Wall clock time and date at job start Wed Apr 1 2020 03:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39875 * 125.45962 * 2 1 4 4 C 1.30243 * 110.08307 * 180.02562 * 3 2 1 5 5 C 1.45925 * 107.78744 * 0.02562 * 4 3 2 6 6 C 1.39941 * 134.03198 * 180.02562 * 5 4 3 7 7 C 1.36464 * 119.63769 * 179.78843 * 6 5 4 8 8 C 1.38962 * 120.62799 * 0.48446 * 7 6 5 9 9 C 1.50698 * 119.59307 * 179.75316 * 8 7 6 10 10 N 1.46507 * 109.46952 * 269.72356 * 9 8 7 11 11 C 1.34778 * 119.99867 * 180.27204 * 10 9 8 12 12 O 1.21587 * 119.99971 * 354.71153 * 11 10 9 13 13 N 1.34769 * 119.99641 * 174.70687 * 11 10 9 14 14 C 1.46932 * 120.63196 * 4.75828 * 13 11 10 15 15 C 1.52768 * 109.00473 * 233.58119 * 14 13 11 16 16 C 1.53035 * 109.38171 * 305.58540 * 15 14 13 17 17 C 1.53041 * 109.54169 * 61.24372 * 16 15 14 18 18 H 1.09007 * 109.49233 * 58.58102 * 17 16 15 19 19 C 1.50699 * 109.50035 * 178.67953 * 17 16 15 20 20 H 1.08000 * 120.00022 * 5.24458 * 19 17 16 21 21 C 1.37876 * 119.99775 * 185.24394 * 19 17 16 22 22 N 1.31512 * 120.00033 * 355.12634 * 21 19 17 23 23 Si 1.86804 * 119.99725 * 175.12563 * 21 19 17 24 24 H 1.48500 * 109.47052 * 94.99917 * 23 21 19 25 25 H 1.48493 * 109.47123 * 214.99761 * 23 21 19 26 26 H 1.48498 * 109.46995 * 334.99963 * 23 21 19 27 27 C 1.46928 * 120.63266 * 185.03334 * 13 11 10 28 28 C 1.36593 * 120.81461 * 359.47058 * 8 7 6 29 29 C 1.37033 * 125.46219 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.47062 * 269.99671 * 1 2 3 31 31 H 1.08994 * 109.47406 * 29.99964 * 1 2 3 32 32 H 1.09004 * 109.47180 * 150.00387 * 1 2 3 33 33 H 1.08001 * 126.10425 * 179.97438 * 4 3 2 34 34 H 1.08007 * 120.17772 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.68744 * 180.23474 * 7 6 5 36 36 H 1.08999 * 109.47431 * 149.73096 * 9 8 7 37 37 H 1.08998 * 109.47206 * 29.72682 * 9 8 7 38 38 H 0.96997 * 119.99402 * 0.02562 * 10 9 8 39 39 H 1.08996 * 109.58716 * 353.41079 * 14 13 11 40 40 H 1.08995 * 109.58875 * 113.84345 * 14 13 11 41 41 H 1.09003 * 109.55999 * 185.55113 * 15 14 13 42 42 H 1.08991 * 109.38577 * 65.51820 * 15 14 13 43 43 H 1.09004 * 109.46610 * 301.21987 * 16 15 14 44 44 H 1.09006 * 109.44588 * 181.25340 * 16 15 14 45 45 H 0.97000 * 119.99341 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.59016 * 246.16136 * 27 13 11 47 47 H 1.08997 * 109.58373 * 6.58083 * 27 13 11 48 48 H 1.07995 * 120.07627 * 180.29626 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1393 0.0000 4 6 3.5323 0.7940 -0.0005 5 6 3.5937 -0.6640 -0.0016 6 6 4.6398 -1.5935 -0.0020 7 6 4.3565 -2.9284 0.0014 8 6 3.0398 -3.3727 -0.0049 9 6 2.7536 -4.8522 -0.0066 10 7 2.6608 -5.3300 -1.3885 11 6 2.4037 -6.6296 -1.6363 12 8 2.3442 -7.4235 -0.7173 13 7 2.2124 -7.0490 -2.9027 14 6 2.3833 -6.1241 -4.0315 15 6 1.1187 -6.1459 -4.8883 16 6 0.8075 -7.5872 -5.2978 17 6 0.5596 -8.4327 -4.0465 18 1 -0.2686 -8.0083 -3.4789 19 6 0.2214 -9.8442 -4.4519 20 1 0.2691 -10.1336 -5.4913 21 6 -0.1489 -10.7661 -3.4959 22 7 -0.1148 -10.4419 -2.2218 23 14 -0.6992 -12.4754 -4.0104 24 1 0.4563 -13.4063 -3.9511 25 1 -1.7648 -12.9500 -3.0915 26 1 -1.2266 -12.4289 -5.3978 27 6 1.8233 -8.4383 -3.1805 28 6 2.0017 -2.4849 -0.0037 29 6 2.2600 -1.1161 -0.0005 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 4.3773 1.4666 -0.0011 34 1 5.6658 -1.2561 -0.0020 35 1 5.1632 -3.6464 0.0049 36 1 1.8108 -5.0406 0.5070 37 1 3.5584 -5.3786 0.5066 38 1 2.7808 -4.7103 -2.1249 39 1 2.5505 -5.1150 -3.6550 40 1 3.2354 -6.4373 -4.6347 41 1 1.2721 -5.5392 -5.7808 42 1 0.2852 -5.7429 -4.3133 43 1 1.6515 -7.9977 -5.8521 44 1 -0.0821 -7.6015 -5.9277 45 1 -0.3750 -11.0907 -1.5493 46 1 2.6288 -8.9441 -3.7128 47 1 1.6212 -8.9556 -2.2426 48 1 0.9830 -2.8433 -0.0037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595631952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:23 Heat of formation + Delta-G solvation = 64.025655 kcal Electronic energy + Delta-G solvation = -29334.916163 eV Core-core repulsion = 25391.187362 eV Total energy + Delta-G solvation = -3943.728800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.55626 -39.74194 -38.03257 -36.75563 -34.43717 -33.71587 -33.22286 -31.77193 -30.77120 -30.41425 -29.66261 -26.85894 -26.28475 -25.02805 -24.01884 -22.89367 -21.82915 -21.56077 -20.87837 -20.08299 -18.83785 -17.70356 -17.29923 -16.89637 -16.19902 -15.89270 -15.73897 -15.44799 -14.82632 -14.67710 -14.48888 -14.23555 -13.92088 -13.73338 -13.60445 -13.46561 -13.28143 -12.96846 -12.85836 -12.58935 -12.51913 -12.09578 -11.91826 -11.90190 -11.76599 -11.30216 -11.08133 -11.00876 -10.86916 -10.51089 -10.38609 -10.34087 -10.23927 -9.84853 -9.49601 -9.06939 -8.95479 -8.82458 -8.74029 -8.44162 -8.16285 -7.62202 -5.97873 -4.05930 0.59922 1.22911 2.07814 2.17425 3.19365 3.32485 3.39765 3.42391 3.63350 3.87221 4.13451 4.20613 4.41823 4.45586 4.49889 4.55140 4.86576 4.91100 5.00314 5.02077 5.14287 5.29682 5.30321 5.32719 5.41431 5.50386 5.54507 5.63179 5.74338 5.82107 5.99530 6.06998 6.17033 6.17588 6.32749 6.38471 6.52823 6.60366 6.66906 6.72381 6.79802 6.82234 6.99675 7.07815 7.30534 7.35552 7.52657 7.75281 7.93850 8.06528 8.42497 8.60087 8.98345 9.26536 9.59605 11.07917 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.002260 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.051161 B =12384.797963 C =12604.765389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.409 5.409 3 N -0.254 5.254 4 C 0.071 3.929 5 C -0.180 4.180 6 C -0.042 4.042 7 C -0.141 4.141 8 C -0.049 4.049 9 C 0.179 3.821 10 N -0.753 5.753 11 C 0.701 3.299 12 O -0.584 6.584 13 N -0.622 5.622 14 C 0.116 3.884 15 C -0.134 4.134 16 C -0.110 4.110 17 C 0.040 3.960 18 H 0.030 0.970 19 C -0.521 4.521 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.878 5.878 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.131 3.869 28 C -0.120 4.120 29 C 0.126 3.874 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.196 0.804 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.392 0.608 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.263 0.737 46 H 0.039 0.961 47 H 0.118 0.882 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.513 22.509 3.297 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.198 5.198 3 N -0.066 5.066 4 C -0.127 4.127 5 C -0.188 4.188 6 C -0.062 4.062 7 C -0.160 4.160 8 C -0.052 4.052 9 C 0.055 3.945 10 N -0.413 5.413 11 C 0.403 3.597 12 O -0.461 6.461 13 N -0.358 5.358 14 C -0.008 4.008 15 C -0.172 4.172 16 C -0.148 4.148 17 C 0.020 3.980 18 H 0.048 0.952 19 C -0.560 4.560 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.515 5.515 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C 0.010 3.990 28 C -0.143 4.143 29 C 0.012 3.988 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.213 0.787 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.228 0.772 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.136 0.864 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.368 22.805 4.175 24.043 hybrid contribution 0.153 -1.139 -0.615 1.303 sum 6.520 21.667 3.559 22.905 Atomic orbital electron populations 1.21786 0.73954 1.04412 1.03138 1.48177 1.05923 1.01026 1.64678 1.76580 1.02763 1.09086 1.18215 1.25075 0.94664 0.93125 0.99787 1.19955 0.93094 0.93367 1.12391 1.20323 0.97771 0.91780 0.96362 1.20653 0.96078 0.95532 1.03787 1.19540 0.92908 0.94996 0.97785 1.19970 1.02714 0.88017 0.83819 1.45329 1.79628 1.08870 1.07508 1.15927 0.78203 0.81723 0.83849 1.90923 1.58669 1.53251 1.43268 1.47788 1.71564 1.13655 1.02831 1.21398 0.98199 0.92239 0.88964 1.21874 0.97423 0.99347 0.98558 1.21620 1.00148 0.92968 1.00019 1.19001 0.93509 0.94655 0.90802 0.95179 1.21065 1.46534 0.94806 0.93597 0.92402 1.25057 0.95296 0.98669 0.94974 1.69925 1.46886 1.35097 0.99642 0.86599 0.78495 0.84615 0.78411 1.20723 1.21197 1.19916 1.22196 0.96256 0.76684 1.03845 1.19759 1.00022 0.88481 1.06029 1.18770 0.90765 0.89421 0.99879 0.91151 0.89434 0.89541 0.78685 0.85233 0.85168 0.90920 0.90539 0.77210 0.92199 0.92146 0.92371 0.92271 0.93225 0.93051 0.92704 0.94225 0.86391 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.76 11.40 59.85 0.68 1.45 16 2 N -0.41 -4.29 4.05 -65.47 -0.27 -4.55 16 3 N -0.25 -2.75 12.40 31.87 0.40 -2.35 16 4 C 0.07 0.62 12.28 -15.15 -0.19 0.44 16 5 C -0.18 -1.79 6.37 -105.21 -0.67 -2.46 16 6 C -0.04 -0.35 10.07 -39.58 -0.40 -0.75 16 7 C -0.14 -1.30 9.60 -39.95 -0.38 -1.68 16 8 C -0.05 -0.52 5.22 -104.95 -0.55 -1.06 16 9 C 0.18 2.30 5.78 -5.19 -0.03 2.27 16 10 N -0.75 -11.15 5.46 -66.41 -0.36 -11.51 16 11 C 0.70 14.19 8.30 -86.92 -0.72 13.47 16 12 O -0.58 -14.50 15.79 5.29 0.08 -14.42 16 13 N -0.62 -12.47 2.98 -178.76 -0.53 -13.00 16 14 C 0.12 1.79 6.40 -3.93 -0.03 1.76 16 15 C -0.13 -2.13 6.06 -26.83 -0.16 -2.29 16 16 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 17 C 0.04 0.98 2.19 -91.65 -0.20 0.77 16 18 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 19 C -0.52 -14.10 8.49 -34.44 -0.29 -14.39 16 20 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 21 C 0.06 1.75 5.36 -17.82 -0.10 1.66 16 22 N -0.88 -25.71 11.61 55.43 0.64 -25.07 16 23 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.13 3.18 5.46 -3.71 -0.02 3.16 16 28 C -0.12 -1.26 9.58 -39.79 -0.38 -1.64 16 29 C 0.13 1.37 6.87 -84.17 -0.58 0.79 16 30 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 35 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 36 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 37 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.39 4.92 5.92 -40.82 -0.24 4.68 16 39 H 0.06 0.74 5.57 -51.93 -0.29 0.45 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.12 3.37 5.38 -51.93 -0.28 3.10 16 48 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -34.43 390.40 -10.43 -44.87 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.11 Total: 4.71 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -4.15 Total: -0.81 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.12 Total: -56.48 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.42 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.43 -10.43 -44.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595631952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.891 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds