Wall clock time and date at job start Wed Apr 1 2020 03:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.39875 * 125.46507 * 2 1 4 4 C 1.30239 * 110.08787 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.10554 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47327 * 90.02191 * 5 4 3 7 7 C 1.34770 * 119.99993 * 179.97438 * 6 5 4 8 8 O 1.21586 * 120.00252 * 354.91940 * 7 6 5 9 9 N 1.34782 * 120.00112 * 174.92157 * 7 6 5 10 10 C 1.46928 * 120.62725 * 4.74843 * 9 7 6 11 11 C 1.52764 * 109.00602 * 233.58140 * 10 9 7 12 12 C 1.53043 * 109.38241 * 305.59148 * 11 10 9 13 13 C 1.53035 * 109.54294 * 61.23527 * 12 11 10 14 14 H 1.09005 * 109.49333 * 58.58792 * 13 12 11 15 15 C 1.50695 * 109.52483 * 178.66731 * 13 12 11 16 16 H 1.08000 * 120.00317 * 359.85609 * 15 13 12 17 17 C 1.37877 * 119.99942 * 179.85612 * 15 13 12 18 18 N 1.31514 * 120.00232 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 120.00005 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46817 * 60.00276 * 19 17 15 21 21 H 1.48503 * 109.46956 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47081 * 299.99999 * 19 17 15 23 23 C 1.46921 * 120.63278 * 185.02203 * 9 7 6 24 24 C 1.45928 * 107.78295 * 359.97438 * 4 3 2 25 25 C 1.39947 * 134.02407 * 179.97438 * 24 4 3 26 26 C 1.36465 * 119.63487 * 180.02562 * 25 24 4 27 27 C 1.38963 * 120.62695 * 359.97438 * 26 25 24 28 28 C 1.36594 * 120.81819 * 0.02562 * 27 26 25 29 29 C 1.37044 * 125.46103 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.47454 * 90.02543 * 1 2 3 31 31 H 1.09002 * 109.47507 * 210.02641 * 1 2 3 32 32 H 1.08996 * 109.47257 * 330.02529 * 1 2 3 33 33 H 1.09004 * 109.47208 * 210.02045 * 5 4 3 34 34 H 1.08999 * 109.47167 * 330.02147 * 5 4 3 35 35 H 0.96996 * 119.99999 * 0.02562 * 6 5 4 36 36 H 1.08999 * 109.58625 * 353.41043 * 10 9 7 37 37 H 1.08998 * 109.59125 * 113.84401 * 10 9 7 38 38 H 1.08998 * 109.56513 * 185.55023 * 11 10 9 39 39 H 1.09003 * 109.35883 * 65.49743 * 11 10 9 40 40 H 1.09002 * 109.45689 * 301.21197 * 12 11 10 41 41 H 1.08996 * 109.45691 * 181.26243 * 12 11 10 42 42 H 0.96995 * 120.00354 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.58995 * 246.15803 * 23 9 7 44 44 H 1.08999 * 109.58609 * 6.44227 * 23 9 7 45 45 H 1.08000 * 120.18326 * 0.02562 * 25 24 4 46 46 H 1.08002 * 119.68646 * 180.02562 * 26 25 24 47 47 H 1.07998 * 119.59306 * 180.02562 * 27 26 25 48 48 H 1.07994 * 120.07355 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2765 1.1392 0.0000 4 6 3.5323 0.7939 0.0005 5 6 4.7113 1.7324 0.0013 6 7 5.0931 2.0358 1.3827 7 6 6.1301 2.8605 1.6296 8 8 6.8063 3.2791 0.7098 9 7 6.4177 3.2211 2.8960 10 6 5.6768 2.6431 4.0255 11 6 5.1175 3.7753 4.8851 12 6 6.2560 4.7129 5.2935 13 6 6.8909 5.3229 4.0418 14 1 6.1326 5.8647 3.4765 15 6 7.9904 6.2710 4.4457 16 1 8.2131 6.4257 5.4911 17 6 8.7120 6.9410 3.4806 18 7 8.4405 6.7531 2.2076 19 14 10.0754 8.1158 3.9812 20 1 11.1072 7.3768 4.7522 21 1 10.6932 8.7039 2.7656 22 1 9.5100 9.2001 4.8237 23 6 7.4740 4.2040 3.1729 24 6 3.5935 -0.6641 0.0016 25 6 4.6397 -1.5936 0.0020 26 6 4.3564 -2.9285 0.0025 27 6 3.0397 -3.3727 0.0031 28 6 2.0016 -2.4849 0.0026 29 6 2.2600 -1.1162 0.0005 30 1 -0.3634 -0.0005 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 5.5500 1.2625 -0.5126 34 1 4.4415 2.6552 -0.5122 35 1 4.6000 1.6427 2.1197 36 1 4.8562 2.0320 3.6497 37 1 6.3473 2.0289 4.6264 38 1 4.6506 3.3594 5.7779 39 1 4.3759 4.3318 4.3119 40 1 7.0092 4.1506 5.8455 41 1 5.8620 5.5088 5.9255 42 1 8.9483 7.2241 1.5286 43 1 8.2942 3.7196 3.7029 44 1 7.8407 4.6205 2.2347 45 1 5.6657 -1.2563 0.0020 46 1 5.1632 -3.6465 0.0033 47 1 2.8345 -4.4331 0.0039 48 1 0.9829 -2.8434 0.0027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595586240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:14 Heat of formation + Delta-G solvation = 45.022173 kcal Electronic energy + Delta-G solvation = -29530.834040 eV Core-core repulsion = 25586.281187 eV Total energy + Delta-G solvation = -3944.552853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.38853 -41.25645 -38.59673 -38.18345 -36.35047 -35.29888 -34.18577 -33.32101 -31.54317 -31.33287 -30.84824 -29.28749 -27.02381 -26.46209 -25.39210 -23.89539 -23.44682 -22.84564 -21.75909 -21.11419 -20.31206 -19.15642 -18.27425 -18.04615 -17.73679 -17.31641 -16.63483 -16.47336 -16.40991 -16.12962 -15.56527 -15.22859 -15.19657 -15.05949 -14.93847 -14.65427 -14.37248 -14.25697 -13.96006 -13.83661 -13.67311 -13.53751 -13.34804 -12.83282 -12.76623 -12.72985 -12.64756 -12.26985 -12.23044 -11.99823 -11.87406 -11.78829 -11.63050 -11.28947 -11.01918 -10.93594 -10.82402 -10.49185 -10.24679 -9.69187 -9.27774 -8.86781 -8.07653 -6.25124 -0.09627 0.53311 1.10732 1.34905 1.42627 1.44530 1.52747 1.93678 2.24198 2.44156 2.83665 3.05122 3.19624 3.21901 3.41344 3.66475 4.01065 4.08747 4.14381 4.16880 4.26524 4.31857 4.40253 4.45901 4.47387 4.56662 4.60324 4.60796 4.66811 4.72918 4.80552 4.85411 4.94137 5.06635 5.10235 5.26194 5.26847 5.30034 5.32862 5.40044 5.51587 5.58168 5.62244 5.63982 5.87530 5.89141 5.97721 6.08778 6.14517 6.37505 6.51269 6.87553 7.07315 7.44639 7.63541 8.95591 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.002360 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.505338 B =11863.891638 C =12065.564019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.408 5.408 3 N -0.259 5.259 4 C 0.074 3.926 5 C 0.228 3.772 6 N -0.729 5.729 7 C 0.700 3.300 8 O -0.634 6.634 9 N -0.625 5.625 10 C 0.112 3.888 11 C -0.126 4.126 12 C -0.104 4.104 13 C 0.038 3.962 14 H -0.016 1.016 15 C -0.536 4.536 16 H 0.063 0.937 17 C 0.009 3.991 18 N -0.915 5.915 19 Si 0.958 3.042 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.269 1.269 23 C 0.145 3.855 24 C -0.189 4.189 25 C -0.056 4.056 26 C -0.155 4.155 27 C -0.064 4.064 28 C -0.142 4.142 29 C 0.110 3.890 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.405 0.595 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.259 0.741 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.129 0.871 46 H 0.150 0.850 47 H 0.164 0.836 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.156 -24.683 -1.472 30.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.197 5.197 3 N -0.074 5.074 4 C -0.103 4.103 5 C 0.102 3.898 6 N -0.389 5.389 7 C 0.401 3.599 8 O -0.515 6.515 9 N -0.361 5.361 10 C -0.011 4.011 11 C -0.164 4.164 12 C -0.141 4.141 13 C 0.018 3.982 14 H 0.002 0.998 15 C -0.575 4.575 16 H 0.081 0.919 17 C -0.191 4.191 18 N -0.554 5.554 19 Si 0.783 3.217 20 H -0.191 1.191 21 H -0.216 1.216 22 H -0.194 1.194 23 C 0.022 3.978 24 C -0.197 4.197 25 C -0.076 4.076 26 C -0.175 4.175 27 C -0.085 4.085 28 C -0.164 4.164 29 C -0.004 4.004 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.243 0.757 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.147 0.853 46 H 0.168 0.832 47 H 0.181 0.819 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.677 -23.321 -2.318 29.355 hybrid contribution 1.085 0.621 0.047 1.251 sum -16.591 -22.700 -2.271 28.209 Atomic orbital electron populations 1.22116 0.71730 1.05780 1.04309 1.48493 1.07009 1.00408 1.63787 1.76545 1.02654 1.10282 1.17929 1.23195 0.92242 0.92638 1.02194 1.19157 0.91581 0.95914 0.83139 1.44967 1.34013 1.51474 1.08474 1.16026 0.80996 0.79409 0.83433 1.90887 1.54223 1.61573 1.44781 1.47665 1.39233 1.45101 1.04104 1.21735 0.95908 0.95752 0.87673 1.21834 0.97649 0.96708 1.00215 1.21496 0.97152 0.98066 0.97421 1.18920 0.94324 0.92241 0.92665 0.99772 1.21478 1.18029 1.24874 0.93070 0.91863 1.25917 0.99806 0.98468 0.94869 1.70091 1.41626 1.43068 1.00566 0.85609 0.79408 0.79225 0.77414 1.19085 1.21551 1.19359 1.21603 0.87212 0.87301 1.01692 1.19926 0.94525 0.91874 1.13368 1.20603 0.97869 0.92831 0.96288 1.21054 0.98165 0.94897 1.03339 1.21185 0.91477 1.00996 0.94807 1.20194 1.01858 0.87446 1.06874 1.19224 0.90094 0.90651 1.00447 0.90028 0.86915 0.89220 0.89136 0.91582 0.75720 0.89146 0.89918 0.87811 0.93497 0.92175 0.92956 0.93146 0.94567 0.90549 0.85343 0.83242 0.81889 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.14 11.40 127.77 1.46 2.60 16 2 N -0.41 -8.60 4.05 -361.06 -1.46 -10.06 16 3 N -0.26 -7.12 12.40 -43.70 -0.54 -7.67 16 4 C 0.07 2.00 6.80 44.79 0.30 2.31 16 5 C 0.23 6.95 6.27 85.63 0.54 7.49 16 6 N -0.73 -23.78 5.46 -482.31 -2.63 -26.42 16 7 C 0.70 30.35 8.30 179.05 1.49 31.83 16 8 O -0.63 -33.97 15.78 -3.99 -0.06 -34.03 16 9 N -0.63 -26.26 2.98 -837.74 -2.50 -28.76 16 10 C 0.11 3.36 6.40 86.22 0.55 3.91 16 11 C -0.13 -3.88 6.07 30.53 0.19 -3.69 16 12 C -0.10 -4.09 5.11 30.62 0.16 -3.93 16 13 C 0.04 1.96 2.25 -11.47 -0.03 1.93 16 14 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 15 C -0.54 -30.02 8.57 25.60 0.22 -29.80 16 16 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 17 C 0.01 0.51 5.30 84.65 0.45 0.96 16 18 N -0.91 -56.92 11.39 21.45 0.24 -56.68 16 19 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 C 0.14 7.45 5.39 86.36 0.47 7.92 16 24 C -0.19 -4.42 6.33 -20.24 -0.13 -4.54 16 25 C -0.06 -1.07 10.07 22.27 0.22 -0.85 16 26 C -0.16 -2.13 9.97 22.03 0.22 -1.91 16 27 C -0.06 -0.70 9.96 22.06 0.22 -0.48 16 28 C -0.14 -1.87 9.97 22.14 0.22 -1.65 16 29 C 0.11 2.22 6.87 39.21 0.27 2.49 16 30 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.40 11.09 5.92 -92.71 -0.55 10.54 16 36 H 0.09 2.16 5.57 -2.39 -0.01 2.15 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.08 4.71 5.15 -2.39 -0.01 4.70 16 45 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 46 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 47 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 48 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -80.70 390.56 2.31 -78.39 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.43 Total: 23.63 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 6.81 Total: 14.58 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -6.89 Total: -129.58 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.06 Total: -34.03 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -80.70 2.31 -78.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595586240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.408 kcal (2) G-P(sol) polarization free energy of solvation -80.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds