Wall clock time and date at job start Wed Apr 1 2020 03:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45197 * 109.46884 * 2 1 4 4 C 1.34638 * 116.99558 * 180.02562 * 3 2 1 5 5 O 1.21511 * 120.00554 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99873 * 180.02562 * 4 3 2 7 7 C 1.46926 * 120.63110 * 180.02562 * 6 4 3 8 8 C 1.53199 * 108.89374 * 126.29685 * 7 6 4 9 9 C 1.53346 * 109.15005 * 54.57283 * 8 7 6 10 10 C 1.50703 * 109.41782 * 178.67175 * 9 8 7 11 11 O 1.21282 * 119.99238 * 87.47015 * 10 9 8 12 12 N 1.34774 * 120.00495 * 267.46886 * 10 9 8 13 13 C 1.46498 * 119.99771 * 3.98610 * 12 10 9 14 14 C 1.50704 * 109.47050 * 84.45004 * 13 12 10 15 15 H 1.07996 * 120.00100 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99488 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99542 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00530 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47090 * 89.99718 * 18 16 14 20 20 H 1.48496 * 109.47200 * 210.00241 * 18 16 14 21 21 H 1.48507 * 109.46940 * 330.00180 * 18 16 14 22 22 C 1.46500 * 119.99838 * 183.98257 * 12 10 9 23 23 C 1.52997 * 109.47066 * 84.77336 * 22 12 10 24 24 O 1.42902 * 109.47149 * 63.26227 * 23 22 12 25 25 C 1.42898 * 114.00272 * 179.97438 * 24 23 22 26 26 C 1.53038 * 109.61141 * 298.71510 * 9 8 7 27 27 C 1.46924 * 120.62968 * 359.97153 * 6 4 3 28 28 H 1.08994 * 109.47215 * 59.99798 * 1 2 3 29 29 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47078 * 299.99662 * 1 2 3 31 31 H 1.09001 * 109.47115 * 239.99556 * 2 1 3 32 32 H 1.09005 * 109.47147 * 119.99734 * 2 1 3 33 33 H 1.08998 * 109.58751 * 246.15242 * 7 6 4 34 34 H 1.08995 * 109.58979 * 6.43718 * 7 6 4 35 35 H 1.08991 * 109.49716 * 174.65771 * 8 7 6 36 36 H 1.09007 * 109.49276 * 294.75498 * 8 7 6 37 37 H 1.09005 * 109.41892 * 58.75784 * 9 8 7 38 38 H 1.08999 * 109.46766 * 204.45023 * 13 12 10 39 39 H 1.09000 * 109.47293 * 324.44821 * 13 12 10 40 40 H 0.97003 * 119.99900 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.46534 * 204.77018 * 22 12 10 42 42 H 1.09002 * 109.47384 * 324.77154 * 22 12 10 43 43 H 1.08994 * 109.47252 * 183.26003 * 23 22 12 44 44 H 1.08996 * 109.47077 * 303.26509 * 23 22 12 45 45 H 1.09001 * 109.47481 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47207 * 300.00420 * 25 24 23 47 47 H 1.09001 * 109.47082 * 60.00202 * 25 24 23 48 48 H 1.09003 * 109.49590 * 301.42088 * 26 9 8 49 49 H 1.09001 * 109.52517 * 181.34352 * 26 9 8 50 50 H 1.09000 * 109.58941 * 353.42623 * 27 6 4 51 51 H 1.09003 * 109.58576 * 113.70334 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3487 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8639 2.7907 0.0000 7 6 5.3182 2.9993 -0.0012 8 6 5.6865 3.9199 -1.1690 9 6 4.8635 5.2101 -1.0713 10 6 5.2447 6.1342 -2.1991 11 8 4.6845 6.0456 -3.2711 12 7 6.2081 7.0589 -2.0165 13 6 6.9451 7.1087 -0.7514 14 6 8.0843 6.1230 -0.7945 15 1 8.2436 5.5201 -1.6762 16 6 8.9237 5.9918 0.2914 17 7 9.9182 5.1320 0.2536 18 14 8.6486 7.0352 1.8162 19 1 7.7389 6.3207 2.7473 20 1 9.9496 7.2829 2.4878 21 1 8.0385 8.3315 1.4255 22 6 6.5182 8.0140 -3.0831 23 6 5.5586 9.2027 -2.9981 24 8 5.7575 9.8878 -1.7599 25 6 4.9062 11.0212 -1.5795 26 6 3.3729 4.8771 -1.1666 27 6 2.9817 3.9657 0.0004 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.6219 3.4614 0.9381 34 1 5.8247 2.0412 -0.1175 35 1 6.7491 4.1578 -1.1236 36 1 5.4654 3.4184 -2.1113 37 1 5.0664 5.6980 -0.1179 38 1 7.3395 8.1135 -0.6001 39 1 6.2751 6.8540 0.0698 40 1 10.5085 5.0394 1.0177 41 1 7.5435 8.3659 -2.9689 42 1 6.4072 7.5260 -4.0515 43 1 5.7513 9.8850 -3.8259 44 1 4.5307 8.8445 -3.0541 45 1 5.1186 11.4856 -0.6165 46 1 5.0857 11.7412 -2.3780 47 1 3.8646 10.7012 -1.6063 48 1 3.1737 4.3668 -2.1090 49 1 2.7904 5.7972 -1.1209 50 1 1.9465 3.6455 -0.1172 51 1 3.0925 4.5054 0.9410 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728613869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:03 Heat of formation + Delta-G solvation = -181.825516 kcal Electronic energy + Delta-G solvation = -32041.805723 eV Core-core repulsion = 27747.814346 eV Total energy + Delta-G solvation = -4293.991378 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.85518 -41.07010 -39.11686 -38.51997 -37.37734 -36.68135 -34.58857 -34.19381 -32.53078 -32.04850 -31.43313 -29.33855 -27.56178 -26.81255 -24.70722 -24.47759 -24.17344 -23.67791 -22.52000 -21.06768 -19.90393 -19.06491 -18.94954 -18.25305 -18.00394 -17.71585 -17.40325 -17.02600 -16.62678 -16.15545 -15.95219 -15.81989 -15.64862 -15.48432 -15.06000 -14.82673 -14.71153 -14.42291 -14.26723 -13.95933 -13.73839 -13.62198 -13.51934 -13.26838 -13.15689 -12.93408 -12.85906 -12.75484 -12.61652 -12.50093 -12.48847 -12.27125 -12.01247 -11.94009 -11.82352 -11.67456 -11.52833 -11.51007 -11.40094 -10.74171 -10.66197 -10.48535 -9.84135 -9.38971 -8.21687 -6.26565 1.06869 1.43195 1.47638 1.56530 1.66441 1.73576 2.29058 2.40801 2.83483 2.92311 3.12770 3.59816 3.75137 3.84822 4.04196 4.04919 4.11444 4.14349 4.15430 4.25908 4.29558 4.36583 4.40690 4.43139 4.55936 4.56820 4.60308 4.63287 4.69550 4.74533 4.78039 4.84518 4.86524 4.90151 4.91578 4.95590 4.99309 5.07265 5.14940 5.16147 5.31129 5.39774 5.48784 5.53107 5.73719 6.24404 6.24844 6.30343 6.66008 6.78331 7.15561 7.29912 7.40845 8.93449 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010453 B = 0.003650 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.968978 B = 7668.800589 C = 9315.350330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 O -0.366 6.366 4 C 0.647 3.353 5 O -0.612 6.612 6 N -0.590 5.590 7 C 0.140 3.860 8 C -0.115 4.115 9 C -0.097 4.097 10 C 0.521 3.479 11 O -0.593 6.593 12 N -0.587 5.587 13 C 0.225 3.775 14 C -0.529 4.529 15 H 0.036 0.964 16 C 0.028 3.972 17 N -0.938 5.938 18 Si 0.928 3.072 19 H -0.258 1.258 20 H -0.291 1.291 21 H -0.244 1.244 22 C 0.113 3.887 23 C 0.059 3.941 24 O -0.409 6.409 25 C 0.027 3.973 26 C -0.107 4.107 27 C 0.117 3.883 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.103 0.897 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.266 0.734 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.044 0.956 48 H 0.059 0.941 49 H 0.094 0.906 50 H 0.111 0.889 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.024 2.973 1.537 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.003 4.003 3 O -0.280 6.280 4 C 0.402 3.598 5 O -0.504 6.504 6 N -0.330 5.330 7 C 0.019 3.981 8 C -0.153 4.153 9 C -0.118 4.118 10 C 0.310 3.690 11 O -0.476 6.476 12 N -0.316 5.316 13 C 0.103 3.897 14 C -0.567 4.567 15 H 0.054 0.946 16 C -0.172 4.172 17 N -0.578 5.578 18 Si 0.752 3.248 19 H -0.183 1.183 20 H -0.218 1.218 21 H -0.167 1.167 22 C -0.010 4.010 23 C -0.019 4.019 24 O -0.328 6.328 25 C -0.069 4.069 26 C -0.146 4.146 27 C -0.005 4.005 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.111 0.889 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.078 0.922 49 H 0.113 0.887 50 H 0.129 0.871 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.865 2.493 1.226 19.068 hybrid contribution 0.823 0.087 0.186 0.848 sum -18.041 2.580 1.412 18.279 Atomic orbital electron populations 1.21827 0.89734 1.04540 1.03837 1.23252 0.96848 0.77796 1.02411 1.86235 1.20526 1.34503 1.86743 1.18149 0.81659 0.83981 0.76025 1.90952 1.60774 1.40654 1.58018 1.47124 1.07668 1.03431 1.74771 1.21502 0.77340 1.00231 0.99033 1.21847 1.01756 0.93945 0.97793 1.21298 0.97149 0.95138 0.98234 1.20807 0.78703 0.80287 0.89176 1.90565 1.56180 1.72395 1.28456 1.47916 1.35241 1.31322 1.17134 1.19604 0.90849 0.97248 0.82026 1.21443 1.12304 1.21548 1.01410 0.94579 1.25601 0.94192 0.95926 1.01453 1.70045 1.18201 1.37254 1.32271 0.85996 0.78067 0.80902 0.79865 1.18297 1.21767 1.16710 1.21513 0.99512 0.88533 0.91446 1.22872 0.98499 0.93525 0.86973 1.87939 1.61929 1.44150 1.38782 1.22891 0.93683 0.87582 1.02751 1.21730 0.93174 1.00682 0.99003 1.21932 0.94461 0.84844 0.99225 0.91284 0.87860 0.90925 0.91922 0.91434 0.89506 0.90134 0.89414 0.93397 0.87890 0.93928 0.93945 0.92502 0.89922 0.89718 0.90244 0.93768 0.88877 0.92771 0.93747 0.92195 0.88732 0.87093 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 10.29 71.98 0.74 -0.99 16 2 C 0.07 1.43 6.19 71.98 0.45 1.88 16 3 O -0.37 -9.45 8.86 -55.48 -0.49 -9.94 16 4 C 0.65 20.80 8.43 129.79 1.09 21.90 16 5 O -0.61 -23.74 15.54 19.81 0.31 -23.43 16 6 N -0.59 -17.63 2.97 -949.32 -2.82 -20.45 16 7 C 0.14 4.72 6.42 86.36 0.55 5.28 16 8 C -0.11 -4.27 5.37 30.78 0.17 -4.11 16 9 C -0.10 -3.27 1.91 -11.41 -0.02 -3.29 16 10 C 0.52 20.32 6.61 87.66 0.58 20.90 16 11 O -0.59 -25.27 15.90 -3.04 -0.05 -25.32 16 12 N -0.59 -23.07 2.41 -826.15 -1.99 -25.06 16 13 C 0.22 9.45 3.85 85.63 0.33 9.78 16 14 C -0.53 -26.86 8.03 25.60 0.21 -26.66 16 15 H 0.04 2.12 7.59 -2.91 -0.02 2.10 16 16 C 0.03 1.44 5.47 84.65 0.46 1.91 16 17 N -0.94 -54.20 13.96 21.45 0.30 -53.90 16 18 Si 0.93 39.27 27.47 68.60 1.88 41.15 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 20 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 22 C 0.11 3.90 5.76 86.38 0.50 4.40 16 23 C 0.06 1.66 6.25 71.98 0.45 2.11 16 24 O -0.41 -12.15 10.16 -148.98 -1.51 -13.66 16 25 C 0.03 0.55 11.01 113.37 1.25 1.80 16 26 C -0.11 -2.90 4.97 30.66 0.15 -2.75 16 27 C 0.12 2.68 6.44 86.35 0.56 3.24 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.08 2.98 7.00 -2.39 -0.02 2.96 16 35 H 0.09 3.91 5.58 -2.39 -0.01 3.90 16 36 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.10 3.33 5.88 -2.38 -0.01 3.32 16 38 H 0.04 1.83 6.77 -2.39 -0.02 1.81 16 39 H 0.04 1.68 5.35 -2.39 -0.01 1.66 16 40 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.08 2.90 8.03 -2.39 -0.02 2.88 16 42 H 0.08 2.94 7.53 -2.39 -0.02 2.92 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 1.85 7.90 -2.39 -0.02 1.83 16 49 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.11 2.16 6.93 -2.39 -0.02 2.14 16 51 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -70.21 405.88 3.94 -66.26 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.85 Total: 28.94 kcal Atomic # 6 Polarization: 27.94 SS G_CDS: 7.46 Total: 35.40 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -4.51 Total: -99.41 kcal Atomic # 8 Polarization: -70.61 SS G_CDS: -1.75 Total: -72.35 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.88 Total: 41.15 kcal Total: -70.21 3.94 -66.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728613869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.562 kcal (2) G-P(sol) polarization free energy of solvation -70.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds