Wall clock time and date at job start Wed Apr 1 2020 04:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34963 * 125.97366 * 2 1 4 4 C 1.35257 * 107.85774 * 179.72757 * 3 2 1 5 5 C 1.40422 * 107.86612 * 0.42494 * 4 3 2 6 6 N 1.39992 * 125.97150 * 179.82635 * 5 4 3 7 7 C 1.46495 * 120.00233 * 359.71984 * 6 5 4 8 8 C 1.53002 * 109.47068 * 179.97438 * 7 6 5 9 9 N 1.46495 * 109.47068 * 179.97438 * 8 7 6 10 10 C 1.34778 * 120.00052 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99933 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00336 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.47406 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46997 * 54.99432 * 13 12 10 15 15 C 1.50698 * 109.46685 * 294.99651 * 13 12 10 16 16 H 1.07996 * 120.00328 * 325.84373 * 15 13 12 17 17 C 1.37886 * 119.99647 * 145.84544 * 15 13 12 18 18 N 1.31515 * 120.00073 * 6.12070 * 17 15 13 19 19 Si 1.86799 * 119.99749 * 186.11993 * 17 15 13 20 20 H 1.48500 * 109.47343 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46870 * 120.00053 * 19 17 15 22 22 H 1.48502 * 109.47086 * 239.99962 * 19 17 15 23 23 C 1.50700 * 109.47358 * 174.99789 * 13 12 10 24 24 C 1.38243 * 119.99752 * 63.46394 * 23 13 12 25 25 C 1.38234 * 119.99751 * 179.81015 * 24 23 13 26 26 C 1.38243 * 119.99981 * 0.40282 * 25 24 23 27 27 C 1.38237 * 119.99828 * 359.85168 * 26 25 24 28 28 C 1.38230 * 120.00047 * 243.74448 * 23 13 12 29 29 N 1.31226 * 108.04735 * 359.57058 * 5 4 3 30 30 H 1.08995 * 109.47345 * 269.97405 * 1 2 3 31 31 H 1.09002 * 109.47156 * 29.97822 * 1 2 3 32 32 H 1.09005 * 109.47191 * 149.97115 * 1 2 3 33 33 H 1.07993 * 126.06499 * 0.02562 * 3 2 1 34 34 H 1.08003 * 126.06059 * 180.29225 * 4 3 2 35 35 H 0.97004 * 119.99423 * 179.72327 * 6 5 4 36 36 H 1.09002 * 109.46773 * 60.00021 * 7 6 5 37 37 H 1.08996 * 109.47382 * 300.00241 * 7 6 5 38 38 H 1.09002 * 109.46909 * 60.00591 * 8 7 6 39 39 H 1.08996 * 109.47613 * 300.00586 * 8 7 6 40 40 H 0.97004 * 120.00344 * 0.02562 * 9 8 7 41 41 H 1.09009 * 109.46668 * 299.99854 * 12 10 9 42 42 H 1.09002 * 109.46982 * 59.99679 * 12 10 9 43 43 H 0.97001 * 119.99702 * 180.02562 * 18 17 15 44 44 H 1.07994 * 119.99670 * 0.02562 * 24 23 13 45 45 H 1.07996 * 120.00343 * 180.23564 * 25 24 23 46 46 H 1.07999 * 119.99831 * 179.83480 * 26 25 24 47 47 H 1.08001 * 119.99971 * 179.97438 * 27 26 25 48 48 H 1.08005 * 120.00086 * 359.97309 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2577 1.0922 0.0000 4 6 3.5432 0.6717 0.0061 5 6 3.5371 -0.7325 0.0001 6 7 4.6665 -1.5597 0.0001 7 6 6.0071 -0.9691 0.0006 8 6 7.0554 -2.0835 0.0011 9 7 8.3960 -1.4929 0.0010 10 6 9.4833 -2.2893 0.0009 11 8 9.3519 -3.4950 0.0004 12 6 10.8624 -1.6818 0.0014 13 6 11.9107 -2.7962 0.0005 14 1 11.7302 -3.4641 -0.8418 15 6 11.8175 -3.5744 1.2876 16 1 11.5514 -3.0707 2.2051 17 6 12.0720 -4.9295 1.2938 18 7 12.5123 -5.5209 0.2048 19 14 11.7915 -5.9253 2.8492 20 1 11.2979 -5.0312 3.9272 21 1 10.7847 -6.9843 2.5840 22 1 13.0693 -6.5521 3.2729 23 6 13.2859 -2.1922 -0.1229 24 6 13.7685 -1.3631 0.8724 25 6 15.0314 -0.8122 0.7611 26 6 15.8085 -1.0839 -0.3495 27 6 15.3238 -1.9088 -1.3473 28 6 14.0624 -2.4627 -1.2341 29 7 2.2877 -1.1337 0.0001 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5143 33 1 1.9247 2.1195 0.0004 34 1 4.4189 1.3038 0.0122 35 1 4.5613 -2.5240 -0.0003 36 1 6.1322 -0.3526 0.8909 37 1 6.1327 -0.3520 -0.8891 38 1 6.9305 -2.7002 -0.8889 39 1 6.9297 -2.7002 0.8910 40 1 8.5012 -0.5285 0.0010 41 1 10.9879 -1.0647 -0.8885 42 1 10.9876 -1.0653 0.8916 43 1 12.6910 -6.4743 0.2091 44 1 13.1601 -1.1485 1.7385 45 1 15.4100 -0.1675 1.5404 46 1 16.7942 -0.6513 -0.4377 47 1 15.9308 -2.1207 -2.2151 48 1 13.6837 -3.1072 -2.0136 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567355612.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:20 Heat of formation + Delta-G solvation = 74.017123 kcal Electronic energy + Delta-G solvation = -28043.254424 eV Core-core repulsion = 24099.958886 eV Total energy + Delta-G solvation = -3943.295538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.19164 -39.12173 -38.19384 -36.59546 -34.38154 -33.78557 -32.37465 -31.42788 -30.33931 -29.98539 -29.25421 -28.00967 -26.06332 -25.31036 -23.19589 -22.40989 -21.59592 -21.05535 -20.59447 -20.02620 -19.18610 -17.48484 -16.68772 -16.35762 -16.07460 -15.82518 -15.61681 -15.36289 -15.31904 -14.51536 -14.36590 -14.17380 -13.98348 -13.96294 -13.76820 -13.17633 -13.11190 -12.90278 -12.70646 -12.57969 -12.36007 -12.12059 -11.90927 -11.73637 -11.58488 -11.49680 -10.85959 -10.68506 -10.64876 -10.52320 -10.38596 -10.23303 -10.03797 -9.42649 -9.05651 -8.89998 -8.88425 -8.60223 -8.31331 -8.02106 -7.82858 -7.58253 -5.91239 -3.90446 1.78274 2.17440 2.31242 2.37123 2.89666 3.18749 3.39322 3.46917 3.48942 3.55667 3.95895 4.40185 4.54399 4.59201 4.70686 4.77638 4.85104 5.04324 5.08659 5.25205 5.35803 5.42550 5.48773 5.57438 5.66851 5.68797 5.75235 5.86347 5.90033 6.00524 6.11369 6.18551 6.21985 6.31215 6.43662 6.55995 6.81028 6.83699 6.87082 6.93342 6.97156 7.07025 7.33409 7.46776 7.46953 7.55244 7.88384 7.92340 7.97522 8.04613 8.10056 8.40878 9.07506 9.10471 9.71593 11.19003 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.002015 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.676314 B =13890.361918 C =15286.009667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.382 5.382 3 C 0.075 3.925 4 C -0.307 4.307 5 C 0.343 3.657 6 N -0.718 5.718 7 C 0.132 3.868 8 C 0.113 3.887 9 N -0.748 5.748 10 C 0.513 3.487 11 O -0.493 6.493 12 C -0.121 4.121 13 C 0.079 3.921 14 H 0.072 0.928 15 C -0.491 4.491 16 H 0.051 0.949 17 C 0.077 3.923 18 N -0.881 5.881 19 Si 0.887 3.113 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.288 1.288 23 C -0.021 4.021 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.118 4.118 29 N -0.356 5.356 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.172 0.828 34 H 0.145 0.855 35 H 0.406 0.594 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.394 0.606 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.258 0.742 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.999 16.500 -2.410 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.164 5.164 3 C -0.072 4.072 4 C -0.339 4.339 5 C 0.084 3.916 6 N -0.360 5.360 7 C 0.007 3.993 8 C -0.012 4.012 9 N -0.405 5.405 10 C 0.300 3.700 11 O -0.364 6.364 12 C -0.162 4.162 13 C 0.060 3.940 14 H 0.090 0.910 15 C -0.528 4.528 16 H 0.069 0.931 17 C -0.126 4.126 18 N -0.518 5.518 19 Si 0.715 3.285 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.214 1.214 23 C -0.021 4.021 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.146 4.146 28 C -0.137 4.137 29 N -0.189 5.189 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.189 0.811 34 H 0.163 0.837 35 H 0.241 0.759 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.227 0.773 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.131 0.869 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.837 14.544 -2.480 22.387 hybrid contribution 0.451 0.167 0.978 1.090 sum -16.386 14.711 -1.502 22.072 Atomic orbital electron populations 1.21748 0.74399 1.04160 1.03010 1.47981 1.06027 1.03163 1.59225 1.22381 0.90723 0.93449 1.00614 1.21083 0.97353 0.93173 1.22301 1.19190 0.87272 0.89990 0.95132 1.43426 1.00704 1.07322 1.84550 1.21330 0.80469 0.95856 1.01671 1.21182 0.81968 0.95149 1.02940 1.46019 1.04963 1.09885 1.79635 1.20927 0.86006 0.87454 0.75602 1.90771 1.86208 1.14228 1.45151 1.21793 0.92426 1.00534 1.01418 1.17845 0.84468 0.90918 1.00772 0.90999 1.20714 1.46659 0.92610 0.92853 0.93096 1.24819 0.94197 0.97843 0.95704 1.69922 1.44172 1.10377 1.27344 0.86632 0.77524 0.80496 0.83810 1.19968 1.21031 1.21427 1.20736 0.99201 0.91041 0.91166 1.20944 0.95390 0.98146 0.98857 1.20971 0.95255 1.01114 0.97656 1.20792 0.99307 1.01594 0.95706 1.20982 0.96321 0.98682 0.98641 1.21086 0.94366 0.99671 0.98547 1.77458 0.99452 1.06760 1.35257 0.91155 0.89740 0.89552 0.81081 0.83730 0.75858 0.91758 0.91770 0.91350 0.91247 0.77301 0.91563 0.90440 0.93209 0.86903 0.87702 0.87849 0.87677 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.56 11.47 59.84 0.69 1.25 16 2 N -0.38 -3.70 4.01 -68.18 -0.27 -3.97 16 3 C 0.08 0.62 11.48 -17.24 -0.20 0.42 16 4 C -0.31 -3.08 10.11 -39.82 -0.40 -3.49 16 5 C 0.34 4.20 8.16 -154.54 -1.26 2.93 16 6 N -0.72 -8.02 5.77 -60.06 -0.35 -8.36 16 7 C 0.13 1.29 5.72 -4.04 -0.02 1.27 16 8 C 0.11 1.43 5.79 -4.04 -0.02 1.40 16 9 N -0.75 -10.32 5.56 -60.30 -0.33 -10.66 16 10 C 0.51 9.89 7.58 -10.99 -0.08 9.80 16 11 O -0.49 -12.13 14.98 5.56 0.08 -12.05 16 12 C -0.12 -2.27 4.95 -27.88 -0.14 -2.41 16 13 C 0.08 1.87 1.67 -92.92 -0.16 1.71 16 14 H 0.07 1.96 6.98 -51.93 -0.36 1.60 16 15 C -0.49 -13.12 6.37 -34.44 -0.22 -13.34 16 16 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 17 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 18 N -0.88 -25.99 12.87 55.43 0.71 -25.28 16 19 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 20 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 C -0.02 -0.46 4.77 -104.62 -0.50 -0.95 16 24 C -0.12 -2.30 8.86 -39.58 -0.35 -2.65 16 25 C -0.13 -2.35 10.05 -39.58 -0.40 -2.74 16 26 C -0.16 -2.70 10.05 -39.58 -0.40 -3.10 16 27 C -0.13 -2.36 10.05 -39.58 -0.40 -2.75 16 28 C -0.12 -2.49 9.67 -39.59 -0.38 -2.87 16 29 N -0.36 -4.66 12.59 31.41 0.40 -4.26 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.14 1.20 7.90 -52.48 -0.41 0.78 16 35 H 0.41 4.48 8.60 -40.82 -0.35 4.13 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.39 4.04 8.47 -40.82 -0.35 3.69 16 41 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 42 H 0.08 1.33 7.78 -51.93 -0.40 0.92 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.11 2.17 7.76 -52.49 -0.41 1.76 16 45 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 47 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 48 H 0.11 2.41 7.95 -52.48 -0.42 1.99 16 LS Contribution 407.76 15.07 6.14 6.14 Total: -1.00 -35.97 407.76 -10.30 -46.28 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -7.32 Total: 8.18 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -4.34 Total: -13.42 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.15 Total: -52.53 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.97 -10.30 -46.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567355612.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.294 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds