Wall clock time and date at job start Wed Apr 1 2020 01:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47339 * 2 1 4 4 C 1.46492 * 119.99812 * 269.99959 * 3 2 1 5 5 C 1.50697 * 109.47254 * 269.99513 * 4 3 2 6 6 O 1.21291 * 120.00176 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00349 * 179.97438 * 5 4 3 8 8 C 1.46502 * 120.00071 * 355.27390 * 7 5 4 9 9 C 1.50693 * 109.47320 * 89.99453 * 8 7 5 10 10 H 1.08005 * 119.99685 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00209 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00118 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99791 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.46926 * 90.00079 * 13 11 9 15 15 H 1.48500 * 109.46966 * 209.99339 * 13 11 9 16 16 H 1.48493 * 109.47468 * 329.99953 * 13 11 9 17 17 C 1.39925 * 120.00311 * 175.26970 * 7 5 4 18 18 C 1.38869 * 120.07041 * 291.85467 * 17 7 5 19 19 C 1.38121 * 119.93040 * 179.74626 * 18 17 7 20 20 C 1.38279 * 120.06481 * 0.52335 * 19 18 17 21 21 C 1.38278 * 120.14549 * 359.74827 * 20 19 18 22 22 C 1.38112 * 120.07241 * 359.97438 * 21 20 19 23 23 C 1.40802 * 119.99760 * 89.99719 * 3 2 1 24 24 C 1.40223 * 126.06173 * 179.97438 * 23 3 2 25 25 N 1.30870 * 108.36038 * 180.02562 * 24 23 3 26 26 N 1.40072 * 108.35733 * 359.74642 * 25 24 23 27 27 C 1.46505 * 126.06921 * 180.26847 * 26 25 24 28 28 C 1.35705 * 126.06851 * 0.02562 * 23 3 2 29 29 H 1.09004 * 109.47734 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47351 * 300.00231 * 1 2 3 31 31 H 1.09001 * 109.47158 * 59.99804 * 1 2 3 32 32 H 1.08996 * 109.47351 * 239.99769 * 2 1 3 33 33 H 1.09002 * 109.46648 * 119.99624 * 2 1 3 34 34 H 1.09004 * 109.47579 * 30.00037 * 4 3 2 35 35 H 1.09002 * 109.47037 * 150.00286 * 4 3 2 36 36 H 1.09001 * 109.46999 * 209.99986 * 8 7 5 37 37 H 1.09002 * 109.46444 * 329.99415 * 8 7 5 38 38 H 0.96999 * 120.00450 * 179.97438 * 12 11 9 39 39 H 1.07996 * 120.03710 * 0.02562 * 18 17 7 40 40 H 1.08003 * 119.96696 * 180.27217 * 19 18 17 41 41 H 1.08006 * 119.92805 * 179.71995 * 20 19 18 42 42 H 1.08003 * 119.96827 * 179.97438 * 21 20 19 43 43 H 1.08000 * 120.03788 * 179.97438 * 22 21 20 44 44 H 1.07999 * 125.82311 * 0.05925 * 24 23 3 45 45 H 1.09003 * 109.47132 * 270.17652 * 27 26 25 46 46 H 1.08997 * 109.46969 * 30.17769 * 27 26 25 47 47 H 1.09002 * 109.47098 * 150.17580 * 27 26 25 48 48 H 1.07992 * 126.22669 * 359.97438 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8350 -1.7037 6 8 4.4235 1.1558 -1.0213 7 7 4.1387 2.3770 -2.8515 8 6 3.2212 3.1093 -3.7279 9 6 3.2100 4.5653 -3.3395 10 1 3.8253 4.9107 -2.5218 11 6 2.4152 5.4566 -4.0286 12 7 2.4052 6.7271 -3.6893 13 14 1.3517 4.8591 -5.4432 14 1 0.0199 4.4551 -4.9250 15 1 1.1861 5.9527 -6.4342 16 1 2.0032 3.6948 -6.0951 17 6 5.4854 2.2405 -3.2061 18 6 6.4684 2.8857 -2.4672 19 6 7.7972 2.7447 -2.8166 20 6 8.1483 1.9709 -3.9075 21 6 7.1715 1.3317 -4.6487 22 6 5.8414 1.4640 -4.3011 23 6 2.2530 2.0449 1.2194 24 6 2.7183 3.3594 1.3675 25 7 2.8115 3.6220 2.6462 26 7 2.4040 2.4880 3.3604 27 6 2.3510 2.3601 4.8189 28 6 2.0699 1.5257 2.4598 29 1 -0.3635 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.5817 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.5510 3.0116 -4.7622 37 1 2.2166 2.6985 -3.6266 38 1 1.8463 7.3543 -4.1743 39 1 6.1945 3.4933 -1.6174 40 1 8.5625 3.2426 -2.2397 41 1 9.1877 1.8658 -4.1815 42 1 7.4489 0.7284 -5.5005 43 1 5.0789 0.9649 -4.8807 44 1 2.9583 4.0393 0.5635 45 1 3.3070 1.9866 5.1858 46 1 2.1476 3.3350 5.2619 47 1 1.5590 1.6636 5.0940 48 1 1.7182 0.5309 2.6897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594037054.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:29 Heat of formation + Delta-G solvation = 98.801429 kcal Electronic energy + Delta-G solvation = -30364.673798 eV Core-core repulsion = 26422.452989 eV Total energy + Delta-G solvation = -3942.220809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.79543 -39.86470 -38.08058 -36.27948 -35.03668 -32.83512 -32.60722 -30.98086 -30.52586 -30.10451 -29.27888 -27.68866 -26.64936 -25.56155 -22.87888 -22.76347 -22.07475 -21.81158 -20.56997 -19.74633 -18.64805 -17.29212 -17.04055 -16.97046 -16.21446 -15.61725 -15.36775 -15.14614 -14.86459 -14.70631 -14.22696 -14.20315 -13.94655 -13.68372 -13.33712 -13.29439 -13.02578 -12.81898 -12.73771 -12.48652 -12.43731 -12.21736 -12.17205 -11.94343 -11.77885 -11.43154 -11.29282 -11.06153 -10.89181 -10.79445 -10.74056 -10.38244 -10.33218 -9.88659 -9.68458 -9.10700 -9.02483 -8.75730 -8.61400 -8.52237 -7.68523 -6.68190 -6.24328 -4.27102 1.72959 1.81996 2.17695 2.71242 3.14580 3.20643 3.23006 3.24758 3.29925 3.47353 3.90524 4.20293 4.23481 4.74606 5.00944 5.05180 5.16798 5.18787 5.25839 5.28395 5.32994 5.34463 5.40099 5.45952 5.48102 5.55299 5.64408 5.78277 5.80278 5.86193 5.96171 5.96468 5.99652 6.06779 6.09009 6.31894 6.37056 6.43885 6.54724 6.72163 6.74507 6.87316 6.97875 7.13252 7.24052 7.37848 7.48035 7.65210 7.87797 8.01630 8.06902 8.33842 8.78888 8.89168 9.33763 10.87877 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008159 B = 0.004333 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3431.054801 B = 6459.838918 C = 7865.397252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.138 3.862 3 N -0.602 5.602 4 C 0.123 3.877 5 C 0.498 3.502 6 O -0.540 6.540 7 N -0.559 5.559 8 C 0.210 3.790 9 C -0.543 4.543 10 H 0.080 0.920 11 C 0.080 3.920 12 N -0.886 5.886 13 Si 0.868 3.132 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.264 1.264 17 C 0.176 3.824 18 C -0.101 4.101 19 C -0.113 4.113 20 C -0.135 4.135 21 C -0.116 4.116 22 C -0.128 4.128 23 C 0.084 3.916 24 C 0.022 3.978 25 N -0.278 5.278 26 N -0.385 5.385 27 C 0.115 3.885 28 C -0.037 4.037 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.036 0.964 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.183 0.817 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 -12.761 6.941 14.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.319 5.319 4 C -0.004 4.004 5 C 0.285 3.715 6 O -0.417 6.417 7 N -0.288 5.288 8 C 0.090 3.910 9 C -0.581 4.581 10 H 0.098 0.902 11 C -0.124 4.124 12 N -0.523 5.523 13 Si 0.694 3.306 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.189 1.189 17 C 0.085 3.915 18 C -0.121 4.121 19 C -0.131 4.131 20 C -0.153 4.153 21 C -0.134 4.134 22 C -0.148 4.148 23 C -0.022 4.022 24 C -0.166 4.166 25 N -0.100 5.100 26 N -0.174 5.174 27 C -0.027 4.027 28 C -0.183 4.183 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.200 0.800 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.103 -12.147 8.190 14.651 hybrid contribution -0.798 -0.601 -1.599 1.885 sum -0.901 -12.748 6.592 14.380 Atomic orbital electron populations 1.22273 0.97105 1.01188 1.02506 1.21133 0.92921 0.82509 1.02038 1.45346 1.73568 1.12435 1.00509 1.21192 0.92588 1.00516 0.86083 1.21607 0.91252 0.78818 0.79799 1.90645 1.58746 1.38882 1.53446 1.45730 1.07202 1.53465 1.22449 1.19932 0.88049 0.92836 0.90188 1.21300 1.27493 0.90083 1.19263 0.90161 1.24835 0.96248 0.94656 0.96654 1.69878 1.39290 1.02410 1.40684 0.86982 0.81430 0.79199 0.83000 1.19717 1.20812 1.18883 1.17551 0.84295 0.95027 0.94668 1.21266 0.92552 0.98137 1.00126 1.20969 0.95644 0.99135 0.97380 1.21014 0.98938 0.98998 0.96357 1.20880 0.92486 1.00283 0.99769 1.21175 0.96445 0.99042 0.98142 1.17636 1.05811 0.92658 0.86079 1.23701 1.02876 0.95719 0.94354 1.77206 1.20829 1.07452 1.04545 1.47992 1.54002 1.09697 1.05682 1.21636 1.02351 1.03519 0.75173 1.21496 1.12517 0.96064 0.88247 0.92409 0.92554 0.92416 0.91497 0.91749 0.88547 0.86543 0.94570 0.94994 0.92273 0.86166 0.86277 0.86533 0.86333 0.86308 0.80026 0.91560 0.89817 0.90133 0.81840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 10.24 37.16 0.38 -1.44 16 2 C 0.14 1.75 6.15 -4.04 -0.02 1.73 16 3 N -0.60 -9.52 2.13 -173.32 -0.37 -9.89 16 4 C 0.12 2.13 4.59 -5.20 -0.02 2.11 16 5 C 0.50 9.93 7.60 -10.99 -0.08 9.84 16 6 O -0.54 -12.05 16.20 5.55 0.09 -11.96 16 7 N -0.56 -11.44 2.50 -114.74 -0.29 -11.72 16 8 C 0.21 4.48 3.95 -5.20 -0.02 4.46 16 9 C -0.54 -13.74 9.71 -34.44 -0.33 -14.08 16 10 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 11 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.89 -25.09 13.96 55.43 0.77 -24.32 16 13 Si 0.87 19.17 27.47 -169.99 -4.67 14.50 16 14 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 17 C 0.18 3.51 4.74 -83.69 -0.40 3.11 16 18 C -0.10 -1.97 9.56 -39.39 -0.38 -2.35 16 19 C -0.11 -1.84 10.04 -39.61 -0.40 -2.24 16 20 C -0.13 -1.98 10.04 -39.55 -0.40 -2.38 16 21 C -0.12 -1.74 10.04 -39.61 -0.40 -2.13 16 22 C -0.13 -2.24 9.69 -39.39 -0.38 -2.62 16 23 C 0.08 1.40 6.70 -83.89 -0.56 0.84 16 24 C 0.02 0.40 11.14 -17.22 -0.19 0.21 16 25 N -0.28 -4.96 12.57 30.70 0.39 -4.57 16 26 N -0.38 -5.59 4.04 -67.79 -0.27 -5.86 16 27 C 0.12 1.06 11.48 59.85 0.69 1.75 16 28 C -0.04 -0.53 10.67 -16.62 -0.18 -0.71 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.06 0.76 6.88 -51.93 -0.36 0.41 16 34 H 0.10 1.48 7.19 -51.93 -0.37 1.10 16 35 H 0.12 2.16 6.68 -51.93 -0.35 1.82 16 36 H 0.04 0.78 6.92 -51.93 -0.36 0.42 16 37 H 0.03 0.63 5.90 -51.93 -0.31 0.32 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 41 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 43 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.18 3.41 7.32 -52.49 -0.38 3.03 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.16 1.82 7.26 -52.49 -0.38 1.44 16 LS Contribution 403.16 15.07 6.08 6.08 Total: -1.00 -32.66 403.16 -8.24 -40.90 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.17 Total: 8.74 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.80 Total: -1.89 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.23 Total: -56.37 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.67 Total: 14.50 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.66 -8.24 -40.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594037054.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.702 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds