Wall clock time and date at job start Wed Apr 1 2020 01:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46506 * 109.47138 * 2 1 4 4 C 1.46501 * 119.99372 * 269.99750 * 3 2 1 5 5 C 1.50704 * 109.47220 * 269.99559 * 4 3 2 6 6 H 1.07999 * 119.99994 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99991 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00286 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00024 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47109 * 59.99893 * 9 7 5 11 11 H 1.48505 * 109.46953 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46592 * 299.99959 * 9 7 5 13 13 C 1.34771 * 120.00281 * 89.99948 * 3 2 1 14 14 O 1.21274 * 120.00092 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00026 * 359.97438 * 13 3 2 16 16 N 1.46496 * 109.47246 * 180.02562 * 15 13 3 17 17 C 1.39901 * 120.00242 * 179.97438 * 16 15 13 18 18 C 1.40495 * 125.89715 * 0.02562 * 17 16 15 19 19 C 1.35244 * 107.90811 * 180.02562 * 18 17 16 20 20 N 1.35793 * 107.73888 * 359.97438 * 19 18 17 21 21 C 1.40105 * 126.02934 * 180.02562 * 20 19 18 22 22 C 1.38863 * 120.06609 * 359.72378 * 21 20 19 23 23 C 1.38114 * 119.92449 * 179.78817 * 22 21 20 24 24 C 1.38281 * 120.07609 * 0.49125 * 23 22 21 25 25 C 1.50696 * 119.93727 * 179.76592 * 24 23 22 26 26 C 1.38284 * 120.13292 * 359.73985 * 24 23 22 27 27 C 1.38119 * 120.07093 * 0.02562 * 26 24 23 28 28 N 1.31239 * 125.90295 * 180.36737 * 17 16 15 29 29 H 1.08999 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47587 * 300.00280 * 1 2 3 31 31 H 1.09000 * 109.47216 * 60.00371 * 1 2 3 32 32 H 1.09002 * 109.47587 * 239.99720 * 2 1 3 33 33 H 1.09000 * 109.47216 * 119.99629 * 2 1 3 34 34 H 1.08994 * 109.47310 * 30.00287 * 4 3 2 35 35 H 1.09000 * 109.46952 * 150.00291 * 4 3 2 36 36 H 0.97002 * 120.00140 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.46939 * 59.99797 * 15 13 3 38 38 H 1.08997 * 109.46897 * 300.00525 * 15 13 3 39 39 H 0.96999 * 119.99700 * 0.02562 * 16 15 13 40 40 H 1.07999 * 126.04742 * 0.02562 * 18 17 16 41 41 H 1.07997 * 126.12872 * 179.97438 * 19 18 17 42 42 H 1.07989 * 120.03860 * 0.02562 * 22 21 20 43 43 H 1.08008 * 119.96536 * 180.23171 * 23 22 21 44 44 H 1.09007 * 109.47040 * 269.97371 * 25 24 23 45 45 H 1.09002 * 109.47042 * 29.97476 * 25 24 23 46 46 H 1.08993 * 109.47329 * 149.97736 * 25 24 23 47 47 H 1.08001 * 119.96862 * 180.02562 * 26 24 23 48 48 H 1.08004 * 120.03456 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0717 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2303 -1.0961 7 6 4.1494 2.3903 -2.8775 8 7 3.3497 3.1271 -3.6173 9 14 5.9135 2.0962 -3.4170 10 1 6.1403 0.6396 -3.5952 11 1 6.1613 2.7973 -4.7025 12 1 6.8412 2.6187 -2.3819 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1671 15 6 1.9912 1.3065 2.4723 16 7 2.3080 2.2042 3.5858 17 6 2.1516 1.7650 4.9048 18 6 1.7021 0.4946 5.3022 19 6 1.6888 0.4623 6.6542 20 7 2.1160 1.6713 7.1011 21 6 2.2500 2.0538 8.4423 22 6 1.9272 1.1611 9.4559 23 6 2.0645 1.5397 10.7770 24 6 2.5132 2.8095 11.0909 25 6 2.6569 3.2210 12.5335 26 6 2.8309 3.7023 10.0838 27 6 2.7003 3.3281 8.7607 28 7 2.3932 2.4706 5.9847 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1386 36 1 3.6759 3.5181 -4.4428 37 1 2.6210 0.4187 2.5302 38 1 0.9431 1.0127 2.5298 39 1 2.6257 3.1034 3.4084 40 1 1.4176 -0.3133 4.6444 41 1 1.3917 -0.3750 7.2682 42 1 1.5728 0.1708 9.2114 43 1 1.8172 0.8447 11.5659 44 1 1.7228 3.6634 12.8799 45 1 2.8912 2.3458 13.1394 46 1 3.4606 3.9516 12.6246 47 1 3.1815 4.6932 10.3321 48 1 2.9482 4.0260 7.9746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594549927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:49 Heat of formation + Delta-G solvation = 56.909045 kcal Electronic energy + Delta-G solvation = -28111.416968 eV Core-core repulsion = 24167.379569 eV Total energy + Delta-G solvation = -3944.037400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.37671 -40.87732 -40.07655 -37.23093 -36.57033 -34.93952 -34.36362 -32.24393 -31.69559 -31.33723 -30.89196 -29.67140 -27.78250 -26.66864 -24.79455 -24.17129 -23.85472 -23.23912 -21.55427 -20.97793 -19.99421 -19.18483 -18.66066 -18.21879 -17.48418 -16.78856 -16.63697 -16.46725 -16.31332 -16.15410 -15.99285 -15.43050 -15.01358 -14.84026 -14.71689 -14.55469 -14.49823 -14.36334 -14.09864 -13.96364 -13.72426 -13.55063 -13.25560 -13.12515 -13.01700 -12.98237 -12.64486 -12.50388 -12.47697 -12.16086 -12.01163 -11.91430 -11.75143 -11.64612 -11.46256 -10.75019 -10.64850 -10.11341 -9.99463 -9.55960 -9.47133 -8.43232 -8.23287 -6.37878 -0.07906 0.36668 1.24991 1.28138 1.35685 1.40079 1.47007 1.70502 1.97959 2.14117 2.38201 2.63820 2.80009 3.06568 3.54437 3.60024 3.86101 3.96804 4.05403 4.07660 4.14308 4.30262 4.36379 4.41470 4.47771 4.48473 4.59836 4.67792 4.69012 4.80418 4.85090 4.90490 4.95194 5.01691 5.05980 5.07992 5.16626 5.21575 5.26264 5.35047 5.43849 5.44559 5.56482 5.65088 5.81971 5.87697 5.97247 6.04923 6.35408 6.53109 6.66102 6.73988 6.97806 7.24379 7.39336 8.83519 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.001836 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.565545 B =15250.251300 C =16079.726050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.491 3.509 14 O -0.594 6.594 15 C 0.137 3.863 16 N -0.717 5.717 17 C 0.337 3.663 18 C -0.297 4.297 19 C 0.084 3.916 20 N -0.335 5.335 21 C 0.141 3.859 22 C -0.140 4.140 23 C -0.090 4.090 24 C -0.106 4.106 25 C -0.111 4.111 26 C -0.103 4.103 27 C -0.147 4.147 28 N -0.396 5.396 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.026 0.974 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.401 0.599 40 H 0.182 0.818 41 H 0.224 0.776 42 H 0.158 0.842 43 H 0.163 0.837 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.140 0.860 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 -12.361 30.946 34.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.326 5.326 4 C 0.141 3.859 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.279 3.721 14 O -0.475 6.475 15 C 0.010 3.990 16 N -0.359 5.359 17 C 0.078 3.922 18 C -0.328 4.328 19 C -0.058 4.058 20 N -0.112 5.112 21 C 0.048 3.952 22 C -0.160 4.160 23 C -0.108 4.108 24 C -0.107 4.107 25 C -0.168 4.168 26 C -0.121 4.121 27 C -0.167 4.167 28 N -0.229 5.229 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.238 0.762 40 H 0.199 0.801 41 H 0.240 0.760 42 H 0.176 0.824 43 H 0.181 0.819 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.158 0.842 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.586 -10.774 31.129 33.593 hybrid contribution 0.865 0.457 -1.779 2.030 sum -5.721 -10.318 29.349 31.632 Atomic orbital electron populations 1.22171 0.94414 1.03757 1.01717 1.21873 0.95425 0.80840 1.04562 1.48209 1.63237 1.15321 1.05798 1.18727 0.95351 0.91537 0.80297 1.21698 0.97930 1.32107 1.06561 0.92680 1.25845 1.02288 0.94500 0.96492 1.70044 1.37764 1.34066 1.14816 0.85494 0.79091 0.79117 0.77260 1.18242 1.20417 1.20631 1.21090 0.77613 0.86615 0.86750 1.90647 1.48407 1.20800 1.87696 1.21099 1.03943 0.92477 0.81506 1.43531 1.75488 1.17419 0.99466 1.19527 0.94401 0.92977 0.85339 1.21590 1.17618 0.98258 0.95306 1.23327 0.97231 0.89952 0.95280 1.45583 1.51924 1.10349 1.03299 1.17904 1.02054 0.95728 0.79507 1.21093 1.03373 1.00070 0.91509 1.21243 0.97748 0.96271 0.95569 1.20336 0.99088 0.94173 0.97077 1.20826 1.02963 1.02820 0.90153 1.21142 0.99473 1.00622 0.90875 1.20915 1.02676 0.95266 0.97831 1.77468 1.35045 1.18666 0.91672 0.88260 0.92013 0.94456 0.90602 0.87421 0.95576 0.98635 0.92443 0.86907 0.86446 0.76236 0.80058 0.75977 0.82449 0.81909 0.90258 0.89898 0.91134 0.84230 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 10.24 71.98 0.74 -2.89 16 2 C 0.09 2.63 5.93 86.38 0.51 3.14 16 3 N -0.59 -24.28 2.46 -826.16 -2.03 -26.31 16 4 C 0.26 14.05 5.16 85.63 0.44 14.49 16 5 C -0.54 -31.35 9.39 25.60 0.24 -31.11 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.46 5.46 84.65 0.46 0.92 16 8 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 9 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 13 C 0.49 20.05 7.74 87.66 0.68 20.72 16 14 O -0.59 -30.94 15.25 -3.01 -0.05 -30.98 16 15 C 0.14 3.82 4.63 85.64 0.40 4.22 16 16 N -0.72 -23.29 5.74 -347.66 -1.99 -25.29 16 17 C 0.34 10.10 8.15 133.43 1.09 11.19 16 18 C -0.30 -6.26 10.11 22.13 0.22 -6.04 16 19 C 0.08 1.52 10.81 83.39 0.90 2.42 16 20 N -0.34 -8.56 3.81 -187.43 -0.71 -9.28 16 21 C 0.14 3.13 6.69 38.12 0.25 3.39 16 22 C -0.14 -1.96 9.46 22.39 0.21 -1.75 16 23 C -0.09 -0.99 9.69 22.25 0.22 -0.78 16 24 C -0.11 -1.36 5.88 -19.84 -0.12 -1.48 16 25 C -0.11 -0.77 10.01 71.23 0.71 -0.06 16 26 C -0.10 -1.78 9.69 22.25 0.22 -1.56 16 27 C -0.15 -3.46 9.66 22.39 0.22 -3.24 16 28 N -0.40 -13.07 11.88 -54.55 -0.65 -13.72 16 29 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.26 7.22 -2.39 -0.02 1.25 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 2.26 8.07 -2.39 -0.02 2.24 16 33 H 0.11 2.10 6.44 -2.39 -0.02 2.09 16 34 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 35 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.11 2.54 7.40 -2.39 -0.02 2.52 16 38 H 0.12 2.51 7.18 -2.39 -0.02 2.49 16 39 H 0.40 15.39 7.56 -92.71 -0.70 14.69 16 40 H 0.18 2.54 7.89 -2.91 -0.02 2.52 16 41 H 0.22 1.58 7.05 -2.91 -0.02 1.56 16 42 H 0.16 1.17 6.74 -2.92 -0.02 1.15 16 43 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 44 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 45 H 0.08 0.34 8.08 -2.39 -0.02 0.32 16 46 H 0.07 0.46 8.08 -2.39 -0.02 0.44 16 47 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 48 H 0.11 3.09 7.70 -2.91 -0.02 3.07 16 Total: -1.00 -83.90 403.56 4.54 -79.35 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.27 Total: 23.48 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 7.39 Total: 11.58 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -5.10 Total: -130.70 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.05 Total: -30.98 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -83.90 4.54 -79.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594549927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.262 kcal (2) G-P(sol) polarization free energy of solvation -83.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds