Wall clock time and date at job start Wed Apr 1 2020 03:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.47221 * 2 1 4 4 C 1.34227 * 116.99953 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99980 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00056 * 179.97438 * 4 3 2 7 7 O 1.42902 * 109.47628 * 179.97438 * 6 4 3 8 8 C 1.42895 * 114.00380 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47143 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.46982 * 64.99742 * 9 8 7 11 11 C 1.34781 * 119.99743 * 180.02562 * 10 9 8 12 12 O 1.21588 * 119.99623 * 355.01230 * 11 10 9 13 13 N 1.34767 * 119.99906 * 175.01640 * 11 10 9 14 14 C 1.46932 * 120.63403 * 4.93825 * 13 11 10 15 15 C 1.53622 * 108.54303 * 126.37249 * 14 13 11 16 16 C 1.53035 * 109.24590 * 54.85266 * 15 14 13 17 17 C 1.52999 * 109.46263 * 178.48837 * 16 15 14 18 18 C 1.50697 * 109.47486 * 295.07506 * 17 16 15 19 19 H 1.08001 * 119.99586 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00316 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99920 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99914 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46780 * 90.00125 * 22 20 18 24 24 H 1.48505 * 109.46606 * 209.99818 * 22 20 18 25 25 H 1.48492 * 109.46876 * 329.99575 * 22 20 18 26 26 C 1.53034 * 109.54160 * 298.51393 * 16 15 14 27 27 C 1.46937 * 120.63111 * 185.22156 * 13 11 10 28 28 H 1.09004 * 109.46568 * 60.00357 * 1 2 3 29 29 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47069 * 300.00670 * 1 2 3 31 31 H 1.08998 * 109.47069 * 239.99330 * 2 1 3 32 32 H 1.09004 * 109.46568 * 119.99643 * 2 1 3 33 33 H 1.09000 * 109.46967 * 59.99936 * 6 4 3 34 34 H 1.09002 * 109.47622 * 300.00100 * 6 4 3 35 35 H 1.08992 * 109.47313 * 59.99928 * 8 7 6 36 36 H 1.09001 * 109.47057 * 299.99921 * 8 7 6 37 37 H 1.08995 * 109.47111 * 185.00048 * 9 8 7 38 38 H 1.09003 * 109.47023 * 305.00082 * 9 8 7 39 39 H 0.96999 * 120.00244 * 0.02562 * 10 9 8 40 40 H 1.08996 * 109.58620 * 246.20539 * 14 13 11 41 41 H 1.08997 * 109.58245 * 6.62936 * 14 13 11 42 42 H 1.09005 * 109.63184 * 294.86513 * 15 14 13 43 43 H 1.08998 * 109.45994 * 174.74626 * 15 14 13 44 44 H 1.09009 * 109.44295 * 58.52805 * 16 15 14 45 45 H 1.09002 * 109.46805 * 55.07348 * 17 16 15 46 46 H 1.08997 * 109.47348 * 175.07303 * 17 16 15 47 47 H 0.96996 * 119.99931 * 180.02562 * 21 20 18 48 48 H 1.08992 * 109.49882 * 301.41054 * 26 16 15 49 49 H 1.09002 * 109.52597 * 181.33004 * 26 16 15 50 50 H 1.08997 * 109.57993 * 353.36815 * 27 13 11 51 51 H 1.08993 * 109.58628 * 113.65009 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9373 0.0000 7 8 5.3479 2.8626 0.0013 8 6 5.9966 4.1358 0.0015 9 6 7.5134 3.9353 0.0023 10 7 7.9217 3.2924 -1.2492 11 6 9.2218 3.0151 -1.4714 12 8 10.0657 3.3793 -0.6755 13 7 9.5863 2.3344 -2.5759 14 6 8.5933 1.9818 -3.5999 15 6 9.0921 2.4920 -4.9604 16 6 10.4926 1.9350 -5.2254 17 6 10.9790 2.4096 -6.5961 18 6 10.1035 1.8200 -7.6717 19 1 9.2825 1.1713 -7.4043 20 6 10.3506 2.1088 -8.9971 21 7 11.3500 2.8992 -9.3226 22 14 9.2648 1.3784 -10.3303 23 1 8.1280 2.2950 -10.6000 24 1 10.0596 1.1969 -11.5715 25 1 8.7441 0.0630 -9.8790 26 6 11.4541 2.4313 -4.1432 27 6 10.9833 1.9251 -2.7762 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.5844 3.4700 0.8895 34 1 3.5853 3.4690 -0.8904 35 1 5.7030 4.6931 0.8910 36 1 5.7046 4.6925 -0.8889 37 1 8.0077 4.9026 0.0920 38 1 7.7959 3.3034 0.8444 39 1 7.2564 3.0664 -1.9179 40 1 8.4727 0.8991 -3.6345 41 1 7.6389 2.4504 -3.3599 42 1 9.1296 3.5814 -4.9516 43 1 8.4131 2.1578 -5.7447 44 1 10.4588 0.8455 -5.2093 45 1 10.9290 3.4975 -6.6427 46 1 12.0088 2.0864 -6.7482 47 1 11.5236 3.1026 -10.2549 48 1 11.4694 3.5211 -4.1422 49 1 12.4565 2.0537 -4.3454 50 1 11.6061 2.3563 -1.9925 51 1 11.0539 0.8380 -2.7424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569216422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:00 Heat of formation + Delta-G solvation = -169.441371 kcal Electronic energy + Delta-G solvation = -29919.601680 eV Core-core repulsion = 25626.147319 eV Total energy + Delta-G solvation = -4293.454361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.88028 -40.19898 -38.61690 -37.40736 -36.86399 -34.79197 -33.92950 -32.34200 -32.11853 -30.86048 -29.98079 -28.36617 -27.63277 -24.60791 -23.71904 -23.13494 -22.67723 -21.69650 -21.61644 -20.04183 -19.20910 -18.30941 -17.79307 -17.44434 -17.26023 -16.72184 -16.51684 -16.25890 -15.78525 -15.33180 -14.75304 -14.54995 -14.48434 -14.11018 -13.99023 -13.60837 -13.58889 -13.32606 -13.19753 -13.01438 -12.82237 -12.71343 -12.51071 -12.29739 -12.13389 -12.07352 -11.75686 -11.72689 -11.16345 -11.00020 -10.94863 -10.78765 -10.77434 -10.66448 -10.45489 -10.33513 -10.08385 -9.90177 -9.60107 -9.23680 -9.08165 -8.93730 -8.34661 -8.15935 -5.98952 -4.00834 1.77019 1.81147 2.80836 3.30748 3.33531 3.37722 3.40348 3.41320 4.01519 4.16856 4.44080 4.45670 4.47066 4.50060 4.55889 4.62461 4.74460 4.79661 4.87001 5.17462 5.18013 5.28485 5.35596 5.37406 5.40634 5.47874 5.54534 5.58288 5.62291 5.75372 5.81301 5.97080 6.06727 6.16499 6.38638 6.41277 6.45989 6.52969 6.55556 6.70761 7.00814 7.03632 7.14164 7.16624 7.34471 7.68868 7.83910 8.01260 8.09902 8.43693 8.76040 9.05777 9.62751 11.12256 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008978 B = 0.002283 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.823000 B =12259.124878 C =14704.937082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.360 6.360 4 C 0.460 3.540 5 O -0.482 6.482 6 C 0.072 3.928 7 O -0.364 6.364 8 C 0.050 3.950 9 C 0.143 3.857 10 N -0.746 5.746 11 C 0.709 3.291 12 O -0.601 6.601 13 N -0.622 5.622 14 C 0.111 3.889 15 C -0.117 4.117 16 C -0.080 4.080 17 C 0.027 3.973 18 C -0.515 4.515 19 H 0.056 0.944 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.129 4.129 27 C 0.130 3.870 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.399 0.601 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.260 0.740 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.397 0.637 21.328 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.278 6.278 4 C 0.300 3.700 5 O -0.367 6.367 6 C -0.006 4.006 7 O -0.283 6.283 8 C -0.027 4.027 9 C 0.019 3.981 10 N -0.406 5.406 11 C 0.410 3.590 12 O -0.480 6.480 13 N -0.359 5.359 14 C -0.013 4.013 15 C -0.156 4.156 16 C -0.099 4.099 17 C -0.010 4.010 18 C -0.553 4.553 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.168 4.168 27 C 0.007 3.993 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.236 0.764 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.033 0.967 46 H 0.035 0.965 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.104 0.896 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.383 0.460 21.778 29.158 hybrid contribution -1.096 -0.386 -1.283 1.731 sum -20.478 0.074 20.495 28.973 Atomic orbital electron populations 1.21821 0.92322 1.03224 1.03605 1.23089 0.95438 0.79528 1.02992 1.86438 1.23792 1.33124 1.84398 1.23182 0.80949 0.92183 0.73650 1.90743 1.60233 1.42656 1.43039 1.21654 0.83342 0.91245 1.04354 1.88037 1.15507 1.29163 1.95627 1.22951 0.92777 0.84980 1.01953 1.21150 0.90825 0.98991 0.87156 1.45168 1.07175 1.66933 1.21285 1.15787 0.82539 0.78736 0.81910 1.90872 1.50163 1.58924 1.48088 1.47319 1.10226 1.58275 1.20033 1.21875 0.90252 1.00155 0.88975 1.21970 0.98804 1.00544 0.94240 1.21177 0.92912 0.99246 0.96547 1.19130 0.96348 0.96460 0.89057 1.21241 1.14089 1.28919 0.91099 0.92627 1.25029 0.95350 0.95341 0.98824 1.69963 1.29321 1.36535 1.17636 0.86648 0.80519 0.79545 0.81603 1.20781 1.21316 1.19911 1.22033 0.99755 1.01164 0.93806 1.21545 0.80428 0.98791 0.98537 0.91314 0.89995 0.91434 0.90872 0.91026 0.88754 0.88632 0.90850 0.91772 0.89673 0.90756 0.76409 0.91537 0.91602 0.92327 0.89868 0.92353 0.96657 0.96547 0.93078 0.92094 0.91164 0.89597 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 10.29 37.16 0.38 -0.24 16 2 C 0.06 0.42 6.19 37.16 0.23 0.65 16 3 O -0.36 -2.87 10.22 -39.25 -0.40 -3.27 16 4 C 0.46 4.33 8.03 36.00 0.29 4.62 16 5 O -0.48 -6.53 16.25 -25.47 -0.41 -6.95 16 6 C 0.07 0.45 6.53 36.00 0.24 0.68 16 7 O -0.36 -3.32 9.82 -55.18 -0.54 -3.86 16 8 C 0.05 0.32 6.07 37.16 0.23 0.55 16 9 C 0.14 1.42 6.06 -4.04 -0.02 1.39 16 10 N -0.75 -9.39 5.41 -65.23 -0.35 -9.74 16 11 C 0.71 11.59 8.30 -86.92 -0.72 10.87 16 12 O -0.60 -11.68 15.77 5.29 0.08 -11.59 16 13 N -0.62 -9.88 2.97 -178.23 -0.53 -10.41 16 14 C 0.11 1.60 6.42 -3.48 -0.02 1.58 16 15 C -0.12 -2.06 5.21 -26.39 -0.14 -2.20 16 16 C -0.08 -1.58 2.10 -90.58 -0.19 -1.77 16 17 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 18 C -0.52 -14.03 8.39 -34.44 -0.29 -14.32 16 19 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 22 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 C -0.13 -2.26 5.36 -26.61 -0.14 -2.41 16 27 C 0.13 2.08 6.44 -3.70 -0.02 2.06 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.40 4.47 5.96 -40.82 -0.24 4.23 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.80 5.64 -51.93 -0.29 0.51 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.54 6.91 -51.93 -0.36 1.18 16 44 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 50 H 0.09 1.42 6.99 -51.93 -0.36 1.06 16 51 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 415.42 15.07 6.26 6.26 Total: -1.00 -36.16 415.42 -9.38 -45.55 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.80 Total: 0.17 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.41 Total: 3.49 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.15 Total: -46.10 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.27 Total: -25.68 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.16 -9.38 -45.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569216422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.893 kcal (2) G-P(sol) polarization free energy of solvation -36.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds