Wall clock time and date at job start Wed Apr 1 2020 04:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.33983 * 125.02070 * 2 1 4 4 C 1.38247 * 107.90996 * 179.97438 * 3 2 1 5 5 C 1.41122 * 134.82403 * 179.97438 * 4 3 2 6 6 C 1.35651 * 119.53921 * 179.72907 * 5 4 3 7 7 C 1.39686 * 121.72328 * 0.56456 * 6 5 4 8 8 C 1.50706 * 119.08973 * 179.72182 * 7 6 5 9 9 N 1.46500 * 109.47063 * 269.73250 * 8 7 6 10 10 C 1.34780 * 119.99706 * 180.02562 * 9 8 7 11 11 O 1.21581 * 120.00000 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99711 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99923 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.54083 * 327.61222 * 13 12 10 15 15 C 1.54268 * 110.48389 * 90.22208 * 13 12 10 16 16 C 1.53876 * 106.59607 * 142.28972 * 15 13 12 17 17 C 1.54268 * 106.59992 * 0.02562 * 16 15 13 18 18 H 1.08996 * 110.48777 * 95.06810 * 17 16 15 19 19 C 1.50698 * 110.48760 * 217.71212 * 17 16 15 20 20 H 1.08006 * 120.00324 * 114.76926 * 19 17 16 21 21 C 1.37879 * 120.00291 * 294.77471 * 19 17 16 22 22 N 1.31513 * 119.99457 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 120.00343 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47170 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47199 * 119.99839 * 23 21 19 26 26 H 1.48503 * 109.46820 * 239.99985 * 23 21 19 27 27 C 1.54882 * 110.48722 * 205.00109 * 13 12 10 28 28 C 1.35633 * 121.81537 * 359.44651 * 7 6 5 29 29 C 1.41144 * 119.59819 * 0.25520 * 28 7 6 30 30 N 1.32062 * 134.68096 * 180.02562 * 29 28 7 31 31 H 1.08997 * 109.46976 * 90.00622 * 1 2 3 32 32 H 1.09001 * 109.46800 * 210.00588 * 1 2 3 33 33 H 1.08998 * 109.47153 * 330.00191 * 1 2 3 34 34 H 1.08002 * 126.04943 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.22876 * 0.02952 * 5 4 3 36 36 H 1.07997 * 119.13948 * 180.29010 * 6 5 4 37 37 H 1.08998 * 109.46922 * 149.73133 * 8 7 6 38 38 H 1.09003 * 109.46997 * 29.73297 * 8 7 6 39 39 H 0.96999 * 120.00479 * 359.97438 * 9 8 7 40 40 H 0.97002 * 119.99982 * 359.97438 * 12 10 9 41 41 H 1.08994 * 110.03288 * 23.00936 * 15 13 12 42 42 H 1.09000 * 110.07311 * 261.59259 * 15 13 12 43 43 H 1.08998 * 110.03805 * 240.71854 * 16 15 13 44 44 H 1.09000 * 110.07667 * 119.30450 * 16 15 13 45 45 H 0.97000 * 119.99685 * 180.02562 * 22 21 19 46 46 H 1.08994 * 110.76048 * 85.06650 * 27 13 12 47 47 H 1.09004 * 110.75771 * 321.69045 * 27 13 12 48 48 H 1.08002 * 120.20017 * 180.28055 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2340 1.0972 0.0000 4 6 3.5553 0.6905 0.0006 5 6 4.8005 1.3544 0.0004 6 6 5.9459 0.6277 0.0068 7 6 5.9296 -0.7691 0.0018 8 6 7.2379 -1.5171 0.0029 9 7 7.6626 -1.7603 -1.3779 10 6 8.8128 -2.4186 -1.6231 11 8 9.4981 -2.8102 -0.6984 12 7 9.2032 -2.6427 -2.8935 13 6 10.4537 -3.3578 -3.1601 14 1 11.1880 -3.1472 -2.3825 15 6 10.1965 -4.8754 -3.2630 16 6 11.1178 -5.4029 -4.3768 17 6 11.9033 -4.1875 -4.9114 18 1 12.8715 -4.1114 -4.4166 19 6 12.0793 -4.2887 -6.4047 20 1 11.6094 -3.5648 -7.0541 21 6 12.8400 -5.3054 -6.9420 22 7 13.4125 -6.1866 -6.1512 23 14 13.0587 -5.4303 -8.7929 24 1 12.3188 -4.3257 -9.4545 25 1 14.5018 -5.3308 -9.1287 26 1 12.5288 -6.7340 -9.2670 27 6 11.0127 -2.9720 -4.5521 28 6 4.7687 -1.4706 0.0015 29 6 3.5373 -0.7808 0.0009 30 7 2.2683 -1.1462 0.0009 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.8836 2.1188 -0.0004 35 1 4.8413 2.4337 0.0002 36 1 6.8953 1.1424 0.0114 37 1 7.1112 -2.4698 0.5172 38 1 7.9948 -0.9246 0.5169 39 1 7.1156 -1.4481 -2.1157 40 1 8.6563 -2.3305 -3.6313 41 1 9.1540 -5.0606 -3.5218 42 1 10.4382 -5.3607 -2.3174 43 1 10.5226 -5.8441 -5.1762 44 1 11.8073 -6.1440 -3.9724 45 1 13.9479 -6.9016 -6.5291 46 1 11.6087 -2.0615 -4.4903 47 1 10.2046 -2.8577 -5.2747 48 1 4.7866 -2.5504 0.0022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527975790.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:30 Heat of formation + Delta-G solvation = 56.768728 kcal Electronic energy + Delta-G solvation = -27974.028722 eV Core-core repulsion = 24029.985238 eV Total energy + Delta-G solvation = -3944.043484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.66689 -39.83138 -38.22381 -37.06362 -34.65096 -33.59837 -33.10857 -32.23173 -31.64269 -29.29884 -28.55871 -28.04722 -26.89709 -25.39819 -23.68987 -22.96500 -21.67550 -20.92418 -20.78384 -19.80585 -19.02081 -18.15388 -17.49372 -17.16217 -16.61583 -16.09322 -15.91611 -15.45780 -15.30986 -14.76035 -14.57283 -14.41906 -14.27559 -14.06432 -13.86308 -13.62755 -13.45354 -13.03133 -12.68180 -12.45774 -12.31737 -12.10693 -11.86942 -11.70543 -11.65339 -11.14566 -10.94272 -10.79864 -10.66540 -10.63026 -10.50067 -10.25323 -9.94726 -9.81194 -9.50982 -9.18869 -9.03830 -8.92451 -8.68250 -8.36702 -8.33935 -7.98181 -5.96976 -3.99788 0.21504 1.38686 1.88069 2.05515 2.98544 3.32045 3.40256 3.43386 3.51567 3.58168 3.70711 4.11033 4.35662 4.46844 4.50106 4.55053 4.58779 4.71651 4.78922 4.89157 4.99042 5.21552 5.25095 5.35229 5.44967 5.59135 5.68088 5.75758 5.81733 5.94325 6.08730 6.17623 6.34540 6.37339 6.39549 6.46692 6.51854 6.56522 6.61366 6.75483 6.80851 6.97735 7.06430 7.15250 7.22937 7.38000 7.42108 7.76469 7.93441 8.06524 8.30825 8.48996 8.90735 9.03366 9.64026 11.12876 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.001672 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.658901 B =16740.291141 C =17267.308261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.324 5.324 3 C 0.072 3.928 4 C -0.204 4.204 5 C -0.045 4.045 6 C -0.138 4.138 7 C -0.061 4.061 8 C 0.180 3.820 9 N -0.748 5.748 10 C 0.702 3.298 11 O -0.594 6.594 12 N -0.734 5.734 13 C 0.154 3.846 14 H 0.086 0.914 15 C -0.135 4.135 16 C -0.097 4.097 17 C 0.050 3.950 18 H 0.034 0.966 19 C -0.513 4.513 20 H 0.056 0.944 21 C 0.062 3.938 22 N -0.888 5.888 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.120 4.120 28 C -0.080 4.080 29 C 0.100 3.900 30 N -0.306 5.306 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.185 0.815 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.395 0.605 40 H 0.393 0.607 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.259 0.741 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.349 17.589 13.780 34.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.098 5.098 3 C -0.083 4.083 4 C -0.213 4.213 5 C -0.066 4.066 6 C -0.158 4.158 7 C -0.066 4.066 8 C 0.056 3.944 9 N -0.405 5.405 10 C 0.401 3.599 11 O -0.472 6.472 12 N -0.387 5.387 13 C 0.050 3.950 14 H 0.104 0.896 15 C -0.174 4.174 16 C -0.135 4.135 17 C 0.031 3.969 18 H 0.052 0.948 19 C -0.551 4.551 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.526 5.526 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.212 1.212 27 C -0.158 4.158 28 C -0.102 4.102 29 C -0.053 4.053 30 N -0.134 5.134 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.202 0.798 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.226 0.774 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -26.602 16.011 14.651 34.332 hybrid contribution -0.104 0.811 -1.721 1.906 sum -26.706 16.822 12.930 34.108 Atomic orbital electron populations 1.22112 0.73456 1.05300 1.04340 1.48546 1.07658 1.04091 1.49535 1.22644 0.90531 0.93257 1.01914 1.19640 0.93152 0.93606 1.14941 1.20198 0.89792 0.99072 0.97498 1.20469 0.98386 0.92954 1.03972 1.19412 0.94048 0.93828 0.99300 1.20028 0.91798 0.99475 0.83132 1.45142 1.24319 1.62866 1.08144 1.16019 0.81045 0.78778 0.84014 1.90907 1.55557 1.57370 1.43379 1.45415 1.26331 1.61660 1.05279 1.21953 0.83295 0.91298 0.98498 0.89583 1.22641 0.99859 0.95031 0.99861 1.22085 0.96747 0.99809 0.94885 1.19417 0.93334 0.88289 0.95830 0.94810 1.21165 1.30798 1.11719 0.91438 0.92606 1.24991 0.95550 0.95865 0.97612 1.69984 1.33034 1.15291 1.34306 0.86598 0.77784 0.77833 0.86125 1.19854 1.21103 1.21153 1.22870 0.99625 1.00290 0.92998 1.19823 0.87848 0.99561 1.02931 1.20903 0.92233 0.92937 0.99226 1.77764 1.01075 1.04306 1.30212 0.89682 0.88505 0.88750 0.79786 0.85733 0.85625 0.90750 0.90566 0.77103 0.77414 0.93144 0.93047 0.93031 0.92643 0.93141 0.92881 0.92151 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.22 11.38 59.85 0.68 0.90 16 2 N -0.32 -2.38 3.95 -67.61 -0.27 -2.65 16 3 C 0.07 0.45 11.50 -16.61 -0.19 0.26 16 4 C -0.20 -1.80 6.33 -105.19 -0.67 -2.47 16 5 C -0.05 -0.34 10.09 -39.41 -0.40 -0.74 16 6 C -0.14 -1.14 9.51 -39.97 -0.38 -1.52 16 7 C -0.06 -0.57 5.21 -105.01 -0.55 -1.12 16 8 C 0.18 1.93 5.74 -5.19 -0.03 1.90 16 9 N -0.75 -8.81 5.55 -66.41 -0.37 -9.18 16 10 C 0.70 11.23 8.57 -86.91 -0.74 10.49 16 11 O -0.59 -11.99 15.99 5.29 0.08 -11.91 16 12 N -0.73 -11.35 5.10 -57.06 -0.29 -11.64 16 13 C 0.15 2.89 3.22 -66.28 -0.21 2.67 16 14 H 0.09 1.76 7.56 -51.93 -0.39 1.36 16 15 C -0.13 -2.71 6.54 -25.61 -0.17 -2.88 16 16 C -0.10 -2.28 5.60 -25.61 -0.14 -2.42 16 17 C 0.05 1.24 2.73 -90.10 -0.25 0.99 16 18 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.51 -13.92 8.36 -34.44 -0.29 -14.21 16 20 H 0.06 1.49 7.77 -52.48 -0.41 1.08 16 21 C 0.06 1.71 5.35 -17.82 -0.10 1.61 16 22 N -0.89 -25.69 12.63 55.43 0.70 -24.99 16 23 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C -0.12 -2.39 5.90 -24.73 -0.15 -2.54 16 28 C -0.08 -0.82 9.65 -39.41 -0.38 -1.20 16 29 C 0.10 1.11 7.49 -83.05 -0.62 0.48 16 30 N -0.31 -3.43 12.54 33.25 0.42 -3.01 16 31 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 -0.04 8.13 -51.93 -0.42 -0.46 16 34 H 0.19 0.33 8.06 -52.49 -0.42 -0.09 16 35 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 38 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 39 H 0.40 3.79 8.48 -40.82 -0.35 3.44 16 40 H 0.39 5.00 8.58 -40.82 -0.35 4.65 16 41 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 1.27 7.83 -51.93 -0.41 0.87 16 44 H 0.05 1.40 8.06 -51.93 -0.42 0.98 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 48 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -35.55 399.53 -10.65 -46.20 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.35 Total: 4.70 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -4.58 Total: -9.79 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.19 Total: -51.47 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.55 -10.65 -46.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527975790.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.972 kcal (2) G-P(sol) polarization free energy of solvation -35.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds