Wall clock time and date at job start Wed Apr 1 2020 03:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39875 * 125.46387 * 2 1 4 4 C 1.30239 * 110.08830 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.11113 * 179.73787 * 4 3 2 6 6 N 1.46497 * 109.47209 * 90.02132 * 5 4 3 7 7 C 1.34771 * 120.00117 * 179.97438 * 6 5 4 8 8 O 1.21595 * 120.00121 * 355.02195 * 7 6 5 9 9 N 1.34776 * 120.00005 * 175.01681 * 7 6 5 10 10 C 1.46920 * 120.63358 * 4.94505 * 9 7 6 11 11 C 1.53625 * 108.54589 * 126.36432 * 10 9 7 12 12 C 1.53041 * 109.23943 * 54.85970 * 11 10 9 13 13 C 1.53041 * 109.53812 * 298.51304 * 12 11 10 14 14 H 1.09004 * 109.49625 * 301.40869 * 13 12 11 15 15 C 1.50703 * 109.49913 * 181.31776 * 13 12 11 16 16 H 1.07998 * 119.99416 * 0.16071 * 15 13 12 17 17 C 1.37870 * 119.99998 * 180.15695 * 15 13 12 18 18 N 1.31519 * 119.99946 * 180.02562 * 17 15 13 19 19 Si 1.86795 * 120.00060 * 0.02562 * 17 15 13 20 20 H 1.48498 * 109.47134 * 89.99971 * 19 17 15 21 21 H 1.48502 * 109.47204 * 209.99648 * 19 17 15 22 22 H 1.48494 * 109.47282 * 329.99777 * 19 17 15 23 23 C 1.46928 * 120.63131 * 185.22215 * 9 7 6 24 24 C 1.45926 * 107.78329 * 0.02562 * 4 3 2 25 25 C 1.39950 * 134.02905 * 179.97438 * 24 4 3 26 26 C 1.36461 * 119.63724 * 180.02562 * 25 24 4 27 27 C 1.38966 * 120.62690 * 359.97321 * 26 25 24 28 28 C 1.36593 * 120.81820 * 0.05082 * 27 26 25 29 29 C 1.37044 * 125.45992 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46458 * 90.02335 * 1 2 3 31 31 H 1.08997 * 109.47085 * 210.02604 * 1 2 3 32 32 H 1.08999 * 109.47029 * 330.02521 * 1 2 3 33 33 H 1.09001 * 109.47469 * 210.02958 * 5 4 3 34 34 H 1.09004 * 109.46583 * 330.02395 * 5 4 3 35 35 H 0.97004 * 120.00269 * 0.02562 * 6 5 4 36 36 H 1.09002 * 109.59149 * 246.20215 * 10 9 7 37 37 H 1.09001 * 109.58238 * 6.62587 * 10 9 7 38 38 H 1.08996 * 109.63506 * 294.86879 * 11 10 9 39 39 H 1.09004 * 109.45610 * 174.74058 * 11 10 9 40 40 H 1.09001 * 109.46190 * 178.48876 * 12 11 10 41 41 H 1.09003 * 109.45310 * 58.52301 * 12 11 10 42 42 H 0.97001 * 120.00047 * 180.02562 * 18 17 15 43 43 H 1.09007 * 109.58512 * 353.37685 * 23 9 7 44 44 H 1.09000 * 109.58830 * 113.79756 * 23 9 7 45 45 H 1.07999 * 120.18054 * 0.04430 * 25 24 4 46 46 H 1.07996 * 119.68766 * 180.02562 * 26 25 24 47 47 H 1.08004 * 119.59097 * 180.02562 * 27 26 25 48 48 H 1.07994 * 120.07389 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1393 0.0000 4 6 3.5323 0.7939 0.0005 5 6 4.7115 1.7323 -0.0048 6 7 5.0951 2.0425 1.3746 7 6 6.1325 2.8682 1.6161 8 8 6.8064 3.2839 0.6933 9 7 6.4229 3.2333 2.8806 10 6 5.6877 2.6561 4.0141 11 6 6.7027 2.0705 5.0075 12 6 7.7091 3.1551 5.3985 13 6 8.4678 3.6218 4.1540 14 1 8.9775 2.7726 3.6988 15 6 9.4811 4.6666 4.5450 16 1 9.5766 4.9660 5.5783 17 6 10.2860 5.2401 3.5838 18 7 11.1706 6.1515 3.9251 19 14 10.1202 4.7226 1.7966 20 1 9.1206 5.5885 1.1212 21 1 11.4336 4.8603 1.1175 22 1 9.6746 3.3076 1.7303 23 6 7.4767 4.2208 3.1513 24 6 3.5936 -0.6640 0.0003 25 6 4.6398 -1.5936 0.0002 26 6 4.3565 -2.9285 -0.0005 27 6 3.0397 -3.3727 -0.0006 28 6 2.0017 -2.4849 -0.0010 29 6 2.2600 -1.1163 0.0005 30 1 -0.3632 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 5.5494 1.2601 -0.5176 34 1 4.4409 2.6527 -0.5224 35 1 4.6029 1.6529 2.1142 36 1 5.1006 3.4336 4.5029 37 1 5.0267 1.8665 3.6568 38 1 7.2289 1.2359 4.5442 39 1 6.1795 1.7216 5.8979 40 1 8.4151 2.7509 6.1239 41 1 7.1796 3.9999 5.8390 42 1 11.7367 6.5553 3.2487 43 1 7.9964 4.4640 2.2245 44 1 7.0326 5.1233 3.5712 45 1 5.6658 -1.2563 0.0010 46 1 5.1632 -3.6465 -0.0002 47 1 2.8346 -4.4331 -0.0008 48 1 0.9830 -2.8434 -0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595586239.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:11 Heat of formation + Delta-G solvation = 73.746977 kcal Electronic energy + Delta-G solvation = -29737.964758 eV Core-core repulsion = 25794.657506 eV Total energy + Delta-G solvation = -3943.307252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.67936 -39.96794 -37.61729 -37.17177 -35.26680 -33.68496 -32.96534 -31.85926 -30.76959 -30.45646 -30.19331 -28.33882 -25.66543 -25.17899 -24.08811 -23.23802 -22.20400 -22.01377 -20.27078 -20.13524 -18.99252 -17.95622 -17.38524 -17.06352 -16.68009 -16.19772 -15.69898 -15.57415 -15.27689 -14.73615 -14.44095 -14.40042 -13.99513 -13.93643 -13.79687 -13.42388 -13.36887 -13.25373 -12.94340 -12.83477 -12.66675 -12.36189 -12.20137 -12.08522 -12.04372 -11.40052 -11.28359 -11.03859 -11.00535 -10.59602 -10.38949 -10.33419 -10.05579 -9.79134 -9.63562 -9.19745 -9.05680 -9.03252 -8.99500 -8.53774 -8.22925 -7.93218 -6.05146 -4.06900 0.57152 1.15784 1.91810 1.97889 3.09532 3.45404 3.47254 3.53905 3.56115 3.67552 3.94740 4.10622 4.21694 4.27705 4.49282 4.62474 4.68267 4.77798 4.88741 5.00531 5.04890 5.13197 5.19092 5.27479 5.31716 5.37229 5.45512 5.49126 5.55356 5.71830 5.81994 5.97992 6.01881 6.12365 6.13448 6.19863 6.20635 6.43356 6.45635 6.52177 6.59947 6.63315 6.66281 6.76620 6.91292 7.15722 7.26124 7.34079 7.50385 7.78303 8.27133 8.52945 8.94222 8.97725 9.56632 11.06599 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.002651 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.378561 B =10557.607407 C =10644.444378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.408 5.408 3 N -0.230 5.230 4 C 0.085 3.915 5 C 0.222 3.778 6 N -0.748 5.748 7 C 0.705 3.295 8 O -0.589 6.589 9 N -0.623 5.623 10 C 0.116 3.884 11 C -0.135 4.135 12 C -0.099 4.099 13 C 0.004 3.996 14 H 0.031 0.969 15 C -0.516 4.516 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.882 3.118 20 H -0.273 1.273 21 H -0.298 1.298 22 H -0.261 1.261 23 C 0.119 3.881 24 C -0.168 4.168 25 C -0.035 4.035 26 C -0.159 4.159 27 C -0.068 4.068 28 C -0.143 4.143 29 C 0.126 3.874 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.395 0.605 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.265 0.735 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.129 0.871 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.047 -19.599 -6.479 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.196 5.196 3 N -0.044 5.044 4 C -0.093 4.093 5 C 0.096 3.904 6 N -0.408 5.408 7 C 0.406 3.594 8 O -0.467 6.467 9 N -0.359 5.359 10 C -0.008 4.008 11 C -0.174 4.174 12 C -0.137 4.137 13 C -0.016 4.016 14 H 0.049 0.951 15 C -0.554 4.554 16 H 0.095 0.905 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.711 3.289 20 H -0.200 1.200 21 H -0.225 1.225 22 H -0.185 1.185 23 C -0.002 4.002 24 C -0.176 4.176 25 C -0.055 4.055 26 C -0.179 4.179 27 C -0.089 4.089 28 C -0.165 4.165 29 C 0.011 3.989 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.231 0.769 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.149 0.851 46 H 0.146 0.854 47 H 0.147 0.853 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.451 -18.135 -7.235 30.515 hybrid contribution -0.036 -1.061 -0.658 1.249 sum -23.486 -19.195 -7.893 31.343 Atomic orbital electron populations 1.21769 0.73883 1.04337 1.03099 1.48177 1.05866 1.01019 1.64544 1.76630 1.02083 1.08470 1.17226 1.23483 0.92784 0.92091 1.00968 1.19281 0.90758 0.96257 0.84083 1.45192 1.35464 1.52574 1.07613 1.15846 0.80507 0.79236 0.83765 1.90919 1.52408 1.60332 1.43058 1.47649 1.39504 1.45537 1.03232 1.21641 0.94017 0.97102 0.88007 1.22059 0.97821 0.99514 0.97984 1.21429 0.96715 0.96565 0.99009 1.19504 0.93135 0.97083 0.91858 0.95107 1.20952 1.16827 1.21256 0.96366 0.90528 1.25053 0.94639 0.94356 0.99009 1.69899 1.22320 1.27043 1.34232 0.86953 0.76166 0.80943 0.84805 1.19969 1.22516 1.18534 1.22509 0.87250 0.89512 1.00896 1.19759 0.93196 0.92493 1.12132 1.20467 0.98178 0.92017 0.94827 1.20710 0.96784 0.95448 1.04942 1.20751 0.92241 0.99374 0.96515 1.19790 1.00016 0.88723 1.07988 1.18841 0.90524 0.89627 0.99867 0.91149 0.89729 0.89270 0.89201 0.89696 0.76855 0.91546 0.91849 0.91976 0.91804 0.92256 0.92531 0.92565 0.90189 0.91753 0.85139 0.85404 0.85308 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.65 11.40 59.85 0.68 1.33 16 2 N -0.41 -4.19 4.05 -65.47 -0.27 -4.46 16 3 N -0.23 -2.88 12.40 34.84 0.43 -2.45 16 4 C 0.08 1.03 6.80 -80.19 -0.55 0.49 16 5 C 0.22 2.92 6.27 -5.19 -0.03 2.89 16 6 N -0.75 -10.88 5.46 -66.41 -0.36 -11.24 16 7 C 0.71 13.59 8.30 -86.92 -0.72 12.87 16 8 O -0.59 -13.83 15.77 5.28 0.08 -13.75 16 9 N -0.62 -11.85 2.97 -178.23 -0.53 -12.38 16 10 C 0.12 1.67 6.42 -3.49 -0.02 1.65 16 11 C -0.14 -2.01 6.10 -26.39 -0.16 -2.17 16 12 C -0.10 -1.88 5.10 -26.69 -0.14 -2.02 16 13 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 14 H 0.03 0.77 7.21 -51.93 -0.37 0.40 16 15 C -0.52 -14.43 9.15 -34.44 -0.31 -14.74 16 16 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 18 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 19 Si 0.88 23.71 24.31 -169.99 -4.13 19.58 16 20 H -0.27 -7.44 6.92 56.52 0.39 -7.05 16 21 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 22 H -0.26 -7.04 6.53 56.52 0.37 -6.67 16 23 C 0.12 2.73 5.11 -3.71 -0.02 2.71 16 24 C -0.17 -1.90 6.33 -105.20 -0.67 -2.56 16 25 C -0.03 -0.34 10.07 -39.58 -0.40 -0.74 16 26 C -0.16 -1.27 9.97 -39.95 -0.40 -1.67 16 27 C -0.07 -0.48 9.96 -39.91 -0.40 -0.88 16 28 C -0.14 -1.12 9.97 -39.79 -0.40 -1.52 16 29 C 0.13 1.30 6.87 -84.17 -0.58 0.72 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 4.96 5.95 -40.82 -0.24 4.71 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.74 5.64 -51.93 -0.29 0.45 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.08 2.07 2.31 -51.93 -0.12 1.95 16 44 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 46 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 47 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 48 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -36.08 383.75 -9.56 -45.64 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.97 Total: 1.97 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -4.37 Total: -1.71 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.05 Total: -57.51 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.08 Total: -13.75 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.13 Total: 19.58 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.08 -9.56 -45.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595586239.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.386 kcal (2) G-P(sol) polarization free energy of solvation -36.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds