Wall clock time and date at job start Wed Apr 1 2020 04:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38060 * 126.34557 * 2 1 4 4 C 1.38830 * 134.14086 * 359.97124 * 3 2 1 5 5 C 1.37857 * 119.69148 * 180.31854 * 4 3 2 6 6 C 1.38780 * 120.44653 * 359.96583 * 5 4 3 7 7 C 1.36608 * 120.67261 * 0.03807 * 6 5 4 8 8 C 1.39736 * 119.88492 * 359.97438 * 7 6 5 9 9 N 1.35790 * 133.60371 * 180.02562 * 8 7 6 10 10 C 1.30109 * 109.64320 * 179.97438 * 9 8 7 11 11 C 1.50704 * 124.95050 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.46371 * 165.00154 * 11 10 9 13 13 C 1.53030 * 109.45559 * 284.97736 * 11 10 9 14 14 C 1.53113 * 109.28069 * 179.18613 * 13 11 10 15 15 C 1.53116 * 109.16416 * 302.34882 * 14 13 11 16 16 C 1.53034 * 109.27729 * 57.64878 * 15 14 13 17 17 N 1.46845 * 109.45755 * 45.02619 * 11 10 9 18 18 C 1.46902 * 111.00404 * 54.15377 * 17 11 10 19 19 C 1.50703 * 109.46876 * 64.73458 * 18 17 11 20 20 O 1.21291 * 120.00166 * 354.28194 * 19 18 17 21 21 N 1.34772 * 119.99828 * 174.27895 * 19 18 17 22 22 C 1.37094 * 119.99982 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00246 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99947 * 180.02562 * 22 21 19 25 25 N 1.31417 * 119.99853 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 120.00240 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.46916 * 90.00290 * 26 24 22 28 28 H 1.48499 * 109.47043 * 210.00725 * 26 24 22 29 29 H 1.48503 * 109.46949 * 330.00716 * 26 24 22 30 30 H 1.09010 * 109.47234 * 270.12786 * 1 2 3 31 31 H 1.09002 * 109.47152 * 30.12449 * 1 2 3 32 32 H 1.08992 * 109.47228 * 150.12780 * 1 2 3 33 33 H 1.08002 * 120.15655 * 0.30716 * 4 3 2 34 34 H 1.07997 * 119.77571 * 179.97438 * 5 4 3 35 35 H 1.07995 * 119.66089 * 180.02562 * 6 5 4 36 36 H 1.07996 * 120.05550 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.50581 * 299.12955 * 13 11 10 38 38 H 1.09005 * 109.50407 * 59.24417 * 13 11 10 39 39 H 1.09002 * 109.51890 * 62.25144 * 14 13 11 40 40 H 1.09002 * 109.52579 * 182.37453 * 14 13 11 41 41 H 1.08998 * 109.50479 * 177.59333 * 15 14 13 42 42 H 1.09002 * 109.49910 * 297.67436 * 15 14 13 43 43 H 1.09007 * 109.46086 * 180.81149 * 16 15 14 44 44 H 1.08993 * 109.46617 * 60.84286 * 16 15 14 45 45 H 1.09001 * 109.47255 * 184.73564 * 18 17 11 46 46 H 1.08994 * 109.47219 * 304.73656 * 18 17 11 47 47 H 0.97006 * 120.00230 * 0.02562 * 21 19 18 48 48 H 0.96997 * 119.99964 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2832 1.1120 0.0000 4 6 2.0537 2.4812 -0.0005 5 6 3.1219 3.3526 -0.0070 6 6 4.4231 2.8700 -0.0123 7 6 4.6679 1.5261 -0.0120 8 6 3.6008 0.6239 -0.0057 9 7 3.5204 -0.7316 -0.0033 10 6 2.2713 -1.0956 0.0035 11 6 1.7881 -2.5231 0.0075 12 1 0.7327 -2.5485 0.2790 13 6 1.9706 -3.1269 -1.3868 14 6 1.4974 -4.5830 -1.3730 15 6 2.2868 -5.3581 -0.3145 16 6 2.0951 -4.6896 1.0487 17 7 2.5632 -3.2992 0.9838 18 6 2.5233 -2.6677 2.3095 19 6 1.1105 -2.6890 2.8336 20 8 0.2077 -3.0864 2.1278 21 7 0.8502 -2.2664 4.0866 22 6 -0.4350 -2.2862 4.5636 23 1 -1.2389 -2.6401 3.9351 24 6 -0.7034 -1.8500 5.8553 25 7 -1.9354 -1.8686 6.3123 26 14 0.6868 -1.2373 6.9422 27 1 0.8575 0.2253 6.7500 28 1 0.3626 -1.5154 8.3644 29 1 1.9456 -1.9348 6.5759 30 1 -0.3634 0.0023 1.0277 31 1 -0.3633 0.8889 -0.5158 32 1 -0.3633 -0.8911 -0.5118 33 1 1.0430 2.8620 0.0040 34 1 2.9450 4.4180 -0.0078 35 1 5.2505 3.5641 -0.0169 36 1 5.6845 1.1614 -0.0165 37 1 1.3827 -2.5600 -2.1087 38 1 3.0240 -3.0891 -1.6646 39 1 0.4347 -4.6183 -1.1333 40 1 1.6647 -5.0297 -2.3531 41 1 1.9248 -6.3852 -0.2702 42 1 3.3450 -5.3560 -0.5758 43 1 2.6675 -5.2306 1.8023 44 1 1.0384 -4.7048 1.3154 45 1 3.1725 -3.2154 2.9926 46 1 2.8662 -1.6361 2.2311 47 1 1.5721 -1.9482 4.6510 48 1 -2.1228 -1.5645 7.2141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532718063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:35 Heat of formation + Delta-G solvation = 51.907218 kcal Electronic energy + Delta-G solvation = -31295.455604 eV Core-core repulsion = 27351.201309 eV Total energy + Delta-G solvation = -3944.254295 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.12246 -39.64648 -37.68104 -37.02077 -34.21165 -34.07943 -33.04621 -31.79941 -31.54939 -30.37746 -28.58887 -27.54838 -26.80681 -24.77477 -23.90351 -22.70045 -22.03506 -21.58987 -20.11999 -19.63376 -19.29299 -18.20060 -17.22470 -16.88471 -16.05803 -15.96487 -15.77991 -14.99332 -14.87797 -14.76899 -14.30242 -14.14906 -13.98247 -13.92071 -13.65873 -13.35428 -13.17505 -12.92200 -12.84676 -12.68630 -12.31713 -12.23236 -11.97736 -11.89803 -11.48471 -11.41489 -11.38871 -11.29477 -10.74743 -10.66495 -10.54084 -10.45862 -10.24889 -10.16407 -10.10924 -9.68368 -9.61071 -9.36699 -8.29158 -8.18092 -7.94852 -7.54534 -6.43885 -3.95003 1.04240 1.61045 2.70067 2.92144 2.96248 3.01329 3.09171 3.56239 3.97491 4.00800 4.14553 4.25636 4.55217 4.61163 4.81907 4.98581 5.01119 5.04826 5.10652 5.13291 5.20653 5.29877 5.39415 5.48532 5.51028 5.57689 5.62948 5.69216 5.74849 5.80557 5.81400 5.85020 5.93962 5.97215 6.03231 6.15057 6.19560 6.20341 6.30955 6.39479 6.54813 6.57231 6.64358 6.65566 6.95853 7.19269 7.22889 7.38510 7.44658 8.01377 8.14004 8.44854 8.80966 9.29909 9.66868 10.68530 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008163 B = 0.005058 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.207507 B = 5534.264291 C = 7756.315980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.486 5.486 3 C 0.043 3.957 4 C -0.107 4.107 5 C -0.111 4.111 6 C -0.134 4.134 7 C -0.065 4.065 8 C 0.044 3.956 9 N -0.474 5.474 10 C 0.301 3.699 11 C 0.147 3.853 12 H 0.101 0.899 13 C -0.103 4.103 14 C -0.117 4.117 15 C -0.113 4.113 16 C 0.038 3.962 17 N -0.490 5.490 18 C 0.037 3.963 19 C 0.415 3.585 20 O -0.581 6.581 21 N -0.581 5.581 22 C -0.308 4.308 23 H 0.120 0.880 24 C 0.045 3.955 25 N -0.876 5.876 26 Si 0.876 3.124 27 H -0.270 1.270 28 H -0.274 1.274 29 H -0.268 1.268 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.371 0.629 48 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.560 4.322 -13.566 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.174 5.174 3 C -0.066 4.066 4 C -0.128 4.128 5 C -0.130 4.130 6 C -0.154 4.154 7 C -0.085 4.085 8 C -0.075 4.075 9 N -0.193 5.193 10 C 0.035 3.965 11 C 0.037 3.963 12 H 0.119 0.881 13 C -0.141 4.141 14 C -0.155 4.155 15 C -0.151 4.151 16 C -0.090 4.090 17 N -0.213 5.213 18 C -0.095 4.095 19 C 0.201 3.799 20 O -0.467 6.467 21 N -0.218 5.218 22 C -0.437 4.437 23 H 0.137 0.863 24 C -0.159 4.159 25 N -0.515 5.515 26 Si 0.702 3.298 27 H -0.195 1.195 28 H -0.199 1.199 29 H -0.193 1.193 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.204 0.796 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.832 3.546 -14.011 17.480 hybrid contribution -0.674 1.228 1.563 2.099 sum 9.159 4.775 -12.447 16.174 Atomic orbital electron populations 1.22029 0.75888 1.04033 1.04568 1.45214 1.07354 1.04966 1.59910 1.18911 0.91485 0.89336 1.06913 1.19938 0.99581 0.88929 1.04361 1.20797 0.92024 0.98960 1.01251 1.20572 0.96823 0.94787 1.03258 1.19972 0.97296 0.91513 0.99697 1.19211 0.92043 0.90731 1.05513 1.70540 1.17116 1.09652 1.21946 1.23554 0.85144 0.90492 0.97289 1.20386 0.98612 0.83129 0.94142 0.88136 1.21559 1.02637 0.95874 0.94066 1.21543 1.00257 0.94733 0.98953 1.21558 1.00612 0.98266 0.94653 1.22367 1.02052 0.87409 0.97125 1.62297 1.52480 1.01917 1.04638 1.22144 0.94747 1.01457 0.91190 1.21070 0.91271 0.84375 0.83162 1.90402 1.47279 1.52024 1.56999 1.42423 1.09364 1.57101 1.12906 1.19426 0.84285 1.41256 0.98733 0.86277 1.25058 0.96539 0.97383 0.96884 1.69619 1.18259 1.45789 1.17872 0.86720 0.81913 0.79896 0.81274 1.19535 1.19943 1.19323 0.89830 0.90070 0.89288 0.86339 0.85670 0.85756 0.85630 0.92139 0.90460 0.91765 0.91877 0.91725 0.91503 0.91198 0.90508 0.89004 0.89278 0.79586 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 10.72 59.84 0.64 1.68 16 2 N -0.49 -7.73 3.21 -118.50 -0.38 -8.11 16 3 C 0.04 0.68 6.87 -83.98 -0.58 0.10 16 4 C -0.11 -1.40 10.05 -39.50 -0.40 -1.80 16 5 C -0.11 -1.25 10.03 -39.52 -0.40 -1.64 16 6 C -0.13 -1.52 9.96 -39.97 -0.40 -1.92 16 7 C -0.07 -0.89 10.05 -39.61 -0.40 -1.29 16 8 C 0.04 0.73 7.23 -84.70 -0.61 0.12 16 9 N -0.47 -8.39 10.81 -8.23 -0.09 -8.48 16 10 C 0.30 5.10 5.02 -154.82 -0.78 4.32 16 11 C 0.15 2.39 1.70 -68.88 -0.12 2.28 16 12 H 0.10 1.84 4.58 -51.93 -0.24 1.61 16 13 C -0.10 -1.40 5.35 -26.66 -0.14 -1.54 16 14 C -0.12 -1.43 6.00 -26.61 -0.16 -1.59 16 15 C -0.11 -1.43 6.09 -26.65 -0.16 -1.59 16 16 C 0.04 0.59 5.00 -3.83 -0.02 0.57 16 17 N -0.49 -8.19 4.66 -229.52 -1.07 -9.25 16 18 C 0.04 0.67 5.57 -4.97 -0.03 0.64 16 19 C 0.41 9.01 7.18 -10.99 -0.08 8.93 16 20 O -0.58 -13.72 11.22 5.55 0.06 -13.66 16 21 N -0.58 -13.57 5.09 -10.96 -0.06 -13.63 16 22 C -0.31 -8.39 10.16 -14.93 -0.15 -8.54 16 23 H 0.12 3.67 7.39 -52.49 -0.39 3.29 16 24 C 0.05 1.21 5.50 -17.46 -0.10 1.12 16 25 N -0.88 -24.91 13.96 55.50 0.77 -24.14 16 26 Si 0.88 19.33 27.74 -169.99 -4.71 14.62 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 30 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.12 7.30 -51.93 -0.38 0.74 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 44 H 0.08 1.43 5.67 -51.93 -0.29 1.14 16 45 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.09 1.69 6.42 -51.93 -0.33 1.35 16 47 H 0.37 7.96 5.76 -40.82 -0.24 7.72 16 48 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -31.43 378.97 -10.59 -42.01 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -6.95 Total: 15.08 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -3.87 Total: -0.15 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -0.82 Total: -63.61 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.06 Total: -13.66 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.43 -10.59 -42.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532718063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.918 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds