Wall clock time and date at job start Wed Apr 1 2020 04:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36878 * 126.39829 * 2 1 4 4 C 1.34666 * 106.81597 * 180.23772 * 3 2 1 5 5 N 1.34129 * 108.02165 * 359.60606 * 4 3 2 6 6 C 1.30498 * 109.25671 * 0.40230 * 5 4 3 7 7 C 1.50696 * 125.65003 * 179.77584 * 6 5 4 8 8 H 1.09005 * 109.46977 * 194.97356 * 7 6 5 9 9 N 1.46501 * 109.47327 * 314.97214 * 7 6 5 10 10 C 1.34779 * 120.00142 * 275.00658 * 9 7 6 11 11 O 1.21277 * 119.99871 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00079 * 179.97438 * 10 9 7 13 13 H 1.08997 * 109.47282 * 319.99959 * 12 10 9 14 14 N 1.46900 * 109.47173 * 199.99452 * 12 10 9 15 15 C 1.53004 * 109.46919 * 79.99801 * 12 10 9 16 16 C 1.53004 * 109.47111 * 185.00141 * 15 12 10 17 17 C 1.50699 * 109.47412 * 179.97438 * 16 15 12 18 18 H 1.08007 * 119.99595 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00028 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00063 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99824 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47393 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47212 * 120.00132 * 21 19 17 24 24 H 1.48500 * 109.47248 * 240.00429 * 21 19 17 25 25 C 1.50694 * 109.47266 * 74.97488 * 7 6 5 26 26 C 1.38237 * 119.99864 * 279.72331 * 25 7 6 27 27 C 1.38237 * 119.99668 * 179.78593 * 26 25 7 28 28 C 1.38231 * 120.00215 * 0.44413 * 27 26 25 29 29 C 1.38232 * 120.00117 * 359.81237 * 28 27 26 30 30 C 1.38237 * 119.99980 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.46494 * 89.98487 * 1 2 3 32 32 H 1.08996 * 109.46922 * 209.97661 * 1 2 3 33 33 H 1.08996 * 109.47317 * 329.98169 * 1 2 3 34 34 H 1.08002 * 126.58785 * 359.96564 * 3 2 1 35 35 H 1.08003 * 125.98708 * 179.75770 * 4 3 2 36 36 H 0.97001 * 120.00245 * 94.99850 * 9 7 6 37 37 H 1.00896 * 110.99988 * 300.00168 * 14 12 10 38 38 H 1.00896 * 110.99384 * 63.95460 * 14 12 10 39 39 H 1.09001 * 109.47074 * 304.99471 * 15 12 10 40 40 H 1.08999 * 109.47336 * 65.00068 * 15 12 10 41 41 H 1.09001 * 109.46841 * 300.00115 * 16 15 12 42 42 H 1.08999 * 109.47079 * 59.99770 * 16 15 12 43 43 H 0.97000 * 120.00011 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.00151 * 0.02562 * 26 25 7 45 45 H 1.07998 * 119.99616 * 180.27725 * 27 26 25 46 46 H 1.08001 * 120.00088 * 179.82849 * 28 27 26 47 47 H 1.07997 * 120.00309 * 179.97438 * 29 28 27 48 48 H 1.07996 * 120.00183 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0053 5 7 3.5096 -0.6904 0.0002 6 6 2.2663 -1.0871 0.0002 7 6 1.8019 -2.5207 0.0008 8 1 0.7454 -2.5604 -0.2649 9 7 2.5802 -3.2866 -0.9758 10 6 2.2082 -3.3019 -2.2712 11 8 1.2290 -2.6819 -2.6282 12 6 3.0092 -4.0893 -3.2759 13 1 4.0720 -3.9764 -3.0621 14 7 2.7259 -3.5896 -4.6279 15 6 2.6255 -5.5679 -3.1879 16 6 3.5250 -6.3844 -4.1179 17 6 3.1476 -7.8408 -4.0308 18 1 2.3459 -8.1527 -3.3777 19 6 3.8249 -8.7749 -4.7856 20 7 4.8007 -8.3949 -5.5813 21 14 3.3566 -10.5799 -4.6781 22 1 2.2360 -10.7443 -3.7176 23 1 2.9357 -11.0628 -6.0179 24 1 4.5261 -11.3680 -4.2129 25 6 1.9972 -3.1114 1.3733 26 6 3.2463 -3.5578 1.7623 27 6 3.4264 -4.0957 3.0229 28 6 2.3554 -4.1956 3.8912 29 6 1.1052 -3.7541 3.5003 30 6 0.9260 -3.2122 2.2413 31 1 -0.3632 0.0003 -1.0277 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3634 0.8898 0.5141 34 1 1.9613 2.1345 -0.0005 35 1 4.4369 1.2611 -0.0105 36 1 3.3633 -3.7827 -0.6902 37 1 1.7461 -3.6834 -4.8501 38 1 3.0300 -2.6331 -4.7309 39 1 2.7520 -5.9156 -2.1626 40 1 1.5849 -5.6917 -3.4878 41 1 3.3986 -6.0366 -5.1432 42 1 4.5656 -6.2606 -3.8180 43 1 5.2775 -9.0521 -6.1120 44 1 4.0823 -3.4828 1.0827 45 1 4.4032 -4.4403 3.3284 46 1 2.4955 -4.6183 4.8751 47 1 0.2684 -3.8325 4.1785 48 1 -0.0507 -2.8669 1.9360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583869215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:44 Heat of formation + Delta-G solvation = 46.515284 kcal Electronic energy + Delta-G solvation = -29718.367095 eV Core-core repulsion = 25773.878988 eV Total energy + Delta-G solvation = -3944.488107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 13.51 seconds Orbital eigenvalues (eV) -42.31992 -40.06501 -39.16627 -35.66501 -35.00545 -34.20824 -32.77085 -31.75142 -31.07745 -30.06203 -29.75436 -27.43192 -26.83343 -25.64644 -23.58088 -22.86826 -22.00607 -21.44452 -20.71619 -19.82481 -19.69940 -17.75490 -17.48604 -16.77590 -16.29743 -16.10142 -15.72283 -15.56517 -15.22334 -15.02013 -14.78316 -14.44170 -14.25655 -13.98854 -13.71048 -13.61959 -13.44522 -13.35481 -13.15764 -12.99741 -12.83391 -12.49154 -12.28430 -11.98190 -11.52674 -11.44042 -11.25747 -10.89125 -10.65922 -10.50568 -10.16458 -10.09296 -9.77479 -9.75391 -9.38343 -9.29784 -9.13965 -9.09435 -8.95306 -8.53845 -8.32137 -8.17752 -5.90985 -3.92930 1.01390 1.18092 1.85162 2.48460 2.78729 2.96786 3.29551 3.35816 3.43300 3.47165 3.56443 4.23913 4.39006 4.40762 4.52443 4.56176 4.67252 4.76461 4.82570 4.86078 4.90669 4.99707 5.10425 5.14562 5.24453 5.28342 5.39839 5.44622 5.56443 5.59192 5.67591 5.78612 5.86564 6.08273 6.18920 6.19759 6.28810 6.39982 6.47980 6.61204 6.68055 6.72626 6.95305 7.11896 7.37506 7.58304 7.79779 7.82227 7.97127 7.99626 8.16341 8.27426 8.51502 9.15299 9.70082 11.19954 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.002994 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.298236 B = 9350.330926 C =10937.771976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.059 4.059 4 C -0.029 4.029 5 N -0.473 5.473 6 C 0.202 3.798 7 C 0.276 3.724 8 H 0.104 0.896 9 N -0.709 5.709 10 C 0.491 3.509 11 O -0.555 6.555 12 C 0.081 3.919 13 H 0.100 0.900 14 N -0.805 5.805 15 C -0.095 4.095 16 C 0.031 3.969 17 C -0.521 4.521 18 H 0.052 0.948 19 C 0.057 3.943 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.091 4.091 26 C -0.090 4.090 27 C -0.115 4.115 28 C -0.115 4.115 29 C -0.120 4.120 30 C -0.107 4.107 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.409 0.591 37 H 0.347 0.653 38 H 0.334 0.666 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.035 0.965 42 H 0.014 0.986 43 H 0.258 0.742 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.638 18.570 19.141 27.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.133 5.133 3 C -0.192 4.192 4 C -0.177 4.177 5 N -0.192 5.192 6 C -0.062 4.062 7 C 0.168 3.832 8 H 0.122 0.878 9 N -0.362 5.362 10 C 0.277 3.723 11 O -0.433 6.433 12 C -0.035 4.035 13 H 0.118 0.882 14 N -0.332 5.332 15 C -0.133 4.133 16 C -0.006 4.006 17 C -0.559 4.559 18 H 0.071 0.929 19 C -0.144 4.144 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.093 4.093 26 C -0.108 4.108 27 C -0.133 4.133 28 C -0.133 4.133 29 C -0.138 4.138 30 C -0.126 4.126 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.190 0.810 35 H 0.187 0.813 36 H 0.246 0.754 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.032 0.968 43 H 0.068 0.932 44 H 0.147 0.853 45 H 0.144 0.856 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.201 17.845 18.452 26.660 hybrid contribution -1.182 0.284 0.690 1.398 sum -8.383 18.129 19.143 27.665 Atomic orbital electron populations 1.22081 0.76746 1.04320 1.04146 1.45190 1.07547 1.06449 1.54095 1.22684 0.91447 0.92401 1.12704 1.22305 0.96367 0.91227 1.07850 1.70155 1.18185 1.11831 1.19007 1.23385 0.86203 0.90549 1.06015 1.17650 0.96708 0.82281 0.86587 0.87834 1.46105 1.31906 1.50607 1.07569 1.22858 0.85557 0.80530 0.83329 1.90610 1.27978 1.45217 1.79478 1.21842 0.99194 0.96708 0.85772 0.88229 1.59001 1.25383 1.26000 1.22865 1.21667 1.01400 0.89024 1.01243 1.19022 0.93558 0.92827 0.95226 1.21315 1.17513 0.92593 1.24488 0.92938 1.24992 0.95199 0.98710 0.95466 1.69986 1.22415 1.33731 1.27015 0.86605 0.78300 0.85710 0.77765 1.19862 1.21097 1.21115 1.19607 0.94688 1.00510 0.94448 1.21012 0.96511 0.96771 0.96551 1.21188 0.99248 0.99142 0.93734 1.21218 0.92993 0.99339 0.99728 1.21077 0.97515 0.99152 0.96066 1.20909 0.97880 0.99725 0.94048 0.89977 0.89735 0.89499 0.80950 0.81348 0.75441 0.83935 0.85458 0.92730 0.92861 0.94680 0.96799 0.93180 0.85309 0.85553 0.85921 0.85858 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 10.75 59.85 0.64 1.15 16 2 N -0.45 -4.94 3.15 -121.28 -0.38 -5.32 16 3 C -0.06 -0.60 11.58 -16.56 -0.19 -0.80 16 4 C -0.03 -0.34 11.87 -17.81 -0.21 -0.56 16 5 N -0.47 -6.75 11.23 -10.82 -0.12 -6.87 16 6 C 0.20 2.66 6.68 -155.42 -1.04 1.62 16 7 C 0.28 3.45 2.44 -70.24 -0.17 3.27 16 8 H 0.10 1.30 6.37 -51.93 -0.33 0.97 16 9 N -0.71 -9.77 5.00 -56.07 -0.28 -10.05 16 10 C 0.49 7.96 7.02 -10.99 -0.08 7.88 16 11 O -0.56 -10.05 15.91 5.56 0.09 -9.96 16 12 C 0.08 1.40 3.15 -68.86 -0.22 1.18 16 13 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 14 N -0.80 -14.00 8.44 -5.65 -0.05 -14.05 16 15 C -0.09 -1.94 4.78 -26.73 -0.13 -2.06 16 16 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 17 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 18 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 21 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C -0.09 -1.02 4.94 -104.62 -0.52 -1.54 16 26 C -0.09 -1.00 9.06 -39.58 -0.36 -1.35 16 27 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 28 C -0.11 -1.01 10.05 -39.59 -0.40 -1.40 16 29 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 30 C -0.11 -1.03 9.67 -39.58 -0.38 -1.41 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.53 7.32 -51.93 -0.38 0.15 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.41 5.20 6.86 -40.82 -0.28 4.92 16 37 H 0.35 6.03 8.58 -39.29 -0.34 5.69 16 38 H 0.33 5.21 9.06 -39.29 -0.36 4.85 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.13 1.41 6.90 -52.49 -0.36 1.05 16 45 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.12 0.90 8.04 -52.49 -0.42 0.48 16 LS Contribution 405.47 15.07 6.11 6.11 Total: -1.00 -35.70 405.47 -10.37 -46.07 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -7.06 Total: 13.44 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -4.39 Total: -9.86 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.10 Total: -62.64 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.70 -10.37 -46.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583869215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.585 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.51 seconds