Wall clock time and date at job start Wed Apr 1 2020 03:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.47221 * 2 1 4 4 C 1.34227 * 116.99953 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99980 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00056 * 179.97438 * 4 3 2 7 7 O 1.42902 * 109.47628 * 179.97438 * 6 4 3 8 8 C 1.42895 * 114.00380 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47143 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.46982 * 64.99742 * 9 8 7 11 11 C 1.34781 * 119.99743 * 180.02562 * 10 9 8 12 12 O 1.21588 * 119.99623 * 355.01230 * 11 10 9 13 13 N 1.34767 * 119.99906 * 175.01640 * 11 10 9 14 14 C 1.46932 * 120.63403 * 4.93825 * 13 11 10 15 15 C 1.53622 * 108.54303 * 126.37249 * 14 13 11 16 16 C 1.53035 * 109.24590 * 54.85266 * 15 14 13 17 17 C 1.52999 * 109.46263 * 178.48837 * 16 15 14 18 18 C 1.50697 * 109.47486 * 295.07506 * 17 16 15 19 19 H 1.08001 * 119.99586 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00316 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99920 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99914 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46780 * 90.00125 * 22 20 18 24 24 H 1.48505 * 109.46606 * 209.99818 * 22 20 18 25 25 H 1.48492 * 109.46876 * 329.99575 * 22 20 18 26 26 C 1.53034 * 109.54160 * 298.51393 * 16 15 14 27 27 C 1.46937 * 120.63111 * 185.22156 * 13 11 10 28 28 H 1.09004 * 109.46568 * 60.00357 * 1 2 3 29 29 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47069 * 300.00670 * 1 2 3 31 31 H 1.08998 * 109.47069 * 239.99330 * 2 1 3 32 32 H 1.09004 * 109.46568 * 119.99643 * 2 1 3 33 33 H 1.09000 * 109.46967 * 59.99936 * 6 4 3 34 34 H 1.09002 * 109.47622 * 300.00100 * 6 4 3 35 35 H 1.08992 * 109.47313 * 59.99928 * 8 7 6 36 36 H 1.09001 * 109.47057 * 299.99921 * 8 7 6 37 37 H 1.08995 * 109.47111 * 185.00048 * 9 8 7 38 38 H 1.09003 * 109.47023 * 305.00082 * 9 8 7 39 39 H 0.96999 * 120.00244 * 0.02562 * 10 9 8 40 40 H 1.08996 * 109.58620 * 246.20539 * 14 13 11 41 41 H 1.08997 * 109.58245 * 6.62936 * 14 13 11 42 42 H 1.09005 * 109.63184 * 294.86513 * 15 14 13 43 43 H 1.08998 * 109.45994 * 174.74626 * 15 14 13 44 44 H 1.09009 * 109.44295 * 58.52805 * 16 15 14 45 45 H 1.09002 * 109.46805 * 55.07348 * 17 16 15 46 46 H 1.08997 * 109.47348 * 175.07303 * 17 16 15 47 47 H 0.96996 * 119.99931 * 180.02562 * 21 20 18 48 48 H 1.08992 * 109.49882 * 301.41054 * 26 16 15 49 49 H 1.09002 * 109.52597 * 181.33004 * 26 16 15 50 50 H 1.08997 * 109.57993 * 353.36815 * 27 13 11 51 51 H 1.08993 * 109.58628 * 113.65009 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9373 0.0000 7 8 5.3479 2.8626 0.0013 8 6 5.9966 4.1358 0.0015 9 6 7.5134 3.9353 0.0023 10 7 7.9217 3.2924 -1.2492 11 6 9.2218 3.0151 -1.4714 12 8 10.0657 3.3793 -0.6755 13 7 9.5863 2.3344 -2.5759 14 6 8.5933 1.9818 -3.5999 15 6 9.0921 2.4920 -4.9604 16 6 10.4926 1.9350 -5.2254 17 6 10.9790 2.4096 -6.5961 18 6 10.1035 1.8200 -7.6717 19 1 9.2825 1.1713 -7.4043 20 6 10.3506 2.1088 -8.9971 21 7 11.3500 2.8992 -9.3226 22 14 9.2648 1.3784 -10.3303 23 1 8.1280 2.2950 -10.6000 24 1 10.0596 1.1969 -11.5715 25 1 8.7441 0.0630 -9.8790 26 6 11.4541 2.4313 -4.1432 27 6 10.9833 1.9251 -2.7762 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.5844 3.4700 0.8895 34 1 3.5853 3.4690 -0.8904 35 1 5.7030 4.6931 0.8910 36 1 5.7046 4.6925 -0.8889 37 1 8.0077 4.9026 0.0920 38 1 7.7959 3.3034 0.8444 39 1 7.2564 3.0664 -1.9179 40 1 8.4727 0.8991 -3.6345 41 1 7.6389 2.4504 -3.3599 42 1 9.1296 3.5814 -4.9516 43 1 8.4131 2.1578 -5.7447 44 1 10.4588 0.8455 -5.2093 45 1 10.9290 3.4975 -6.6427 46 1 12.0088 2.0864 -6.7482 47 1 11.5236 3.1026 -10.2549 48 1 11.4694 3.5211 -4.1422 49 1 12.4565 2.0537 -4.3454 50 1 11.6061 2.3563 -1.9925 51 1 11.0539 0.8380 -2.7424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569216422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:59 Heat of formation + Delta-G solvation = -192.711498 kcal Electronic energy + Delta-G solvation = -29920.610749 eV Core-core repulsion = 25626.147319 eV Total energy + Delta-G solvation = -4294.463429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.56542 -41.41852 -39.29760 -38.71153 -37.59984 -35.83905 -35.65614 -33.96355 -32.78925 -32.11383 -30.87552 -29.69990 -28.67625 -26.28904 -24.30756 -24.15596 -23.92294 -23.07475 -22.23270 -21.46437 -20.54069 -19.21544 -18.79031 -18.39010 -18.03920 -17.87065 -17.53029 -17.24695 -16.58123 -16.53040 -16.44798 -15.67955 -15.36034 -15.19446 -15.07805 -14.81529 -14.74474 -14.54182 -14.35373 -13.99489 -13.84467 -13.64367 -13.47776 -13.39048 -13.13336 -12.97329 -12.84655 -12.72966 -12.53875 -12.50315 -12.34279 -12.30537 -12.14856 -11.74928 -11.56611 -11.48400 -11.41832 -11.24981 -10.97912 -10.82904 -10.76434 -10.51032 -10.21010 -9.42761 -8.14952 -6.24475 1.10169 1.28913 1.41988 1.43078 1.53806 1.69341 2.13001 2.43707 2.82328 2.96683 3.18550 3.63418 3.88751 3.94940 3.98394 4.03500 4.06327 4.08858 4.19487 4.21151 4.23545 4.28280 4.34043 4.40946 4.47585 4.54881 4.65617 4.67144 4.80234 4.82828 4.86504 4.91639 4.92290 4.98084 5.10556 5.13935 5.31482 5.33312 5.38800 5.41773 5.50624 5.56214 5.60652 5.82475 5.90953 5.97663 5.99451 6.30634 6.69699 6.92142 6.94827 7.44037 7.54247 8.96940 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008978 B = 0.002283 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.823000 B =12259.124878 C =14704.937082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 O -0.356 6.356 4 C 0.457 3.543 5 O -0.534 6.534 6 C 0.072 3.928 7 O -0.398 6.398 8 C 0.057 3.943 9 C 0.136 3.864 10 N -0.735 5.735 11 C 0.702 3.298 12 O -0.637 6.637 13 N -0.626 5.626 14 C 0.120 3.880 15 C -0.110 4.110 16 C -0.073 4.073 17 C 0.032 3.968 18 C -0.525 4.525 19 H 0.067 0.933 20 C -0.005 4.005 21 N -0.937 5.937 22 Si 0.961 3.039 23 H -0.273 1.273 24 H -0.288 1.288 25 H -0.261 1.261 26 C -0.120 4.120 27 C 0.136 3.864 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.407 0.593 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.062 0.938 45 H -0.015 1.015 46 H -0.013 1.013 47 H 0.260 0.740 48 H 0.046 0.954 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.490 0.583 22.001 32.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 O -0.274 6.274 4 C 0.301 3.699 5 O -0.422 6.422 6 C -0.005 4.005 7 O -0.319 6.319 8 C -0.018 4.018 9 C 0.012 3.988 10 N -0.393 5.393 11 C 0.403 3.597 12 O -0.519 6.519 13 N -0.363 5.363 14 C -0.003 4.003 15 C -0.149 4.149 16 C -0.092 4.092 17 C -0.005 4.005 18 C -0.563 4.563 19 H 0.085 0.915 20 C -0.202 4.202 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.198 1.198 24 H -0.214 1.214 25 H -0.185 1.185 26 C -0.159 4.159 27 C 0.013 3.987 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.245 0.755 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.004 0.996 46 H 0.005 0.995 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.091 0.909 50 H 0.099 0.901 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.545 0.417 22.463 31.828 hybrid contribution -0.130 -0.346 -1.468 1.514 sum -22.675 0.071 20.995 30.902 Atomic orbital electron populations 1.21826 0.90156 1.04358 1.03946 1.23283 0.97137 0.79043 1.02440 1.86457 1.23268 1.33771 1.83862 1.23982 0.80909 0.93089 0.71923 1.90719 1.61278 1.44515 1.45732 1.21932 0.81957 0.89342 1.07231 1.87979 1.17160 1.30688 1.96033 1.22982 0.89915 0.84460 1.04490 1.21361 0.93700 0.98422 0.85276 1.45186 1.05854 1.66029 1.22259 1.16020 0.83459 0.78599 0.81603 1.90843 1.51469 1.60333 1.49257 1.47374 1.10293 1.58256 1.20355 1.21853 0.90851 1.01006 0.86577 1.21841 0.97149 0.99740 0.96145 1.21031 0.94748 0.99345 0.94058 1.19025 0.94781 0.94448 0.92242 1.21654 1.14294 1.28623 0.91739 0.91527 1.25983 0.96787 0.95804 1.01628 1.70115 1.31318 1.38192 1.18157 0.85504 0.78550 0.79210 0.78128 1.19840 1.21397 1.18535 1.21908 0.99523 1.00167 0.94267 1.21439 0.80813 0.99600 0.96852 0.91097 0.88501 0.90881 0.91689 0.91464 0.85449 0.85729 0.87687 0.89703 0.89265 0.92483 0.75488 0.90333 0.88729 0.93472 0.90544 0.91996 0.99643 0.99510 0.93084 0.93558 0.90927 0.90119 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 71.98 0.74 -0.21 16 2 C 0.05 0.68 6.19 71.98 0.45 1.13 16 3 O -0.36 -5.19 10.22 -51.39 -0.53 -5.72 16 4 C 0.46 8.02 8.03 71.23 0.57 8.59 16 5 O -0.53 -14.43 16.25 28.40 0.46 -13.97 16 6 C 0.07 0.68 6.53 71.23 0.47 1.14 16 7 O -0.40 -6.24 9.82 -129.90 -1.28 -7.51 16 8 C 0.06 0.56 6.07 71.98 0.44 0.99 16 9 C 0.14 2.46 6.06 86.38 0.52 2.98 16 10 N -0.73 -17.20 5.41 -478.54 -2.59 -19.79 16 11 C 0.70 22.26 8.30 179.06 1.49 23.74 16 12 O -0.64 -24.63 15.77 -3.99 -0.06 -24.69 16 13 N -0.63 -19.14 2.97 -836.05 -2.48 -21.62 16 14 C 0.12 3.22 6.42 86.51 0.56 3.78 16 15 C -0.11 -3.80 5.21 30.82 0.16 -3.63 16 16 C -0.07 -2.90 2.10 -10.77 -0.02 -2.92 16 17 C 0.03 1.67 4.45 29.85 0.13 1.80 16 18 C -0.53 -28.80 8.39 25.60 0.21 -28.58 16 19 H 0.07 3.43 7.06 -2.91 -0.02 3.41 16 20 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 21 N -0.94 -57.12 13.29 21.45 0.28 -56.84 16 22 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 26 C -0.12 -4.26 5.36 30.67 0.16 -4.09 16 27 C 0.14 4.27 6.44 86.36 0.56 4.83 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 32 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 33 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.41 8.08 5.96 -92.71 -0.55 7.52 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.09 2.02 5.64 -2.39 -0.01 2.00 16 42 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.08 2.74 6.91 -2.39 -0.02 2.72 16 44 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 45 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 46 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 47 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 48 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 49 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 50 H 0.08 2.66 6.99 -2.39 -0.02 2.64 16 51 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -81.33 415.42 3.09 -78.23 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.36 Total: 16.53 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 6.89 Total: 9.72 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -4.78 Total: -98.25 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -1.40 Total: -51.90 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -81.33 3.09 -78.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569216422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.478 kcal (2) G-P(sol) polarization free energy of solvation -81.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds