Wall clock time and date at job start Wed Apr 1 2020 01:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46506 * 109.47138 * 2 1 4 4 C 1.46501 * 119.99372 * 269.99750 * 3 2 1 5 5 C 1.50704 * 109.47220 * 269.99559 * 4 3 2 6 6 H 1.07999 * 119.99994 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99991 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00286 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00024 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47109 * 59.99893 * 9 7 5 11 11 H 1.48505 * 109.46953 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46592 * 299.99959 * 9 7 5 13 13 C 1.34771 * 120.00281 * 89.99948 * 3 2 1 14 14 O 1.21274 * 120.00092 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00026 * 359.97438 * 13 3 2 16 16 N 1.46496 * 109.47246 * 180.02562 * 15 13 3 17 17 C 1.39901 * 120.00242 * 179.97438 * 16 15 13 18 18 C 1.40495 * 125.89715 * 0.02562 * 17 16 15 19 19 C 1.35244 * 107.90811 * 180.02562 * 18 17 16 20 20 N 1.35793 * 107.73888 * 359.97438 * 19 18 17 21 21 C 1.40105 * 126.02934 * 180.02562 * 20 19 18 22 22 C 1.38863 * 120.06609 * 359.72378 * 21 20 19 23 23 C 1.38114 * 119.92449 * 179.78817 * 22 21 20 24 24 C 1.38281 * 120.07609 * 0.49125 * 23 22 21 25 25 C 1.50696 * 119.93727 * 179.76592 * 24 23 22 26 26 C 1.38284 * 120.13292 * 359.73985 * 24 23 22 27 27 C 1.38119 * 120.07093 * 0.02562 * 26 24 23 28 28 N 1.31239 * 125.90295 * 180.36737 * 17 16 15 29 29 H 1.08999 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47587 * 300.00280 * 1 2 3 31 31 H 1.09000 * 109.47216 * 60.00371 * 1 2 3 32 32 H 1.09002 * 109.47587 * 239.99720 * 2 1 3 33 33 H 1.09000 * 109.47216 * 119.99629 * 2 1 3 34 34 H 1.08994 * 109.47310 * 30.00287 * 4 3 2 35 35 H 1.09000 * 109.46952 * 150.00291 * 4 3 2 36 36 H 0.97002 * 120.00140 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.46939 * 59.99797 * 15 13 3 38 38 H 1.08997 * 109.46897 * 300.00525 * 15 13 3 39 39 H 0.96999 * 119.99700 * 0.02562 * 16 15 13 40 40 H 1.07999 * 126.04742 * 0.02562 * 18 17 16 41 41 H 1.07997 * 126.12872 * 179.97438 * 19 18 17 42 42 H 1.07989 * 120.03860 * 0.02562 * 22 21 20 43 43 H 1.08008 * 119.96536 * 180.23171 * 23 22 21 44 44 H 1.09007 * 109.47040 * 269.97371 * 25 24 23 45 45 H 1.09002 * 109.47042 * 29.97476 * 25 24 23 46 46 H 1.08993 * 109.47329 * 149.97736 * 25 24 23 47 47 H 1.08001 * 119.96862 * 180.02562 * 26 24 23 48 48 H 1.08004 * 120.03456 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2303 -1.0961 7 6 4.1494 2.3903 -2.8775 8 7 3.3497 3.1271 -3.6173 9 14 5.9135 2.0962 -3.4170 10 1 6.1403 0.6396 -3.5952 11 1 6.1613 2.7973 -4.7025 12 1 6.8412 2.6187 -2.3819 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1671 15 6 1.9912 1.3065 2.4723 16 7 2.3080 2.2042 3.5858 17 6 2.1516 1.7650 4.9048 18 6 1.7021 0.4946 5.3022 19 6 1.6888 0.4623 6.6542 20 7 2.1160 1.6713 7.1011 21 6 2.2500 2.0538 8.4423 22 6 1.9272 1.1611 9.4559 23 6 2.0645 1.5397 10.7770 24 6 2.5132 2.8095 11.0909 25 6 2.6569 3.2210 12.5335 26 6 2.8309 3.7023 10.0838 27 6 2.7003 3.3281 8.7607 28 7 2.3932 2.4706 5.9847 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1386 36 1 3.6759 3.5181 -4.4428 37 1 2.6210 0.4187 2.5302 38 1 0.9431 1.0127 2.5298 39 1 2.6257 3.1034 3.4084 40 1 1.4176 -0.3133 4.6444 41 1 1.3917 -0.3750 7.2682 42 1 1.5728 0.1708 9.2114 43 1 1.8172 0.8447 11.5659 44 1 1.7228 3.6634 12.8799 45 1 2.8912 2.3458 13.1394 46 1 3.4606 3.9516 12.6246 47 1 3.1815 4.6932 10.3321 48 1 2.9482 4.0260 7.9746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594549927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:51 Heat of formation + Delta-G solvation = 77.789934 kcal Electronic energy + Delta-G solvation = -28110.511505 eV Core-core repulsion = 24167.379569 eV Total energy + Delta-G solvation = -3943.131936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48743 -39.51495 -39.19156 -35.88149 -35.24668 -33.62452 -32.80150 -31.53272 -30.57979 -30.15085 -30.08984 -28.13010 -26.48850 -25.68227 -23.41998 -23.08523 -22.54927 -22.41124 -20.76308 -20.00379 -18.54567 -18.38184 -17.02905 -16.45779 -15.99586 -15.69436 -15.62173 -15.53410 -15.25259 -14.94912 -14.69132 -14.30934 -14.07621 -13.98245 -13.80093 -13.55558 -13.45472 -13.28831 -13.04211 -12.69885 -12.56503 -12.48230 -12.07907 -12.05256 -11.89188 -11.64791 -11.38197 -11.23975 -10.96185 -10.88400 -10.68853 -10.56552 -10.52498 -10.16745 -9.69578 -9.34589 -9.32611 -9.09645 -8.59048 -8.45539 -7.77433 -7.49551 -6.06834 -4.11890 0.63859 1.02026 2.06034 2.15782 2.93611 3.24906 3.30954 3.35356 3.35733 3.40368 3.47749 3.94234 4.31225 4.42813 4.48837 4.53753 4.64948 4.77363 4.89636 4.99797 5.13690 5.19521 5.22561 5.24237 5.27879 5.38028 5.43874 5.46360 5.50122 5.55280 5.59645 5.63677 5.68187 5.74122 5.91893 5.98103 6.00830 6.18353 6.23185 6.31395 6.43936 6.48705 6.92317 7.06216 7.13481 7.38840 7.45537 7.65543 7.88762 8.04797 8.19305 8.31707 8.81649 8.96959 9.53240 11.01186 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.001836 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.565545 B =15250.251300 C =16079.726050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.501 3.499 14 O -0.536 6.536 15 C 0.118 3.882 16 N -0.701 5.701 17 C 0.357 3.643 18 C -0.287 4.287 19 C 0.073 3.927 20 N -0.330 5.330 21 C 0.175 3.825 22 C -0.147 4.147 23 C -0.092 4.092 24 C -0.108 4.108 25 C -0.112 4.112 26 C -0.094 4.094 27 C -0.121 4.121 28 N -0.348 5.348 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.417 0.583 40 H 0.153 0.847 41 H 0.176 0.824 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.129 0.871 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 -8.466 27.804 29.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.323 5.323 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.286 3.714 14 O -0.413 6.413 15 C -0.011 4.011 16 N -0.345 5.345 17 C 0.096 3.904 18 C -0.318 4.318 19 C -0.069 4.069 20 N -0.105 5.105 21 C 0.081 3.919 22 C -0.168 4.168 23 C -0.111 4.111 24 C -0.109 4.109 25 C -0.168 4.168 26 C -0.112 4.112 27 C -0.141 4.141 28 N -0.180 5.180 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.257 0.743 40 H 0.170 0.830 41 H 0.193 0.807 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.147 0.853 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.118 -6.814 27.956 29.418 hybrid contribution 0.762 -0.800 -0.976 1.474 sum -5.356 -7.614 26.980 28.541 Atomic orbital electron populations 1.22230 0.96574 1.01598 1.02461 1.21486 0.93666 0.83957 1.02991 1.48216 1.63246 1.13354 1.07477 1.19308 0.96386 0.93686 0.77829 1.21385 0.96872 1.32151 1.06385 0.92459 1.24928 0.97872 0.94861 0.96366 1.69920 1.35743 1.33217 1.14380 0.86554 0.84753 0.78250 0.77843 1.20236 1.21164 1.20179 1.20115 0.79039 0.87090 0.85139 1.90678 1.45914 1.18018 1.86712 1.21119 1.01545 0.93148 0.85263 1.43475 1.74654 1.17873 0.98494 1.19272 0.93530 0.91450 0.86139 1.21242 1.17236 0.98981 0.94307 1.22544 0.99310 0.89976 0.95074 1.45428 1.51898 1.09794 1.03416 1.17510 1.00033 0.94870 0.79448 1.20736 1.04681 0.99527 0.91903 1.20788 0.99098 0.95985 0.95200 1.19942 1.00656 0.94231 0.96080 1.20759 1.02287 1.01897 0.91900 1.20954 0.99245 0.99554 0.91464 1.20932 1.00868 0.94963 0.97331 1.77588 1.33747 1.16383 0.90250 0.91984 0.92990 0.91932 0.89618 0.91570 0.94773 0.93798 0.92628 0.89706 0.89757 0.74349 0.82954 0.80690 0.85353 0.85292 0.91196 0.91556 0.91501 0.85310 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.15 0.38 -1.71 16 2 C 0.10 1.52 5.93 -4.04 -0.02 1.49 16 3 N -0.59 -11.86 2.46 -175.06 -0.43 -12.29 16 4 C 0.25 6.28 5.16 -5.19 -0.03 6.25 16 5 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 9 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.50 9.98 7.74 -10.98 -0.09 9.89 16 14 O -0.54 -13.09 15.25 5.56 0.08 -13.00 16 15 C 0.12 1.72 4.63 -5.19 -0.02 1.70 16 16 N -0.70 -11.17 5.74 -61.24 -0.35 -11.52 16 17 C 0.36 5.36 8.15 -154.60 -1.26 4.10 16 18 C -0.29 -3.39 10.11 -39.80 -0.40 -3.79 16 19 C 0.07 0.76 10.81 -16.86 -0.18 0.58 16 20 N -0.33 -4.30 3.81 -10.59 -0.04 -4.34 16 21 C 0.18 1.99 6.69 -83.62 -0.56 1.43 16 22 C -0.15 -1.25 9.46 -39.40 -0.37 -1.62 16 23 C -0.09 -0.67 9.69 -39.61 -0.38 -1.05 16 24 C -0.11 -0.82 5.88 -104.59 -0.62 -1.43 16 25 C -0.11 -0.55 10.01 36.00 0.36 -0.19 16 26 C -0.09 -0.81 9.69 -39.61 -0.38 -1.20 16 27 C -0.12 -1.35 9.66 -39.40 -0.38 -1.73 16 28 N -0.35 -5.51 11.88 31.41 0.37 -5.14 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 34 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.09 1.09 7.40 -51.93 -0.38 0.71 16 38 H 0.08 1.03 7.18 -51.93 -0.37 0.66 16 39 H 0.42 7.43 7.56 -40.82 -0.31 7.12 16 40 H 0.15 1.41 7.89 -52.49 -0.41 0.99 16 41 H 0.18 1.08 7.05 -52.49 -0.37 0.71 16 42 H 0.13 0.78 6.74 -52.49 -0.35 0.43 16 43 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 44 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 45 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 46 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 47 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 48 H 0.14 1.68 7.70 -52.48 -0.40 1.28 16 LS Contribution 403.56 15.07 6.08 6.08 Total: -1.00 -34.76 403.56 -9.99 -44.75 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.04 Total: 5.01 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -4.38 Total: -0.71 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.29 Total: -58.88 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.76 -9.99 -44.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594549927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.535 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds