Wall clock time and date at job start Wed Apr 1 2020 03:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45197 * 109.46884 * 2 1 4 4 C 1.34638 * 116.99558 * 180.02562 * 3 2 1 5 5 O 1.21511 * 120.00554 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99873 * 180.02562 * 4 3 2 7 7 C 1.46926 * 120.63110 * 180.02562 * 6 4 3 8 8 C 1.53199 * 108.89374 * 126.29685 * 7 6 4 9 9 C 1.53346 * 109.15005 * 54.57283 * 8 7 6 10 10 C 1.50703 * 109.41782 * 178.67175 * 9 8 7 11 11 O 1.21282 * 119.99238 * 87.47015 * 10 9 8 12 12 N 1.34774 * 120.00495 * 267.46886 * 10 9 8 13 13 C 1.46498 * 119.99771 * 3.98610 * 12 10 9 14 14 C 1.50704 * 109.47050 * 84.45004 * 13 12 10 15 15 H 1.07996 * 120.00100 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99488 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99542 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00530 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47090 * 89.99718 * 18 16 14 20 20 H 1.48496 * 109.47200 * 210.00241 * 18 16 14 21 21 H 1.48507 * 109.46940 * 330.00180 * 18 16 14 22 22 C 1.46500 * 119.99838 * 183.98257 * 12 10 9 23 23 C 1.52997 * 109.47066 * 84.77336 * 22 12 10 24 24 O 1.42902 * 109.47149 * 63.26227 * 23 22 12 25 25 C 1.42898 * 114.00272 * 179.97438 * 24 23 22 26 26 C 1.53038 * 109.61141 * 298.71510 * 9 8 7 27 27 C 1.46924 * 120.62968 * 359.97153 * 6 4 3 28 28 H 1.08994 * 109.47215 * 59.99798 * 1 2 3 29 29 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47078 * 299.99662 * 1 2 3 31 31 H 1.09001 * 109.47115 * 239.99556 * 2 1 3 32 32 H 1.09005 * 109.47147 * 119.99734 * 2 1 3 33 33 H 1.08998 * 109.58751 * 246.15242 * 7 6 4 34 34 H 1.08995 * 109.58979 * 6.43718 * 7 6 4 35 35 H 1.08991 * 109.49716 * 174.65771 * 8 7 6 36 36 H 1.09007 * 109.49276 * 294.75498 * 8 7 6 37 37 H 1.09005 * 109.41892 * 58.75784 * 9 8 7 38 38 H 1.08999 * 109.46766 * 204.45023 * 13 12 10 39 39 H 1.09000 * 109.47293 * 324.44821 * 13 12 10 40 40 H 0.97003 * 119.99900 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.46534 * 204.77018 * 22 12 10 42 42 H 1.09002 * 109.47384 * 324.77154 * 22 12 10 43 43 H 1.08994 * 109.47252 * 183.26003 * 23 22 12 44 44 H 1.08996 * 109.47077 * 303.26509 * 23 22 12 45 45 H 1.09001 * 109.47481 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47207 * 300.00420 * 25 24 23 47 47 H 1.09001 * 109.47082 * 60.00202 * 25 24 23 48 48 H 1.09003 * 109.49590 * 301.42088 * 26 9 8 49 49 H 1.09001 * 109.52517 * 181.34352 * 26 9 8 50 50 H 1.09000 * 109.58941 * 353.42623 * 27 6 4 51 51 H 1.09003 * 109.58576 * 113.70334 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3487 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8639 2.7907 0.0000 7 6 5.3182 2.9993 -0.0012 8 6 5.6865 3.9199 -1.1690 9 6 4.8635 5.2101 -1.0713 10 6 5.2447 6.1342 -2.1991 11 8 4.6845 6.0456 -3.2711 12 7 6.2081 7.0589 -2.0165 13 6 6.9451 7.1087 -0.7514 14 6 8.0843 6.1230 -0.7945 15 1 8.2436 5.5201 -1.6762 16 6 8.9237 5.9918 0.2914 17 7 9.9182 5.1320 0.2536 18 14 8.6486 7.0352 1.8162 19 1 7.7389 6.3207 2.7473 20 1 9.9496 7.2829 2.4878 21 1 8.0385 8.3315 1.4255 22 6 6.5182 8.0140 -3.0831 23 6 5.5586 9.2027 -2.9981 24 8 5.7575 9.8878 -1.7599 25 6 4.9062 11.0212 -1.5795 26 6 3.3729 4.8771 -1.1666 27 6 2.9817 3.9657 0.0004 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.6219 3.4614 0.9381 34 1 5.8247 2.0412 -0.1175 35 1 6.7491 4.1578 -1.1236 36 1 5.4654 3.4184 -2.1113 37 1 5.0664 5.6980 -0.1179 38 1 7.3395 8.1135 -0.6001 39 1 6.2751 6.8540 0.0698 40 1 10.5085 5.0394 1.0177 41 1 7.5435 8.3659 -2.9689 42 1 6.4072 7.5260 -4.0515 43 1 5.7513 9.8850 -3.8259 44 1 4.5307 8.8445 -3.0541 45 1 5.1186 11.4856 -0.6165 46 1 5.0857 11.7412 -2.3780 47 1 3.8646 10.7012 -1.6063 48 1 3.1737 4.3668 -2.1090 49 1 2.7904 5.7972 -1.1209 50 1 1.9465 3.6455 -0.1172 51 1 3.0925 4.5054 0.9410 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728613869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:04 Heat of formation + Delta-G solvation = -161.736833 kcal Electronic energy + Delta-G solvation = -32040.934613 eV Core-core repulsion = 27747.814346 eV Total energy + Delta-G solvation = -4293.120267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.58139 -39.61316 -37.91721 -37.30625 -36.11330 -35.04640 -33.03622 -32.51360 -31.63737 -30.82042 -30.01716 -27.61384 -26.43203 -25.64212 -23.60009 -23.10764 -22.60994 -22.44241 -21.28093 -19.79253 -18.44558 -17.74282 -17.05226 -16.90411 -16.71018 -16.58256 -16.00997 -15.79679 -15.25426 -14.77777 -14.73510 -14.61313 -14.28914 -14.10985 -13.66769 -13.56434 -13.41807 -13.12057 -12.92250 -12.65457 -12.60141 -12.25940 -12.16667 -12.00389 -11.86316 -11.75766 -11.68721 -11.60766 -11.47507 -11.05568 -10.98286 -10.82988 -10.62096 -10.54991 -10.47278 -10.22872 -10.17771 -10.09623 -9.57211 -9.53058 -9.05540 -8.68417 -8.54566 -7.75766 -6.20515 -4.21261 2.22136 2.94571 3.18987 3.29018 3.29819 3.32109 3.76582 3.91519 4.02309 4.29037 4.79741 4.83056 4.94357 5.04963 5.10061 5.14147 5.16462 5.25964 5.32441 5.36135 5.36802 5.50791 5.52668 5.53178 5.60514 5.60911 5.63378 5.69647 5.73954 5.77210 5.83353 5.95984 6.02917 6.08189 6.18558 6.24890 6.26329 6.44296 6.46314 6.53569 6.68709 6.83442 6.96156 7.30126 7.37262 7.47666 7.47847 8.15009 8.40028 8.41109 8.81624 8.92354 9.39236 10.91255 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.003650 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.968978 B = 7668.800589 C = 9315.350330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 O -0.372 6.372 4 C 0.649 3.351 5 O -0.577 6.577 6 N -0.590 5.590 7 C 0.131 3.869 8 C -0.126 4.126 9 C -0.100 4.100 10 C 0.526 3.474 11 O -0.574 6.574 12 N -0.582 5.582 13 C 0.212 3.788 14 C -0.540 4.540 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.888 5.888 18 Si 0.865 3.135 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.261 1.261 22 C 0.122 3.878 23 C 0.047 3.953 24 O -0.380 6.380 25 C 0.033 3.967 26 C -0.117 4.117 27 C 0.114 3.886 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.043 0.957 39 H 0.027 0.973 40 H 0.266 0.734 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.082 0.918 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.090 0.910 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.108 1.193 0.108 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.007 3.993 3 O -0.287 6.287 4 C 0.403 3.597 5 O -0.466 6.466 6 N -0.330 5.330 7 C 0.011 3.989 8 C -0.164 4.164 9 C -0.121 4.121 10 C 0.314 3.686 11 O -0.455 6.455 12 N -0.311 5.311 13 C 0.091 3.909 14 C -0.578 4.578 15 H 0.098 0.902 16 C -0.124 4.124 17 N -0.526 5.526 18 Si 0.692 3.308 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.185 1.185 22 C -0.002 4.002 23 C -0.031 4.031 24 O -0.299 6.299 25 C -0.064 4.064 26 C -0.156 4.156 27 C -0.008 4.008 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.100 0.900 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.108 0.892 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.896 0.680 -0.186 15.912 hybrid contribution -0.090 0.680 0.760 1.024 sum -15.986 1.360 0.574 16.054 Atomic orbital electron populations 1.21815 0.92774 1.02863 1.03453 1.22894 0.94600 0.79174 1.02681 1.86216 1.22501 1.32708 1.87258 1.18001 0.80926 0.84242 0.76505 1.90977 1.59718 1.39442 1.56475 1.47106 1.08029 1.02694 1.75202 1.21741 0.76161 1.01476 0.99523 1.22085 1.03632 0.92968 0.97765 1.21263 0.95352 0.96496 0.98997 1.20392 0.79022 0.80331 0.88811 1.90582 1.55454 1.71959 1.27553 1.47852 1.35485 1.30661 1.17125 1.19853 0.91706 0.98691 0.80690 1.21380 1.11356 1.21937 1.03145 0.90224 1.24826 0.94615 0.94807 0.98199 1.69889 1.16632 1.34907 1.31143 0.87000 0.78169 0.81891 0.83741 1.19929 1.21060 1.18537 1.21353 0.98862 0.87781 0.92231 1.23050 0.99923 0.94083 0.86004 1.87999 1.60643 1.42703 1.38526 1.22684 0.93852 0.88489 1.01413 1.21786 0.95229 0.99552 0.99002 1.21731 0.94088 0.86073 0.98953 0.91494 0.90196 0.91568 0.91294 0.91340 0.90399 0.88477 0.85988 0.91916 0.88544 0.93901 0.95571 0.92376 0.89349 0.89372 0.93053 0.93226 0.89977 0.94547 0.94557 0.90500 0.90823 0.89167 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.29 37.16 0.38 -0.73 16 2 C 0.08 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -5.09 8.86 -40.32 -0.36 -5.45 16 4 C 0.65 10.63 8.43 54.06 0.46 11.08 16 5 O -0.58 -11.04 15.54 -19.28 -0.30 -11.34 16 6 N -0.59 -9.11 2.97 -178.58 -0.53 -9.64 16 7 C 0.13 2.19 6.42 -3.71 -0.02 2.16 16 8 C -0.13 -2.28 5.37 -26.45 -0.14 -2.42 16 9 C -0.10 -1.72 1.91 -91.57 -0.18 -1.89 16 10 C 0.53 10.30 6.61 -10.98 -0.07 10.23 16 11 O -0.57 -12.24 15.90 5.56 0.09 -12.15 16 12 N -0.58 -11.48 2.41 -175.06 -0.42 -11.90 16 13 C 0.21 4.53 3.85 -5.19 -0.02 4.51 16 14 C -0.54 -13.39 8.03 -34.44 -0.28 -13.67 16 15 H 0.08 2.21 7.59 -52.49 -0.40 1.81 16 16 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 17 N -0.89 -24.84 13.96 55.43 0.77 -24.07 16 18 Si 0.87 19.38 27.47 -169.99 -4.67 14.71 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 22 C 0.12 2.11 5.76 -4.04 -0.02 2.09 16 23 C 0.05 0.71 6.25 37.16 0.23 0.94 16 24 O -0.38 -6.09 10.16 -35.23 -0.36 -6.45 16 25 C 0.03 0.38 11.01 101.05 1.11 1.50 16 26 C -0.12 -1.70 4.97 -26.63 -0.13 -1.83 16 27 C 0.11 1.47 6.44 -3.73 -0.02 1.45 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.10 1.72 7.00 -51.93 -0.36 1.35 16 35 H 0.12 2.56 5.58 -51.93 -0.29 2.27 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.10 1.65 5.88 -51.93 -0.31 1.35 16 38 H 0.04 0.96 6.77 -51.93 -0.35 0.60 16 39 H 0.03 0.55 5.35 -51.93 -0.28 0.27 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.09 1.54 8.03 -51.93 -0.42 1.12 16 42 H 0.09 1.51 7.53 -51.93 -0.39 1.12 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 1.23 7.90 -51.93 -0.41 0.82 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.09 1.04 6.93 -51.93 -0.36 0.68 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 405.88 15.07 6.12 6.12 Total: -1.00 -31.44 405.88 -6.88 -38.33 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -8.65 Total: 5.38 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 1.43 Total: 16.47 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.18 Total: -45.62 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.93 Total: -35.38 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.67 Total: 14.71 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.44 -6.88 -38.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728613869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.411 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds