Wall clock time and date at job start Wed Apr 1 2020 03:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42902 * 109.46739 * 2 1 4 4 C 1.42902 * 113.99437 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.54791 * 4.33201 * 4 3 2 6 6 C 1.53072 * 117.51063 * 218.60554 * 4 3 2 7 7 C 1.52999 * 117.49761 * 149.99770 * 4 3 2 8 8 H 1.09003 * 117.49524 * 0.02562 * 7 4 3 9 9 N 1.46901 * 117.50132 * 215.00447 * 7 4 3 10 10 C 1.46898 * 111.00231 * 155.08995 * 9 7 4 11 11 C 1.50697 * 109.47196 * 184.73097 * 10 9 7 12 12 C 1.35070 * 126.07636 * 105.50198 * 11 10 9 13 13 N 1.35054 * 107.98468 * 180.27728 * 12 11 10 14 14 C 1.46504 * 125.92693 * 179.74842 * 13 12 11 15 15 C 1.50698 * 109.46849 * 125.00374 * 14 13 12 16 16 H 1.08000 * 119.99957 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99712 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00298 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99905 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47512 * 59.99418 * 19 17 15 21 21 H 1.48502 * 109.47226 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47193 * 299.99446 * 19 17 15 23 23 N 1.40070 * 108.14342 * 359.73098 * 13 12 11 24 24 C 1.31653 * 108.10169 * 359.97438 * 23 13 12 25 25 C 1.48365 * 126.03954 * 180.02562 * 24 23 13 26 26 C 1.39769 * 120.90518 * 317.68738 * 25 24 23 27 27 C 1.37958 * 119.02153 * 180.27439 * 26 25 24 28 28 N 1.31944 * 120.87927 * 359.45375 * 27 26 25 29 29 C 1.31928 * 122.00404 * 0.58351 * 28 27 26 30 30 C 1.37967 * 120.88183 * 359.68714 * 29 28 27 31 31 H 1.09006 * 109.46761 * 60.00344 * 1 2 3 32 32 H 1.08997 * 109.47047 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47312 * 300.00191 * 1 2 3 34 34 H 1.08998 * 109.47312 * 239.99809 * 2 1 3 35 35 H 1.08997 * 109.46608 * 119.99860 * 2 1 3 36 36 H 1.09002 * 117.51226 * 145.04570 * 6 4 3 37 37 H 1.08998 * 117.49805 * 0.02562 * 6 4 3 38 38 H 1.00897 * 110.99706 * 31.12669 * 9 7 4 39 39 H 1.09001 * 109.47387 * 64.72546 * 10 9 7 40 40 H 1.09000 * 109.46900 * 304.73129 * 10 9 7 41 41 H 1.08003 * 126.00572 * 359.97438 * 12 11 10 42 42 H 1.09000 * 109.47009 * 245.00587 * 14 13 12 43 43 H 1.09000 * 109.47131 * 5.00560 * 14 13 12 44 44 H 0.97005 * 120.00397 * 180.02562 * 18 17 15 45 45 H 1.07999 * 120.49045 * 359.97438 * 26 25 24 46 46 H 1.08002 * 119.56187 * 179.72849 * 27 26 25 47 47 H 1.08003 * 119.56181 * 179.69861 * 29 28 27 48 48 H 1.07993 * 120.49341 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9769 0.5196 -0.0733 6 6 4.0517 2.5737 0.8478 7 6 4.0426 2.6874 -0.6780 8 1 3.3584 3.4090 -1.1244 9 7 5.3210 2.5082 -1.3792 10 6 5.4917 3.5207 -2.4296 11 6 6.7545 3.2361 -3.2012 12 6 6.8261 2.7165 -4.4459 13 7 8.1306 2.6102 -4.7790 14 6 8.6552 2.0882 -6.0434 15 6 9.5670 3.1117 -6.6696 16 1 9.7383 4.0566 -6.1753 17 6 10.1817 2.8421 -7.8739 18 7 9.9728 1.6918 -8.4759 19 14 11.3126 4.1104 -8.6498 20 1 12.4406 4.3980 -7.7276 21 1 11.8442 3.5814 -9.9315 22 1 10.5525 5.3600 -8.9068 23 7 8.8950 3.0860 -3.7060 24 6 8.0700 3.4684 -2.7539 25 6 8.4575 4.0373 -1.4396 26 6 9.5207 3.4986 -0.7095 27 6 9.8441 4.0545 0.5110 28 7 9.1718 5.0863 0.9847 29 6 8.1619 5.6239 0.3277 30 6 7.7689 5.1262 -0.8976 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 5.0062 2.3658 1.3313 37 1 3.3733 3.2198 1.4049 38 1 5.3975 1.5765 -1.7589 39 1 5.5589 4.5089 -1.9744 40 1 4.6378 3.4898 -3.1063 41 1 5.9877 2.4312 -5.0639 42 1 9.2135 1.1714 -5.8542 43 1 7.8275 1.8765 -6.7203 44 1 10.4055 1.5020 -9.3231 45 1 10.0778 2.6566 -1.0930 46 1 10.6612 3.6423 1.0845 47 1 7.6359 6.4650 0.7547 48 1 6.9410 5.5709 -1.4297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567039871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:51 Heat of formation + Delta-G solvation = 74.648536 kcal Electronic energy + Delta-G solvation = -28616.427783 eV Core-core repulsion = 24673.159626 eV Total energy + Delta-G solvation = -3943.268157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.19464 -40.65207 -39.73867 -37.44998 -35.95953 -34.72961 -34.18218 -32.39738 -32.12109 -31.66861 -30.69959 -28.96702 -25.91282 -25.66791 -24.24897 -23.77125 -23.56498 -22.96442 -22.08245 -21.48055 -20.83530 -18.70193 -18.27181 -17.95408 -17.24187 -16.98835 -16.73936 -16.55814 -16.43414 -16.15017 -15.88251 -15.58494 -15.31170 -14.79879 -14.70992 -14.64216 -14.39186 -14.16212 -13.94078 -13.70451 -13.62012 -13.40767 -13.34436 -13.08309 -12.94587 -12.76666 -12.64745 -12.41096 -12.22674 -12.14678 -11.85386 -11.77459 -11.72221 -11.42342 -10.90062 -10.75357 -10.41587 -10.17283 -10.00787 -9.93269 -9.28311 -9.13820 -8.38217 -6.51880 0.10790 0.30972 1.13619 1.35012 1.37033 1.45463 1.74709 1.86570 2.31130 2.46298 2.90151 2.94233 3.00897 3.33804 3.49980 3.66300 3.84026 3.90376 4.04887 4.09716 4.15303 4.19633 4.23937 4.24198 4.27663 4.36280 4.42131 4.47695 4.52587 4.62241 4.66479 4.81067 4.87233 4.88508 4.95438 4.99084 5.01873 5.02445 5.08672 5.10276 5.18115 5.26724 5.45628 5.53699 5.69799 5.80622 5.82177 6.08561 6.21337 6.30532 6.42398 6.58794 6.92091 7.08452 7.18378 8.69577 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.002785 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.369186 B =10052.998734 C =12626.114938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.378 6.378 4 C 0.007 3.993 5 H 0.116 0.884 6 C -0.165 4.165 7 C 0.022 3.978 8 H 0.106 0.894 9 N -0.652 5.652 10 C 0.153 3.847 11 C -0.235 4.235 12 C 0.054 3.946 13 N -0.345 5.345 14 C 0.272 3.728 15 C -0.549 4.549 16 H 0.050 0.950 17 C 0.021 3.979 18 N -0.919 5.919 19 Si 0.968 3.032 20 H -0.276 1.276 21 H -0.272 1.272 22 H -0.268 1.268 23 N -0.314 5.314 24 C 0.091 3.909 25 C 0.044 3.956 26 C -0.165 4.165 27 C 0.098 3.902 28 N -0.504 5.504 29 C 0.100 3.900 30 C -0.144 4.144 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.341 0.659 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.195 0.805 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.273 0.727 45 H 0.125 0.875 46 H 0.178 0.822 47 H 0.186 0.814 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.844 0.135 17.841 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.297 6.297 4 C -0.052 4.052 5 H 0.133 0.867 6 C -0.203 4.203 7 C -0.089 4.089 8 H 0.123 0.877 9 N -0.284 5.284 10 C 0.024 3.976 11 C -0.248 4.248 12 C -0.095 4.095 13 N -0.125 5.125 14 C 0.153 3.847 15 C -0.587 4.587 16 H 0.068 0.932 17 C -0.180 4.180 18 N -0.557 5.557 19 Si 0.792 3.208 20 H -0.201 1.201 21 H -0.197 1.197 22 H -0.193 1.193 23 N -0.138 5.138 24 C -0.073 4.073 25 C 0.034 3.966 26 C -0.186 4.186 27 C -0.058 4.058 28 N -0.214 5.214 29 C -0.056 4.056 30 C -0.165 4.165 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.161 0.839 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.212 0.788 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.143 0.857 46 H 0.195 0.805 47 H 0.203 0.797 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.044 0.667 18.376 23.137 hybrid contribution -0.587 -0.724 -2.263 2.447 sum -14.631 -0.057 16.113 21.765 Atomic orbital electron populations 1.21772 0.92721 1.03449 1.02744 1.22717 0.96343 0.82652 1.00829 1.87810 1.19325 1.28196 1.94326 1.23235 0.81614 0.94709 1.05648 0.86665 1.23711 1.01766 1.00982 0.93878 1.22850 0.91186 1.00198 0.94618 0.87651 1.60358 1.30517 1.07100 1.30416 1.20139 0.91085 0.95884 0.90482 1.19935 0.94712 1.14568 0.95547 1.22889 0.88266 1.00976 0.97348 1.49121 1.04295 1.45538 1.13545 1.19304 0.95437 0.93943 0.75971 1.21333 1.29081 1.02264 1.05990 0.93159 1.25696 0.97683 0.97735 0.96880 1.69972 1.44242 1.23663 1.17852 0.85458 0.78752 0.78919 0.77686 1.20136 1.19658 1.19324 1.77621 1.20896 1.19018 0.96226 1.20773 0.92115 1.00782 0.93617 1.18211 0.94454 0.94260 0.89677 1.22253 0.97723 1.01970 0.96671 1.22921 0.98331 0.91818 0.92729 1.67685 1.07636 1.10444 1.35638 1.23076 0.92814 0.98767 0.90957 1.22238 1.00966 0.95816 0.97486 0.92371 0.89169 0.92053 0.92815 0.92423 0.88156 0.87883 0.83915 0.89613 0.93083 0.78766 0.96193 0.92445 0.91768 0.85737 0.80489 0.79669 0.83406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 71.98 0.74 -0.98 16 2 C 0.05 0.73 6.53 71.98 0.47 1.20 16 3 O -0.38 -7.40 10.60 -148.98 -1.58 -8.98 16 4 C 0.01 0.13 6.25 30.62 0.19 0.32 16 5 H 0.12 1.90 7.93 -2.39 -0.02 1.88 16 6 C -0.16 -2.96 10.41 30.62 0.32 -2.64 16 7 C 0.02 0.42 6.19 44.91 0.28 0.70 16 8 H 0.11 1.97 7.90 -2.39 -0.02 1.96 16 9 N -0.65 -14.05 6.77 -495.58 -3.35 -17.40 16 10 C 0.15 3.50 5.55 85.56 0.48 3.98 16 11 C -0.24 -7.35 5.56 -19.95 -0.11 -7.46 16 12 C 0.05 1.85 11.32 83.47 0.94 2.80 16 13 N -0.35 -15.32 3.67 -351.90 -1.29 -16.61 16 14 C 0.27 13.74 6.26 85.63 0.54 14.28 16 15 C -0.55 -30.59 9.23 25.60 0.24 -30.35 16 16 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 17 C 0.02 1.14 5.46 84.66 0.46 1.60 16 18 N -0.92 -51.52 13.29 21.45 0.28 -51.23 16 19 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 N -0.31 -14.21 12.44 -48.17 -0.60 -14.81 16 24 C 0.09 3.34 6.72 42.51 0.29 3.63 16 25 C 0.04 1.39 5.77 -19.84 -0.11 1.27 16 26 C -0.17 -4.95 9.89 22.57 0.22 -4.73 16 27 C 0.10 2.51 11.17 84.61 0.95 3.45 16 28 N -0.50 -13.11 10.35 -196.13 -2.03 -15.14 16 29 C 0.10 2.28 11.17 84.61 0.95 3.23 16 30 C -0.14 -3.66 9.01 22.58 0.20 -3.45 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.34 7.49 8.61 -89.70 -0.77 6.72 16 39 H 0.09 1.84 5.80 -2.39 -0.01 1.83 16 40 H 0.05 1.03 8.12 -2.39 -0.02 1.01 16 41 H 0.20 5.28 8.06 -2.91 -0.02 5.26 16 42 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 2.82 8.07 -2.39 -0.02 2.80 16 44 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 45 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 46 H 0.18 3.45 8.06 -2.91 -0.02 3.43 16 47 H 0.19 2.87 8.06 -2.91 -0.02 2.84 16 48 H 0.15 3.22 6.27 -2.91 -0.02 3.21 16 Total: -1.00 -66.69 410.93 0.69 -66.00 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.20 Total: 25.85 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 7.03 Total: -13.16 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -6.99 Total: -115.19 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -1.58 Total: -8.98 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -66.69 0.69 -66.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567039871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.650 kcal (2) G-P(sol) polarization free energy of solvation -66.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds