711 6 6 3.0946 1.2747 2.1320 7 7 3.5818 0.0899 1.8394 8 14 3.3734 2.0065 3.8279 9 1 2.0633 2.2530 4.4822 10 1 4.1678 1.0596 4.6512 11 1 4.1113 3.2887 3.6987 12 6 2.1198 2.0601 -1.1599 13 8 2.4506 3.2271 -1.1526 14 6 1.8222 1.3694 -2.4658 15 1 1.8411 0.2873 -2.3369 16 6 2.8343 1.8063 -3.5528 17 6 1.9273 1.9519 -4.8011 18 8 0.7008 2.4932 -4.2650 19 6 0.4566 1.8231 -3.0171 20 1 -0.1835 0.9562 -3.1808 21 6 -0.2086 2.7857 -2.0312 22 7 -1.4958 3.2277 -2.5733 23 6 -2.2634 4.0857 -1.8726 24 8 -1.8879 4.4924 -0.7908 25 8 -3.4465 4.4915 -2.3706 26 6 -4.2204 5.4157 -1.5611 27 6 -3.4110 6.6936 -1.3314 28 6 -5.5230 5.7609 -2.2857 29 6 -4.5425 4.7669 -0.2134 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.0859 -0.4049 2.5043 36 1 3.2960 2.7592 -3.2940 37 1 3.5920 1.0385 -3.7099 38 1 1.7491 0.9803 -5.2616 39 1 2.3701 2.6425 -5.5189 40 1 -0.3699 2.2779 -1.0804 41 1 0.4366 3.6505 -1.8764 42 1 -1.7953 2.9033 -3.4370 43 1 -3.1816 7.1558 -2.2915 44 1 -3.9917 7.3872 -0.7234 45 1 -2.4829 6.4480 -0.8154 46 1 -6.0998 4.8507 -2.4496 47 1 -6.1038 6.4550 -1.6782 48 1 -5.2933 6.2233 -3.2456 49 1 -3.6143 4.5213 0.3026 50 1 -5.1238 5.4605 0.3941 51 1 -5.1191 3.8565 -0.3770 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496030984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:22 Heat of formation + Delta-G solvation = -154.250648 kcal Electronic energy + Delta-G solvation = -32707.426147 eV Core-core repulsion = 28414.630505 eV Total energy + Delta-G solvation = -4292.795642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.65034 -40.07523 -37.80958 -37.16393 -35.01500 -34.61441 -33.82913 -32.40751 -31.48071 -30.03494 -29.43434 -27.46273 -27.36616 -26.14676 -24.72769 -22.59867 -22.47916 -21.60407 -21.39061 -19.93305 -18.57672 -17.85975 -17.13333 -16.69323 -16.34746 -16.10549 -15.74046 -15.59624 -15.19010 -14.76815 -14.71127 -14.32698 -14.27081 -13.94645 -13.62536 -13.25966 -13.12121 -12.77647 -12.59154 -12.54214 -12.18306 -12.12241 -12.05341 -11.90601 -11.86198 -11.76849 -11.46527 -11.37641 -11.29123 -11.14256 -11.06268 -10.96751 -10.87928 -10.58024 -10.38036 -10.31750 -10.28177 -10.05527 -9.83459 -9.60692 -8.90724 -8.83891 -8.40766 -7.42098 -6.29292 -4.05087 2.34256 3.11750 3.21820 3.26278 3.31084 3.68857 3.95011 4.13713 4.35465 4.63387 4.69756 4.73081 4.79141 4.88332 4.99122 5.15924 5.18888 5.31417 5.34790 5.38952 5.48481 5.51573 5.61687 5.63640 5.66592 5.70807 5.73520 5.85282 5.85514 5.89729 5.92130 6.07963 6.09932 6.20962 6.24116 6.28659 6.32429 6.43435 6.45041 6.52225 6.60340 6.70682 6.88222 6.99911 7.29122 7.59974 7.68066 8.30012 8.50274 8.65122 9.16812 9.36712 9.96351 10.73328 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009885 B = 0.003985 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.835170 B = 7024.754708 C = 8866.748735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 N -0.436 5.436 4 C -0.302 4.302 5 H 0.089 0.911 6 C 0.037 3.963 7 N -0.881 5.881 8 Si 0.923 3.077 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.471 3.529 13 O -0.570 6.570 14 C -0.140 4.140 15 H 0.101 0.899 16 C -0.138 4.138 17 C 0.050 3.950 18 O -0.370 6.370 19 C 0.086 3.914 20 H 0.076 0.924 21 C 0.123 3.877 22 N -0.703 5.703 23 C 0.645 3.355 24 O -0.560 6.560 25 O -0.369 6.369 26 C 0.136 3.864 27 C -0.185 4.185 28 C -0.139 4.139 29 C -0.184 4.184 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.118 0.882 35 H 0.268 0.732 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.404 0.596 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.068 0.932 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.707 1.058 -10.532 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.031 4.031 3 N -0.155 5.155 4 C -0.430 4.430 5 H 0.107 0.893 6 C -0.166 4.166 7 N -0.520 5.520 8 Si 0.749 3.251 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.258 3.742 13 O -0.453 6.453 14 C -0.162 4.162 15 H 0.119 0.881 16 C -0.176 4.176 17 C -0.027 4.027 18 O -0.289 6.289 19 C 0.027 3.973 20 H 0.094 0.906 21 C 0.001 3.999 22 N -0.362 5.362 23 C 0.398 3.602 24 O -0.449 6.449 25 O -0.284 6.284 26 C 0.100 3.900 27 C -0.242 4.242 28 C -0.196 4.196 29 C -0.241 4.241 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.238 0.762 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.109 0.891 50 H 0.087 0.913 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.426 1.896 -9.905 16.003 hybrid contribution 0.170 -0.292 0.568 0.661 sum -12.256 1.604 -9.336 15.490 Atomic orbital electron populations 1.22372 0.98481 1.00511 1.01594 1.21687 0.91310 0.85856 1.04201 1.43445 1.55463 1.11650 1.04946 1.19406 1.32353 0.98999 0.92239 0.89337 1.25442 0.94655 0.96084 1.00389 1.69734 1.34404 1.12778 1.35102 0.86057 0.78601 0.78908 0.81511 1.19833 1.20984 1.19704 1.19875 0.82013 0.87965 0.84356 1.90545 1.51540 1.16632 1.86554 1.22768 0.94540 1.02270 0.96631 0.88084 1.23089 0.97652 1.03927 0.92951 1.23545 0.84323 0.98598 0.96196 1.88857 1.42176 1.63178 1.34699 1.22795 0.95630 0.94281 0.84550 0.90634 1.22124 0.81768 1.00174 0.95811 1.44650 1.20475 1.47662 1.23364 1.18065 0.79782 0.79329 0.83049 1.90949 1.73572 1.59109 1.21226 1.86267 1.30617 1.61103 1.50444 1.22004 0.89958 0.87738 0.90348 1.22524 1.02814 0.96125 1.02711 1.21844 0.94509 1.02222 1.01035 1.22523 1.04262 1.00912 0.96435 0.92270 0.93906 0.92961 0.93455 0.86423 0.92182 0.88725 0.90142 0.92305 0.88967 0.88952 0.88132 0.76205 0.92273 0.91347 0.89092 0.91612 0.90328 0.91595 0.89083 0.91340 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.72 37.16 0.36 -2.67 16 2 C 0.09 1.95 5.36 -4.04 -0.02 1.93 16 3 N -0.44 -10.67 2.53 -114.81 -0.29 -10.96 16 4 C -0.30 -8.28 8.90 -14.93 -0.13 -8.41 16 5 H 0.09 2.58 7.75 -52.49 -0.41 2.17 16 6 C 0.04 0.98 5.17 -17.47 -0.09 0.89 16 7 N -0.88 -23.21 11.11 55.50 0.62 -22.60 16 8 Si 0.92 20.92 29.56 -169.99 -5.02 15.90 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.47 10.96 4.63 -10.98 -0.05 10.91 16 13 O -0.57 -15.37 14.39 5.54 0.08 -15.29 16 14 C -0.14 -2.46 2.77 -90.24 -0.25 -2.71 16 15 H 0.10 1.62 5.65 -51.93 -0.29 1.33 16 16 C -0.14 -2.16 6.65 -24.72 -0.16 -2.32 16 17 C 0.05 0.64 7.72 38.21 0.29 0.94 16 18 O -0.37 -5.74 11.01 -35.23 -0.39 -6.13 16 19 C 0.09 1.37 2.72 -26.15 -0.07 1.30 16 20 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 21 C 0.12 2.27 4.00 -4.04 -0.02 2.26 16 22 N -0.70 -11.32 5.47 -65.28 -0.36 -11.67 16 23 C 0.65 11.24 8.06 54.05 0.44 11.67 16 24 O -0.56 -11.47 11.88 -19.28 -0.23 -11.70 16 25 O -0.37 -5.47 9.94 -40.30 -0.40 -5.87 16 26 C 0.14 1.71 1.13 -90.61 -0.10 1.61 16 27 C -0.18 -2.35 8.37 37.16 0.31 -2.04 16 28 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 29 C -0.18 -2.30 8.37 37.16 0.31 -1.99 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.70 4.79 -51.93 -0.25 0.46 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.89 5.94 -51.93 -0.31 0.58 16 34 H 0.12 2.76 5.47 -51.93 -0.28 2.48 16 35 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.09 1.73 7.13 -51.93 -0.37 1.36 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 1.87 5.28 -51.93 -0.27 1.59 16 41 H 0.10 2.28 6.33 -51.93 -0.33 1.96 16 42 H 0.40 5.44 8.51 -40.82 -0.35 5.09 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.46 5.88 -51.93 -0.31 1.16 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.09 1.43 5.88 -51.93 -0.31 1.13 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 392.32 15.07 5.91 5.91 Total: -1.00 -32.07 392.32 -7.04 -39.10 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -8.10 Total: 12.89 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 1.14 Total: 10.42 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.03 Total: -45.23 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.94 Total: -38.99 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.07 -7.04 -39.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496030984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.148 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds