Wall clock time and date at job start Wed Apr 1 2020 04:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36883 * 126.39606 * 2 1 4 4 C 1.34672 * 106.81906 * 180.25403 * 3 2 1 5 5 N 1.34127 * 108.01781 * 359.74649 * 4 3 2 6 6 C 1.30498 * 109.25700 * 0.02562 * 5 4 3 7 7 C 1.50703 * 125.65135 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47448 * 165.02181 * 7 6 5 9 9 N 1.46501 * 109.46944 * 45.01840 * 7 6 5 10 10 C 1.34781 * 120.00070 * 85.00587 * 9 7 6 11 11 O 1.21278 * 119.99531 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00261 * 180.02562 * 10 9 7 13 13 H 1.09005 * 109.47168 * 319.99959 * 12 10 9 14 14 N 1.46901 * 109.47231 * 199.99856 * 12 10 9 15 15 C 1.53006 * 109.47471 * 79.99562 * 12 10 9 16 16 C 1.52999 * 109.46997 * 185.00271 * 15 12 10 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 12 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48490 * 109.47405 * 60.00219 * 21 19 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 25 25 C 1.50705 * 109.46932 * 285.02317 * 7 6 5 26 26 C 1.38229 * 119.99829 * 79.72482 * 25 7 6 27 27 C 1.38240 * 119.99826 * 179.78782 * 26 25 7 28 28 C 1.38238 * 119.99592 * 0.44097 * 27 26 25 29 29 C 1.38233 * 120.00141 * 359.81539 * 28 27 26 30 30 C 1.38233 * 119.99536 * 259.99469 * 25 7 6 31 31 H 1.08992 * 109.47128 * 270.18114 * 1 2 3 32 32 H 1.08994 * 109.47387 * 30.18463 * 1 2 3 33 33 H 1.09004 * 109.46752 * 150.18706 * 1 2 3 34 34 H 1.08001 * 126.59066 * 359.97438 * 3 2 1 35 35 H 1.07997 * 125.99015 * 179.76356 * 4 3 2 36 36 H 0.97005 * 120.00288 * 264.99911 * 9 7 6 37 37 H 1.00899 * 110.99814 * 176.04311 * 14 12 10 38 38 H 1.00892 * 110.99802 * 299.99727 * 14 12 10 39 39 H 1.09000 * 109.46866 * 65.00059 * 15 12 10 40 40 H 1.09001 * 109.46611 * 305.00176 * 15 12 10 41 41 H 1.09000 * 109.47486 * 60.00167 * 16 15 12 42 42 H 1.09001 * 109.47362 * 299.99445 * 16 15 12 43 43 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.00827 * 359.97438 * 26 25 7 45 45 H 1.07999 * 120.00272 * 180.26891 * 27 26 25 46 46 H 1.08002 * 119.99872 * 179.83374 * 28 27 26 47 47 H 1.08000 * 119.99910 * 180.02562 * 29 28 27 48 48 H 1.07997 * 120.00216 * 359.97438 * 30 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6506 -0.0057 5 7 3.5096 -0.6902 -0.0035 6 6 2.2664 -1.0869 0.0029 7 6 1.8019 -2.5206 0.0078 8 1 0.7467 -2.5597 0.2782 9 7 2.5846 -3.2841 0.9828 10 6 2.2183 -3.2964 2.2798 11 8 1.2410 -2.6750 2.6397 12 6 3.0237 -4.0813 3.2829 13 1 3.3301 -5.0294 2.8408 14 7 2.2045 -4.3389 4.4748 15 6 4.2645 -3.2793 3.6805 16 6 5.1452 -4.1257 4.6018 17 6 6.3671 -3.3355 4.9938 18 1 6.5042 -2.3318 4.6194 19 6 7.3125 -3.8959 5.8264 20 7 7.1483 -5.1201 6.2780 21 14 8.8267 -2.9161 6.3130 22 1 8.4097 -1.6809 7.0238 23 1 9.6816 -3.7377 7.2071 24 1 9.5930 -2.5512 5.0943 25 6 1.9913 -3.1146 -1.3642 26 6 3.2411 -3.5514 -1.7617 27 6 3.4139 -4.1004 -3.0186 28 6 2.3388 -4.2041 -3.8813 29 6 1.0901 -3.7624 -3.4857 30 6 0.9163 -3.2176 -2.2272 31 1 -0.3633 0.0032 1.0276 32 1 -0.3634 0.8883 -0.5167 33 1 -0.3633 -0.8917 -0.5110 34 1 1.9612 2.1346 -0.0004 35 1 4.4368 1.2612 -0.0109 36 1 3.3664 -3.7809 0.6949 37 1 2.6998 -4.9187 5.1355 38 1 1.9077 -3.4750 4.9031 39 1 3.9591 -2.3723 4.2022 40 1 4.8264 -3.0120 2.7855 41 1 5.4506 -5.0327 4.0800 42 1 4.5834 -4.3931 5.4967 43 1 7.8136 -5.5144 6.8634 44 1 4.0820 -3.4667 -1.0893 45 1 4.3895 -4.4457 -3.3276 46 1 2.4743 -4.6306 -4.8642 47 1 0.2500 -3.8439 -4.1595 48 1 -0.0593 -2.8727 -1.9180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583869217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:08 Heat of formation + Delta-G solvation = 22.963446 kcal Electronic energy + Delta-G solvation = -29863.195469 eV Core-core repulsion = 25917.686078 eV Total energy + Delta-G solvation = -3945.509391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 8.93 seconds Orbital eigenvalues (eV) -43.13858 -41.12104 -40.03191 -37.23690 -36.32015 -34.96418 -34.85334 -32.68352 -31.78818 -31.70443 -30.55646 -28.52823 -27.91953 -26.94110 -25.36864 -23.71491 -22.78208 -22.48821 -22.15852 -21.19870 -20.62652 -19.08809 -18.29934 -18.24516 -17.91975 -17.01461 -16.68102 -16.49030 -16.20431 -16.11109 -15.80641 -15.70917 -15.39062 -15.27992 -14.85323 -14.66296 -14.39812 -14.27660 -14.21877 -13.96982 -13.85432 -13.60336 -13.53477 -13.47430 -13.23175 -12.95601 -12.70538 -12.55107 -12.14982 -11.93681 -11.84585 -11.74850 -11.34073 -10.95841 -10.87426 -10.57050 -10.55797 -10.40833 -9.84224 -9.83146 -9.67773 -9.33239 -8.22588 -6.32888 0.28622 0.48252 1.03584 1.37945 1.39913 1.47203 1.49681 1.79737 2.06969 2.26759 2.39188 2.83639 3.10561 3.40487 3.56622 3.70213 3.75009 3.76520 3.90737 4.02928 4.07813 4.12572 4.21474 4.24545 4.28405 4.34228 4.54059 4.59089 4.61309 4.63031 4.68502 4.75907 4.81136 4.98962 5.04270 5.10210 5.21494 5.30919 5.44065 5.51564 5.59700 5.61288 5.63194 5.78656 5.82147 6.01467 6.05577 6.19786 6.20446 6.39162 6.44902 6.81094 7.08714 7.14934 7.35790 8.88003 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010864 B = 0.002966 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.793297 B = 9436.951953 C = 9843.627734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.453 5.453 3 C -0.045 4.045 4 C -0.064 4.064 5 N -0.508 5.508 6 C 0.180 3.820 7 C 0.283 3.717 8 H 0.106 0.894 9 N -0.703 5.703 10 C 0.535 3.465 11 O -0.563 6.563 12 C 0.083 3.917 13 H 0.110 0.890 14 N -0.825 5.825 15 C -0.116 4.116 16 C 0.033 3.967 17 C -0.548 4.548 18 H 0.049 0.951 19 C 0.008 3.992 20 N -0.924 5.924 21 Si 0.958 3.042 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.269 1.269 25 C -0.103 4.103 26 C -0.110 4.110 27 C -0.126 4.126 28 C -0.116 4.116 29 C -0.120 4.120 30 C -0.111 4.111 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.211 0.789 35 H 0.178 0.822 36 H 0.411 0.589 37 H 0.354 0.646 38 H 0.343 0.657 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.003 0.997 42 H 0.005 0.995 43 H 0.265 0.735 44 H 0.115 0.885 45 H 0.138 0.862 46 H 0.148 0.852 47 H 0.152 0.848 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.997 6.900 -22.510 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.135 5.135 3 C -0.179 4.179 4 C -0.212 4.212 5 N -0.227 5.227 6 C -0.084 4.084 7 C 0.176 3.824 8 H 0.124 0.876 9 N -0.356 5.356 10 C 0.322 3.678 11 O -0.441 6.441 12 C -0.033 4.033 13 H 0.128 0.872 14 N -0.356 5.356 15 C -0.156 4.156 16 C -0.004 4.004 17 C -0.586 4.586 18 H 0.067 0.933 19 C -0.191 4.191 20 N -0.564 5.564 21 Si 0.782 3.218 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.194 1.194 25 C -0.105 4.105 26 C -0.128 4.128 27 C -0.144 4.144 28 C -0.134 4.134 29 C -0.138 4.138 30 C -0.129 4.129 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.227 0.773 35 H 0.195 0.805 36 H 0.249 0.751 37 H 0.169 0.831 38 H 0.156 0.844 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.022 0.978 42 H 0.024 0.976 43 H 0.074 0.926 44 H 0.133 0.867 45 H 0.155 0.845 46 H 0.165 0.835 47 H 0.170 0.830 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.630 6.321 -22.626 28.782 hybrid contribution 1.726 1.368 1.205 2.510 sum -14.904 7.689 -21.421 27.205 Atomic orbital electron populations 1.22371 0.74546 1.06528 1.04455 1.45449 1.08958 1.05895 1.53193 1.23242 0.90704 0.93766 1.10219 1.22695 0.98057 0.90969 1.09457 1.70077 1.19601 1.13233 1.19804 1.23496 0.86377 0.91420 1.07111 1.17713 0.96021 0.81867 0.86810 0.87576 1.45859 1.32024 1.50875 1.06799 1.20715 0.83999 0.80141 0.82978 1.90582 1.28702 1.45105 1.79677 1.21369 0.90863 0.99063 0.91958 0.87174 1.58770 1.43770 1.22854 1.10188 1.22066 0.95377 0.98129 0.99981 1.18941 0.93336 0.94406 0.93691 1.21559 1.06721 1.00831 1.29453 0.93256 1.25834 1.01351 0.95979 0.95899 1.70044 1.36756 1.15228 1.34386 0.85614 0.79089 0.78641 0.78413 1.19660 1.20403 1.19406 1.19580 0.95371 1.01447 0.94068 1.21054 0.96387 0.98018 0.97349 1.21410 1.00401 0.99160 0.93437 1.21571 0.92671 0.98708 1.00426 1.21448 0.98380 0.97997 0.95926 1.21191 0.98185 0.99382 0.94189 0.90590 0.86375 0.88492 0.77274 0.80497 0.75115 0.83122 0.84414 0.94391 0.92501 0.97842 0.97641 0.92621 0.86702 0.84461 0.83466 0.83037 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 10.75 127.77 1.37 2.23 16 2 N -0.45 -10.36 3.15 -537.62 -1.69 -12.05 16 3 C -0.05 -0.99 11.58 83.09 0.96 -0.03 16 4 C -0.06 -1.77 11.87 83.52 0.99 -0.78 16 5 N -0.51 -16.60 11.23 -188.13 -2.11 -18.71 16 6 C 0.18 5.11 6.68 138.13 0.92 6.03 16 7 C 0.28 7.26 2.43 43.50 0.11 7.36 16 8 H 0.11 2.62 6.38 -2.39 -0.02 2.61 16 9 N -0.70 -20.48 5.00 -449.68 -2.25 -22.72 16 10 C 0.53 18.52 7.04 87.65 0.62 19.14 16 11 O -0.56 -21.86 15.91 -3.02 -0.05 -21.90 16 12 C 0.08 2.97 3.21 44.17 0.14 3.11 16 13 H 0.11 3.67 8.14 -2.38 -0.02 3.65 16 14 N -0.82 -29.32 8.94 -171.79 -1.54 -30.86 16 15 C -0.12 -4.93 4.78 30.60 0.15 -4.78 16 16 C 0.03 1.72 4.74 29.85 0.14 1.86 16 17 C -0.55 -31.49 9.11 25.60 0.23 -31.26 16 18 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 19 C 0.01 0.46 5.46 84.66 0.46 0.93 16 20 N -0.92 -55.27 13.29 21.45 0.28 -54.98 16 21 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 C -0.10 -2.25 4.94 -19.87 -0.10 -2.35 16 26 C -0.11 -2.45 9.04 22.27 0.20 -2.25 16 27 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 28 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 29 C -0.12 -1.64 10.05 22.27 0.22 -1.41 16 30 C -0.11 -1.84 9.67 22.27 0.22 -1.62 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.12 0.84 8.14 -2.39 -0.02 0.83 16 33 H 0.10 1.05 7.33 -2.38 -0.02 1.04 16 34 H 0.21 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.18 4.22 8.06 -2.91 -0.02 4.20 16 36 H 0.41 11.16 6.89 -92.70 -0.64 10.53 16 37 H 0.35 12.68 7.55 -89.69 -0.68 12.00 16 38 H 0.34 12.47 8.58 -89.70 -0.77 11.70 16 39 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.01 0.28 6.87 -2.39 -0.02 0.27 16 43 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.11 2.81 6.93 -2.91 -0.02 2.79 16 45 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 48 H 0.14 1.65 8.04 -2.91 -0.02 1.62 16 Total: -1.00 -76.69 403.57 0.67 -76.02 By element: Atomic # 1 Polarization: 46.81 SS G_CDS: -1.08 Total: 45.72 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 7.09 Total: -7.33 kcal Atomic # 7 Polarization: -132.01 SS G_CDS: -7.31 Total: -139.32 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.05 Total: -21.90 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -76.69 0.67 -76.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583869217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.980 kcal (2) G-P(sol) polarization free energy of solvation -76.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.93 seconds