Wall clock time and date at job start Wed Apr 1 2020 03:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.39875 * 125.46507 * 2 1 4 4 C 1.30239 * 110.08787 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.10554 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47327 * 90.02191 * 5 4 3 7 7 C 1.34770 * 119.99993 * 179.97438 * 6 5 4 8 8 O 1.21586 * 120.00252 * 354.91940 * 7 6 5 9 9 N 1.34782 * 120.00112 * 174.92157 * 7 6 5 10 10 C 1.46928 * 120.62725 * 4.74843 * 9 7 6 11 11 C 1.52764 * 109.00602 * 233.58140 * 10 9 7 12 12 C 1.53043 * 109.38241 * 305.59148 * 11 10 9 13 13 C 1.53035 * 109.54294 * 61.23527 * 12 11 10 14 14 H 1.09005 * 109.49333 * 58.58792 * 13 12 11 15 15 C 1.50695 * 109.52483 * 178.66731 * 13 12 11 16 16 H 1.08000 * 120.00317 * 359.85609 * 15 13 12 17 17 C 1.37877 * 119.99942 * 179.85612 * 15 13 12 18 18 N 1.31514 * 120.00232 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 120.00005 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46817 * 60.00276 * 19 17 15 21 21 H 1.48503 * 109.46956 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47081 * 299.99999 * 19 17 15 23 23 C 1.46921 * 120.63278 * 185.02203 * 9 7 6 24 24 C 1.45928 * 107.78295 * 359.97438 * 4 3 2 25 25 C 1.39947 * 134.02407 * 179.97438 * 24 4 3 26 26 C 1.36465 * 119.63487 * 180.02562 * 25 24 4 27 27 C 1.38963 * 120.62695 * 359.97438 * 26 25 24 28 28 C 1.36594 * 120.81819 * 0.02562 * 27 26 25 29 29 C 1.37044 * 125.46103 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.47454 * 90.02543 * 1 2 3 31 31 H 1.09002 * 109.47507 * 210.02641 * 1 2 3 32 32 H 1.08996 * 109.47257 * 330.02529 * 1 2 3 33 33 H 1.09004 * 109.47208 * 210.02045 * 5 4 3 34 34 H 1.08999 * 109.47167 * 330.02147 * 5 4 3 35 35 H 0.96996 * 119.99999 * 0.02562 * 6 5 4 36 36 H 1.08999 * 109.58625 * 353.41043 * 10 9 7 37 37 H 1.08998 * 109.59125 * 113.84401 * 10 9 7 38 38 H 1.08998 * 109.56513 * 185.55023 * 11 10 9 39 39 H 1.09003 * 109.35883 * 65.49743 * 11 10 9 40 40 H 1.09002 * 109.45689 * 301.21197 * 12 11 10 41 41 H 1.08996 * 109.45691 * 181.26243 * 12 11 10 42 42 H 0.96995 * 120.00354 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.58995 * 246.15803 * 23 9 7 44 44 H 1.08999 * 109.58609 * 6.44227 * 23 9 7 45 45 H 1.08000 * 120.18326 * 0.02562 * 25 24 4 46 46 H 1.08002 * 119.68646 * 180.02562 * 26 25 24 47 47 H 1.07998 * 119.59306 * 180.02562 * 27 26 25 48 48 H 1.07994 * 120.07355 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2765 1.1392 0.0000 4 6 3.5323 0.7939 0.0005 5 6 4.7113 1.7324 0.0013 6 7 5.0931 2.0358 1.3827 7 6 6.1301 2.8605 1.6296 8 8 6.8063 3.2791 0.7098 9 7 6.4177 3.2211 2.8960 10 6 5.6768 2.6431 4.0255 11 6 5.1175 3.7753 4.8851 12 6 6.2560 4.7129 5.2935 13 6 6.8909 5.3229 4.0418 14 1 6.1326 5.8647 3.4765 15 6 7.9904 6.2710 4.4457 16 1 8.2131 6.4257 5.4911 17 6 8.7120 6.9410 3.4806 18 7 8.4405 6.7531 2.2076 19 14 10.0754 8.1158 3.9812 20 1 11.1072 7.3768 4.7522 21 1 10.6932 8.7039 2.7656 22 1 9.5100 9.2001 4.8237 23 6 7.4740 4.2040 3.1729 24 6 3.5935 -0.6641 0.0016 25 6 4.6397 -1.5936 0.0020 26 6 4.3564 -2.9285 0.0025 27 6 3.0397 -3.3727 0.0031 28 6 2.0016 -2.4849 0.0026 29 6 2.2600 -1.1162 0.0005 30 1 -0.3634 -0.0005 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 5.5500 1.2625 -0.5126 34 1 4.4415 2.6552 -0.5122 35 1 4.6000 1.6427 2.1197 36 1 4.8562 2.0320 3.6497 37 1 6.3473 2.0289 4.6264 38 1 4.6506 3.3594 5.7779 39 1 4.3759 4.3318 4.3119 40 1 7.0092 4.1506 5.8455 41 1 5.8620 5.5088 5.9255 42 1 8.9483 7.2241 1.5286 43 1 8.2942 3.7196 3.7029 44 1 7.8407 4.6205 2.2347 45 1 5.6657 -1.2563 0.0020 46 1 5.1632 -3.6465 0.0033 47 1 2.8345 -4.4331 0.0039 48 1 0.9829 -2.8434 0.0027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595586240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:15 Heat of formation + Delta-G solvation = 66.609394 kcal Electronic energy + Delta-G solvation = -29529.897948 eV Core-core repulsion = 25586.281187 eV Total energy + Delta-G solvation = -3943.616761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.58456 -39.63722 -37.52748 -36.89627 -35.06514 -33.54012 -32.88699 -31.66617 -30.69604 -30.11894 -29.74467 -28.16190 -25.53656 -24.99101 -23.90559 -23.15544 -22.12076 -21.77132 -20.15460 -20.06473 -18.77373 -17.67783 -17.29994 -16.94076 -16.16006 -16.00037 -15.50618 -15.49001 -14.99052 -14.60637 -14.34759 -14.30510 -13.92506 -13.70766 -13.59386 -13.42373 -13.24938 -12.93900 -12.80562 -12.56349 -12.41386 -12.17205 -11.99078 -11.93405 -11.84396 -11.32442 -10.94498 -10.92008 -10.85774 -10.48151 -10.38152 -10.26054 -10.18047 -9.83439 -9.42924 -9.05573 -8.96176 -8.91237 -8.73809 -8.37020 -8.14422 -7.59574 -5.93629 -4.02649 0.65566 1.23080 2.03166 2.08547 3.32087 3.37475 3.41849 3.43134 3.57692 3.88964 4.06700 4.19862 4.36755 4.43804 4.51742 4.69276 4.76431 4.86379 4.96665 5.08406 5.12288 5.27606 5.33014 5.36265 5.45448 5.54774 5.56435 5.64356 5.73091 5.82590 6.02384 6.06828 6.20591 6.21130 6.26576 6.35841 6.53740 6.62988 6.70834 6.74735 6.76672 6.85278 7.03206 7.10937 7.37080 7.39237 7.54069 7.79252 7.98158 8.11320 8.45880 8.61738 9.00597 9.28093 9.62596 11.11483 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.002360 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.505338 B =11863.891638 C =12065.564019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.409 5.409 3 N -0.230 5.230 4 C 0.087 3.913 5 C 0.223 3.777 6 N -0.752 5.752 7 C 0.705 3.295 8 O -0.582 6.582 9 N -0.621 5.621 10 C 0.116 3.884 11 C -0.134 4.134 12 C -0.109 4.109 13 C 0.039 3.961 14 H 0.028 0.972 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.879 5.879 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.130 3.870 24 C -0.168 4.168 25 C -0.034 4.034 26 C -0.161 4.161 27 C -0.069 4.069 28 C -0.144 4.144 29 C 0.126 3.874 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.392 0.608 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.264 0.736 43 H 0.039 0.961 44 H 0.123 0.877 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.459 -21.411 -3.289 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.197 5.197 3 N -0.043 5.043 4 C -0.091 4.091 5 C 0.097 3.903 6 N -0.413 5.413 7 C 0.406 3.594 8 O -0.459 6.459 9 N -0.357 5.357 10 C -0.008 4.008 11 C -0.172 4.172 12 C -0.147 4.147 13 C 0.020 3.980 14 H 0.046 0.954 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.516 5.516 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C 0.009 3.991 24 C -0.176 4.176 25 C -0.054 4.054 26 C -0.181 4.181 27 C -0.090 4.090 28 C -0.166 4.166 29 C 0.011 3.989 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.228 0.772 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.141 0.859 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.920 -20.007 -4.180 25.907 hybrid contribution 0.659 -0.280 0.639 0.959 sum -15.261 -20.286 -3.542 25.632 Atomic orbital electron populations 1.21758 0.73957 1.04307 1.03057 1.48191 1.05865 1.01050 1.64562 1.76667 1.02141 1.08307 1.17212 1.23560 0.92863 0.92059 1.00641 1.19254 0.90520 0.96181 0.84376 1.45228 1.35760 1.53076 1.07225 1.15842 0.80482 0.79139 0.83926 1.90927 1.52251 1.59573 1.43145 1.47769 1.39516 1.45704 1.02730 1.21397 0.94937 0.95501 0.88964 1.21877 0.99332 0.97491 0.98532 1.21610 0.95827 0.97263 1.00003 1.18985 0.95722 0.92466 0.90815 0.95354 1.21029 1.17631 1.24536 0.92834 0.92463 1.25054 0.97292 0.96650 0.95014 1.69880 1.40377 1.41944 0.99421 0.86663 0.82268 0.81256 0.77829 1.20267 1.21277 1.20354 1.22188 0.86137 0.86503 1.04228 1.19772 0.93162 0.92559 1.12069 1.20461 0.98182 0.91978 0.94790 1.20690 0.96729 0.95432 1.05220 1.20730 0.92268 0.99300 0.96699 1.19783 0.99971 0.88755 1.08044 1.18848 0.90587 0.89619 0.99829 0.91186 0.89800 0.89255 0.89346 0.89762 0.77165 0.92317 0.92117 0.92393 0.92204 0.93191 0.93102 0.92592 0.94254 0.85913 0.85131 0.85496 0.85403 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.74 11.40 59.84 0.68 1.42 16 2 N -0.41 -4.55 4.05 -65.47 -0.27 -4.82 16 3 N -0.23 -3.13 12.40 34.84 0.43 -2.70 16 4 C 0.09 1.15 6.80 -80.19 -0.55 0.60 16 5 C 0.22 3.21 6.27 -5.20 -0.03 3.18 16 6 N -0.75 -11.99 5.46 -66.42 -0.36 -12.35 16 7 C 0.70 14.66 8.30 -86.92 -0.72 13.94 16 8 O -0.58 -14.60 15.78 5.29 0.08 -14.52 16 9 N -0.62 -12.79 2.98 -178.76 -0.53 -13.32 16 10 C 0.12 1.87 6.40 -3.93 -0.03 1.84 16 11 C -0.13 -2.22 6.07 -26.83 -0.16 -2.38 16 12 C -0.11 -2.21 5.11 -26.69 -0.14 -2.34 16 13 C 0.04 0.99 2.25 -91.66 -0.21 0.78 16 14 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 15 C -0.52 -14.27 8.57 -34.44 -0.30 -14.57 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -25.96 11.39 55.43 0.63 -25.33 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.13 3.21 5.39 -3.71 -0.02 3.19 16 24 C -0.17 -2.00 6.33 -105.21 -0.67 -2.67 16 25 C -0.03 -0.34 10.07 -39.58 -0.40 -0.74 16 26 C -0.16 -1.33 9.97 -39.95 -0.40 -1.73 16 27 C -0.07 -0.52 9.96 -39.91 -0.40 -0.91 16 28 C -0.14 -1.20 9.97 -39.79 -0.40 -1.59 16 29 C 0.13 1.38 6.87 -84.17 -0.58 0.80 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.39 5.51 5.92 -40.82 -0.24 5.27 16 36 H 0.06 0.79 5.57 -51.93 -0.29 0.50 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.12 3.55 5.15 -51.93 -0.27 3.28 16 45 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 46 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -34.24 390.56 -10.64 -44.89 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.10 Total: 5.33 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -4.39 Total: 0.49 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.10 Total: -58.52 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.08 Total: -14.52 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.24 -10.64 -44.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595586240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.496 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds