Wall clock time and date at job start Wed Apr 1 2020 01:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46505 * 2 1 4 4 C 1.46498 * 120.00312 * 269.99894 * 3 2 1 5 5 C 1.50694 * 109.47571 * 270.00580 * 4 3 2 6 6 H 1.08000 * 119.99923 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00355 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00154 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99749 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47308 * 89.99954 * 9 7 5 11 11 H 1.48499 * 109.46837 * 209.99774 * 9 7 5 12 12 H 1.48501 * 109.47243 * 329.99809 * 9 7 5 13 13 C 1.34776 * 120.00093 * 90.00477 * 3 2 1 14 14 O 1.21284 * 120.00263 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99894 * 359.97438 * 13 3 2 16 16 N 1.46896 * 109.47461 * 173.86154 * 15 13 3 17 17 C 1.46900 * 111.00421 * 163.27008 * 16 15 13 18 18 C 1.52997 * 109.47136 * 196.01540 * 17 16 15 19 19 C 1.50701 * 109.47230 * 173.09327 * 18 17 16 20 20 O 1.20825 * 119.99550 * 359.97438 * 19 18 17 21 21 O 1.34224 * 120.00095 * 179.97438 * 19 18 17 22 22 C 1.46908 * 110.99827 * 287.22073 * 16 15 13 23 23 C 1.53181 * 109.54037 * 149.90593 * 22 16 15 24 24 C 1.53094 * 109.16114 * 176.84850 * 23 22 16 25 25 O 1.42904 * 109.41251 * 302.39473 * 24 23 22 26 26 C 1.42908 * 114.09870 * 61.16213 * 25 24 23 27 27 C 1.53091 * 109.41162 * 298.83696 * 26 25 24 28 28 H 1.08997 * 109.47262 * 60.00159 * 1 2 3 29 29 H 1.09007 * 109.46466 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47230 * 299.99516 * 1 2 3 31 31 H 1.09004 * 109.46854 * 240.00880 * 2 1 3 32 32 H 1.08997 * 109.47262 * 119.99841 * 2 1 3 33 33 H 1.09007 * 109.46904 * 30.00323 * 4 3 2 34 34 H 1.09002 * 109.47322 * 150.00323 * 4 3 2 35 35 H 0.96996 * 120.00110 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47003 * 53.85882 * 15 13 3 37 37 H 1.09003 * 109.47009 * 293.86446 * 15 13 3 38 38 H 1.09007 * 109.46311 * 316.01267 * 17 16 15 39 39 H 1.08993 * 109.46991 * 76.01196 * 17 16 15 40 40 H 1.08995 * 109.47089 * 293.09545 * 18 17 16 41 41 H 1.08999 * 109.47124 * 53.09268 * 18 17 16 42 42 H 0.96703 * 116.99758 * 179.97438 * 21 19 18 43 43 H 1.09008 * 109.61238 * 29.68978 * 22 16 15 44 44 H 1.08994 * 109.52705 * 296.75443 * 23 22 16 45 45 H 1.09002 * 109.51931 * 56.94485 * 23 22 16 46 46 H 1.08988 * 109.48202 * 182.41413 * 24 23 22 47 47 H 1.09001 * 109.48173 * 62.37147 * 24 23 22 48 48 H 1.08998 * 109.47897 * 178.85966 * 26 25 24 49 49 H 1.08999 * 109.49108 * 58.82877 * 26 25 24 50 50 H 1.09007 * 109.52432 * 297.70526 * 27 26 25 51 51 H 1.08997 * 109.52372 * 177.51804 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6856 1.8353 -1.7038 6 1 4.3427 1.2312 -1.0959 7 6 4.1488 2.3900 -2.8780 8 7 5.3910 2.1838 -3.2575 9 14 3.0124 3.4355 -3.9291 10 1 3.1158 4.8558 -3.5080 11 1 3.4053 3.3124 -5.3559 12 1 1.6127 2.9695 -3.7591 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.4469 2.1503 3.5850 17 6 1.8758 1.6949 4.8595 18 6 2.0325 2.7953 5.9108 19 6 1.2996 2.3986 7.1664 20 8 0.7118 1.3441 7.2151 21 8 1.2998 3.2167 8.2305 22 6 3.9141 2.1894 3.6496 23 6 4.3659 3.5348 4.2259 24 6 5.8907 3.5362 4.3629 25 8 6.2939 2.4458 5.1939 26 6 5.9400 1.1596 4.6814 27 6 4.4172 1.0627 4.5572 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.5815 1.6878 -2.0284 34 1 2.0953 3.1412 -1.1383 35 1 5.7170 2.5744 -4.0833 36 1 2.5380 0.3634 2.4840 37 1 0.9246 1.1092 2.5789 38 1 0.8179 1.4700 4.7237 39 1 2.3983 0.7979 5.1917 40 1 3.0898 2.9348 6.1359 41 1 1.6170 3.7268 5.5264 42 1 0.8156 2.9193 9.0129 43 1 4.3279 2.0639 2.6490 44 1 4.0596 4.3390 3.5569 45 1 3.9119 3.6822 5.2059 46 1 6.2144 4.4748 4.8124 47 1 6.3443 3.4293 3.3775 48 1 6.2992 0.3863 5.3604 49 1 6.3943 1.0215 3.7002 50 1 3.9643 1.1602 5.5439 51 1 4.1475 0.0991 4.1252 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829692772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:09 Heat of formation + Delta-G solvation = -149.754307 kcal Electronic energy + Delta-G solvation = -32249.296444 eV Core-core repulsion = 27956.695778 eV Total energy + Delta-G solvation = -4292.600666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.79791 -40.00037 -38.91898 -37.15073 -36.33399 -35.30054 -32.80301 -32.16757 -31.82399 -31.12038 -30.33531 -28.32185 -26.35926 -25.20805 -23.68427 -23.12069 -22.99004 -21.77159 -20.87152 -19.88548 -18.37531 -18.23364 -17.00663 -16.91830 -16.86898 -16.49514 -16.24889 -15.94475 -15.67177 -15.14504 -14.93580 -14.67677 -14.25376 -14.16445 -13.99371 -13.49320 -13.33177 -13.24590 -13.18534 -12.93967 -12.51643 -12.48875 -12.22138 -12.15778 -11.98773 -11.83583 -11.76575 -11.67151 -11.40468 -11.12139 -11.00648 -10.96264 -10.86473 -10.68957 -10.62176 -10.50743 -10.17475 -10.10248 -9.56701 -9.55689 -9.02694 -8.60576 -8.23134 -7.71190 -6.10768 -4.09327 1.95590 2.68687 3.27840 3.33798 3.35858 3.36325 3.57335 3.86394 4.07457 4.38097 4.52917 4.66995 4.68912 4.84804 4.92168 4.99194 5.06941 5.14277 5.16656 5.21534 5.23769 5.33698 5.37636 5.42752 5.46964 5.53854 5.55233 5.57990 5.65036 5.67990 5.72279 5.76198 5.83119 5.95326 6.00514 6.12894 6.20005 6.24145 6.33101 6.37509 6.68114 6.89475 6.99064 7.00789 7.18217 7.36105 7.60111 7.62568 8.26943 8.45436 8.91102 9.02481 9.50093 11.02598 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.003375 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.781390 B = 8295.474815 C = 9528.532334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.519 6.519 15 C 0.038 3.962 16 N -0.512 5.512 17 C 0.058 3.942 18 C -0.122 4.122 19 C 0.482 3.518 20 O -0.520 6.520 21 O -0.517 6.517 22 C 0.086 3.914 23 C -0.150 4.150 24 C 0.058 3.942 25 O -0.386 6.386 26 C 0.065 3.935 27 C -0.191 4.191 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.409 0.591 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.055 0.945 48 H 0.091 0.909 49 H 0.054 0.946 50 H 0.078 0.922 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.983 -2.849 19.504 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.394 6.394 15 C -0.093 4.093 16 N -0.234 5.234 17 C -0.070 4.070 18 C -0.159 4.159 19 C 0.324 3.676 20 O -0.409 6.409 21 O -0.329 6.329 22 C -0.022 4.022 23 C -0.188 4.188 24 C -0.019 4.019 25 O -0.305 6.305 26 C -0.012 4.012 27 C -0.230 4.230 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.267 0.733 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.113 0.887 47 H 0.073 0.927 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.097 0.903 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.665 -1.833 19.063 20.277 hybrid contribution -0.755 -0.684 -0.374 1.086 sum -7.421 -2.518 18.689 20.265 Atomic orbital electron populations 1.22234 0.96763 1.01556 1.02259 1.21440 0.93420 0.84009 1.02960 1.47950 1.64634 1.13296 1.06994 1.19611 0.97171 0.93372 0.80076 1.21313 0.95354 1.32835 1.07050 0.90922 1.24850 0.94975 0.95805 0.97356 1.69893 1.15135 1.45043 1.23593 0.86856 0.81482 0.81630 0.79748 1.19903 1.21128 1.19091 1.20123 0.78806 0.87151 0.84596 1.90666 1.44360 1.17596 1.86808 1.22091 1.01864 0.94741 0.90584 1.61649 1.08175 1.51860 1.01757 1.22023 1.01061 0.95360 0.88565 1.21757 1.02288 1.02629 0.89227 1.23608 0.77818 0.81294 0.84872 1.90721 1.42436 1.24568 1.83142 1.84556 1.71448 1.51396 1.25483 1.21786 0.86577 0.94161 0.99714 1.22491 0.95669 0.98366 1.02263 1.22664 0.94161 0.89836 0.95260 1.87888 1.79844 1.14297 1.48473 1.22488 0.93507 0.85602 0.99650 1.22977 0.97929 1.00317 1.01764 0.92191 0.92023 0.92989 0.89780 0.91639 0.95411 0.94617 0.92581 0.92143 0.88367 0.89872 0.92460 0.86337 0.86349 0.73274 0.89189 0.89140 0.90538 0.88715 0.92666 0.89102 0.92813 0.90318 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.11 1.57 5.96 -4.04 -0.02 1.55 16 3 N -0.60 -11.69 2.46 -175.05 -0.43 -12.12 16 4 C 0.22 5.20 4.23 -5.20 -0.02 5.18 16 5 C -0.53 -14.79 9.94 -34.44 -0.34 -15.13 16 6 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 9 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 13 C 0.51 9.77 7.01 -10.98 -0.08 9.69 16 14 O -0.52 -12.07 15.22 5.55 0.08 -11.99 16 15 C 0.04 0.53 4.12 -4.98 -0.02 0.51 16 16 N -0.51 -6.76 3.95 -227.85 -0.90 -7.66 16 17 C 0.06 0.62 3.85 -3.83 -0.01 0.61 16 18 C -0.12 -1.15 4.56 -27.88 -0.13 -1.27 16 19 C 0.48 4.69 8.33 36.01 0.30 4.99 16 20 O -0.52 -6.48 16.64 -18.75 -0.31 -6.79 16 21 O -0.52 -3.89 13.42 -39.24 -0.53 -4.42 16 22 C 0.09 1.16 1.62 -67.53 -0.11 1.05 16 23 C -0.15 -1.88 5.39 -26.59 -0.14 -2.02 16 24 C 0.06 0.71 6.84 37.21 0.25 0.96 16 25 O -0.39 -4.94 10.77 -35.23 -0.38 -5.32 16 26 C 0.07 0.74 6.84 37.20 0.25 0.99 16 27 C -0.19 -2.12 4.15 -26.60 -0.11 -2.23 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.05 0.60 7.41 -51.93 -0.38 0.21 16 31 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.07 0.82 6.27 -51.93 -0.33 0.49 16 33 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 34 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.06 0.77 6.62 -51.93 -0.34 0.42 16 37 H 0.10 1.17 6.98 -51.93 -0.36 0.81 16 38 H 0.08 0.90 7.46 -51.93 -0.39 0.52 16 39 H 0.06 0.60 5.46 -51.93 -0.28 0.32 16 40 H 0.12 1.09 4.50 -51.93 -0.23 0.85 16 41 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.41 1.36 9.10 45.56 0.41 1.78 16 43 H 0.09 1.54 6.83 -51.92 -0.35 1.18 16 44 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.08 0.83 4.31 -51.93 -0.22 0.60 16 46 H 0.09 0.98 8.14 -51.94 -0.42 0.56 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.08 0.82 5.10 -51.93 -0.26 0.55 16 51 H 0.07 0.76 7.79 -51.93 -0.40 0.35 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -35.49 394.55 -7.58 -43.07 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.27 Total: 3.96 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 0.10 Total: 5.17 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.56 Total: -46.34 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.13 Total: -28.51 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.49 -7.58 -43.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.682 kcal (2) G-P(sol) polarization free energy of solvation -35.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds