Wall clock time and date at job start Wed Apr 1 2020 03:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39875 * 125.45962 * 2 1 4 4 C 1.30243 * 110.08307 * 180.02562 * 3 2 1 5 5 C 1.45925 * 107.78744 * 0.02562 * 4 3 2 6 6 C 1.39941 * 134.03198 * 180.02562 * 5 4 3 7 7 C 1.36464 * 119.63769 * 179.78843 * 6 5 4 8 8 C 1.38962 * 120.62799 * 0.48446 * 7 6 5 9 9 C 1.50698 * 119.59307 * 179.75316 * 8 7 6 10 10 N 1.46507 * 109.46952 * 269.72356 * 9 8 7 11 11 C 1.34778 * 119.99867 * 180.27204 * 10 9 8 12 12 O 1.21587 * 119.99971 * 354.71153 * 11 10 9 13 13 N 1.34769 * 119.99641 * 174.70687 * 11 10 9 14 14 C 1.46932 * 120.63196 * 4.75828 * 13 11 10 15 15 C 1.52768 * 109.00473 * 233.58119 * 14 13 11 16 16 C 1.53035 * 109.38171 * 305.58540 * 15 14 13 17 17 C 1.53041 * 109.54169 * 61.24372 * 16 15 14 18 18 H 1.09007 * 109.49233 * 58.58102 * 17 16 15 19 19 C 1.50699 * 109.50035 * 178.67953 * 17 16 15 20 20 H 1.08000 * 120.00022 * 5.24458 * 19 17 16 21 21 C 1.37876 * 119.99775 * 185.24394 * 19 17 16 22 22 N 1.31512 * 120.00033 * 355.12634 * 21 19 17 23 23 Si 1.86804 * 119.99725 * 175.12563 * 21 19 17 24 24 H 1.48500 * 109.47052 * 94.99917 * 23 21 19 25 25 H 1.48493 * 109.47123 * 214.99761 * 23 21 19 26 26 H 1.48498 * 109.46995 * 334.99963 * 23 21 19 27 27 C 1.46928 * 120.63266 * 185.03334 * 13 11 10 28 28 C 1.36593 * 120.81461 * 359.47058 * 8 7 6 29 29 C 1.37033 * 125.46219 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.47062 * 269.99671 * 1 2 3 31 31 H 1.08994 * 109.47406 * 29.99964 * 1 2 3 32 32 H 1.09004 * 109.47180 * 150.00387 * 1 2 3 33 33 H 1.08001 * 126.10425 * 179.97438 * 4 3 2 34 34 H 1.08007 * 120.17772 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.68744 * 180.23474 * 7 6 5 36 36 H 1.08999 * 109.47431 * 149.73096 * 9 8 7 37 37 H 1.08998 * 109.47206 * 29.72682 * 9 8 7 38 38 H 0.96997 * 119.99402 * 0.02562 * 10 9 8 39 39 H 1.08996 * 109.58716 * 353.41079 * 14 13 11 40 40 H 1.08995 * 109.58875 * 113.84345 * 14 13 11 41 41 H 1.09003 * 109.55999 * 185.55113 * 15 14 13 42 42 H 1.08991 * 109.38577 * 65.51820 * 15 14 13 43 43 H 1.09004 * 109.46610 * 301.21987 * 16 15 14 44 44 H 1.09006 * 109.44588 * 181.25340 * 16 15 14 45 45 H 0.97000 * 119.99341 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.59016 * 246.16136 * 27 13 11 47 47 H 1.08997 * 109.58373 * 6.58083 * 27 13 11 48 48 H 1.07995 * 120.07627 * 180.29626 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1393 0.0000 4 6 3.5323 0.7940 -0.0005 5 6 3.5937 -0.6640 -0.0016 6 6 4.6398 -1.5935 -0.0020 7 6 4.3565 -2.9284 0.0014 8 6 3.0398 -3.3727 -0.0049 9 6 2.7536 -4.8522 -0.0066 10 7 2.6608 -5.3300 -1.3885 11 6 2.4037 -6.6296 -1.6363 12 8 2.3442 -7.4235 -0.7173 13 7 2.2124 -7.0490 -2.9027 14 6 2.3833 -6.1241 -4.0315 15 6 1.1187 -6.1459 -4.8883 16 6 0.8075 -7.5872 -5.2978 17 6 0.5596 -8.4327 -4.0465 18 1 -0.2686 -8.0083 -3.4789 19 6 0.2214 -9.8442 -4.4519 20 1 0.2691 -10.1336 -5.4913 21 6 -0.1489 -10.7661 -3.4959 22 7 -0.1148 -10.4419 -2.2218 23 14 -0.6992 -12.4754 -4.0104 24 1 0.4563 -13.4063 -3.9511 25 1 -1.7648 -12.9500 -3.0915 26 1 -1.2266 -12.4289 -5.3978 27 6 1.8233 -8.4383 -3.1805 28 6 2.0017 -2.4849 -0.0037 29 6 2.2600 -1.1161 -0.0005 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 4.3773 1.4666 -0.0011 34 1 5.6658 -1.2561 -0.0020 35 1 5.1632 -3.6464 0.0049 36 1 1.8108 -5.0406 0.5070 37 1 3.5584 -5.3786 0.5066 38 1 2.7808 -4.7103 -2.1249 39 1 2.5505 -5.1150 -3.6550 40 1 3.2354 -6.4373 -4.6347 41 1 1.2721 -5.5392 -5.7808 42 1 0.2852 -5.7429 -4.3133 43 1 1.6515 -7.9977 -5.8521 44 1 -0.0821 -7.6015 -5.9277 45 1 -0.3750 -11.0907 -1.5493 46 1 2.6288 -8.9441 -3.7128 47 1 1.6212 -8.9556 -2.2426 48 1 0.9830 -2.8433 -0.0037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595631952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:21 Heat of formation + Delta-G solvation = 42.469381 kcal Electronic energy + Delta-G solvation = -29335.850913 eV Core-core repulsion = 25391.187362 eV Total energy + Delta-G solvation = -3944.663550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.26934 -41.26960 -39.00441 -38.25273 -35.75845 -35.12162 -34.39039 -33.41808 -31.80194 -31.37732 -31.09534 -27.61124 -27.38946 -26.85126 -25.52161 -23.64177 -23.42028 -22.38236 -21.72712 -21.57600 -20.37871 -19.17394 -18.27923 -18.00349 -17.64973 -17.24508 -16.60571 -16.57412 -16.45502 -15.97973 -15.35767 -15.34055 -15.20315 -15.17852 -14.80291 -14.57861 -14.36100 -14.20193 -13.97630 -13.90285 -13.58811 -13.51599 -13.33953 -12.90438 -12.82287 -12.68707 -12.56359 -12.31397 -12.20635 -12.02745 -11.82887 -11.78646 -11.61583 -11.21956 -11.02919 -10.92102 -10.83559 -10.52804 -10.16516 -9.66423 -9.24439 -8.85766 -8.09573 -6.25580 -0.15024 0.50412 1.41375 1.42237 1.44115 1.46487 1.53657 1.88424 2.28024 2.43370 2.76238 3.13833 3.22470 3.42604 3.54444 3.76358 3.80743 4.05287 4.17169 4.21093 4.24817 4.29243 4.37745 4.38420 4.53512 4.61694 4.63105 4.67524 4.72487 4.75764 4.82549 4.83515 4.87490 5.03780 5.11983 5.26893 5.28740 5.33276 5.37156 5.50486 5.51823 5.58873 5.61919 5.65691 5.86610 5.90378 5.98342 6.02864 6.17712 6.37851 6.62030 6.88164 7.14090 7.44262 7.69283 8.94644 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.002260 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.051161 B =12384.797963 C =12604.765389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.421 5.421 3 N -0.284 5.284 4 C 0.080 3.920 5 C -0.192 4.192 6 C -0.030 4.030 7 C -0.146 4.146 8 C -0.049 4.049 9 C 0.182 3.818 10 N -0.729 5.729 11 C 0.695 3.305 12 O -0.639 6.639 13 N -0.627 5.627 14 C 0.111 3.889 15 C -0.126 4.126 16 C -0.105 4.105 17 C 0.039 3.961 18 H -0.012 1.012 19 C -0.535 4.535 20 H 0.062 0.938 21 C 0.009 3.991 22 N -0.915 5.915 23 Si 0.957 3.043 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.262 1.262 27 C 0.145 3.855 28 C -0.127 4.127 29 C 0.108 3.892 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.234 0.766 34 H 0.163 0.837 35 H 0.143 0.857 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.406 0.594 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.259 0.741 46 H 0.035 0.965 47 H 0.069 0.931 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.167 24.796 1.574 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.210 5.210 3 N -0.096 5.096 4 C -0.117 4.117 5 C -0.201 4.201 6 C -0.050 4.050 7 C -0.166 4.166 8 C -0.052 4.052 9 C 0.058 3.942 10 N -0.389 5.389 11 C 0.397 3.603 12 O -0.520 6.520 13 N -0.362 5.362 14 C -0.011 4.011 15 C -0.164 4.164 16 C -0.143 4.143 17 C 0.019 3.981 18 H 0.006 0.994 19 C -0.573 4.573 20 H 0.080 0.920 21 C -0.190 4.190 22 N -0.553 5.553 23 Si 0.782 3.218 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.186 1.186 27 C 0.022 3.978 28 C -0.150 4.150 29 C -0.007 4.007 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.250 0.750 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.245 0.755 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.023 25.168 2.406 26.525 hybrid contribution -0.342 -1.763 -0.060 1.797 sum 7.681 23.406 2.346 24.745 Atomic orbital electron populations 1.21978 0.72828 1.05224 1.03880 1.48449 1.06817 1.00843 1.64848 1.76556 1.03754 1.09695 1.19567 1.25736 0.95033 0.93175 0.97750 1.20323 0.93074 0.94273 1.12387 1.20640 0.99026 0.90969 0.94345 1.20809 0.95590 0.96399 1.03814 1.19282 0.93824 0.93041 0.99080 1.19983 1.01962 0.89844 0.82402 1.45092 1.77887 1.06896 1.08990 1.16155 0.78008 0.82898 0.83252 1.90883 1.60994 1.55184 1.44981 1.47673 1.71315 1.12933 1.04314 1.21749 0.98712 0.92992 0.87639 1.21830 0.97206 0.97058 1.00283 1.21509 1.00555 0.94778 0.97410 1.18924 0.92055 0.94428 0.92653 0.99414 1.21513 1.45916 0.96183 0.93721 0.91952 1.25905 0.95529 1.02742 0.94873 1.70122 1.48180 1.36253 1.00780 0.85562 0.77974 0.79856 0.78390 1.20230 1.21321 1.18599 1.21588 0.95981 0.78982 1.01200 1.19748 1.00069 0.88678 1.06514 1.18969 0.91748 0.89566 1.00400 0.90470 0.88566 0.88809 0.75016 0.81939 0.83880 0.92342 0.90808 0.75479 0.88536 0.90173 0.87871 0.93265 0.92372 0.93024 0.93191 0.94651 0.91209 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.37 11.40 127.77 1.46 2.82 16 2 N -0.42 -8.37 4.05 -361.03 -1.46 -9.84 16 3 N -0.28 -5.67 12.40 -53.09 -0.66 -6.33 16 4 C 0.08 1.19 12.28 86.92 1.07 2.26 16 5 C -0.19 -3.34 6.37 -20.24 -0.13 -3.47 16 6 C -0.03 -0.40 10.07 22.27 0.22 -0.18 16 7 C -0.15 -2.34 9.60 22.03 0.21 -2.13 16 8 C -0.05 -0.97 5.22 -20.08 -0.10 -1.08 16 9 C 0.18 4.67 5.78 85.63 0.49 5.17 16 10 N -0.73 -21.07 5.46 -482.29 -2.63 -23.70 16 11 C 0.70 28.67 8.30 179.06 1.49 30.16 16 12 O -0.64 -33.40 15.79 -3.99 -0.06 -33.46 16 13 N -0.63 -25.19 2.98 -837.74 -2.50 -27.68 16 14 C 0.11 3.12 6.40 86.22 0.55 3.67 16 15 C -0.13 -3.64 6.06 30.53 0.19 -3.46 16 16 C -0.10 -4.01 5.11 30.62 0.16 -3.85 16 17 C 0.04 1.96 2.19 -11.46 -0.03 1.94 16 18 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 19 C -0.53 -29.55 8.49 25.60 0.22 -29.33 16 20 H 0.06 3.30 7.75 -2.91 -0.02 3.28 16 21 C 0.01 0.51 5.36 84.65 0.45 0.97 16 22 N -0.91 -56.24 11.61 21.45 0.25 -55.99 16 23 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 26 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 27 C 0.15 7.33 5.46 86.36 0.47 7.80 16 28 C -0.13 -2.58 9.58 22.14 0.21 -2.36 16 29 C 0.11 2.21 6.87 39.21 0.27 2.48 16 30 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.23 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 37 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 38 H 0.41 9.26 5.92 -92.71 -0.55 8.71 16 39 H 0.10 2.00 5.57 -2.39 -0.01 1.99 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.07 4.24 5.38 -2.39 -0.01 4.23 16 48 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -80.24 390.40 2.59 -77.65 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.43 Total: 21.40 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 7.20 Total: 11.40 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -7.00 Total: -123.55 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.06 Total: -33.46 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -80.24 2.59 -77.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595631952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.124 kcal (2) G-P(sol) polarization free energy of solvation -80.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds