Wall clock time and date at job start Wed Apr 1 2020 01:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46505 * 2 1 4 4 C 1.46498 * 120.00312 * 269.99894 * 3 2 1 5 5 C 1.50694 * 109.47571 * 270.00580 * 4 3 2 6 6 H 1.08000 * 119.99923 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00355 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00154 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99749 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47308 * 89.99954 * 9 7 5 11 11 H 1.48499 * 109.46837 * 209.99774 * 9 7 5 12 12 H 1.48501 * 109.47243 * 329.99809 * 9 7 5 13 13 C 1.34776 * 120.00093 * 90.00477 * 3 2 1 14 14 O 1.21284 * 120.00263 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99894 * 359.97438 * 13 3 2 16 16 N 1.46896 * 109.47461 * 173.86154 * 15 13 3 17 17 C 1.46900 * 111.00421 * 163.27008 * 16 15 13 18 18 C 1.52997 * 109.47136 * 196.01540 * 17 16 15 19 19 C 1.50701 * 109.47230 * 173.09327 * 18 17 16 20 20 O 1.20825 * 119.99550 * 359.97438 * 19 18 17 21 21 O 1.34224 * 120.00095 * 179.97438 * 19 18 17 22 22 C 1.46908 * 110.99827 * 287.22073 * 16 15 13 23 23 C 1.53181 * 109.54037 * 149.90593 * 22 16 15 24 24 C 1.53094 * 109.16114 * 176.84850 * 23 22 16 25 25 O 1.42904 * 109.41251 * 302.39473 * 24 23 22 26 26 C 1.42908 * 114.09870 * 61.16213 * 25 24 23 27 27 C 1.53091 * 109.41162 * 298.83696 * 26 25 24 28 28 H 1.08997 * 109.47262 * 60.00159 * 1 2 3 29 29 H 1.09007 * 109.46466 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47230 * 299.99516 * 1 2 3 31 31 H 1.09004 * 109.46854 * 240.00880 * 2 1 3 32 32 H 1.08997 * 109.47262 * 119.99841 * 2 1 3 33 33 H 1.09007 * 109.46904 * 30.00323 * 4 3 2 34 34 H 1.09002 * 109.47322 * 150.00323 * 4 3 2 35 35 H 0.96996 * 120.00110 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47003 * 53.85882 * 15 13 3 37 37 H 1.09003 * 109.47009 * 293.86446 * 15 13 3 38 38 H 1.09007 * 109.46311 * 316.01267 * 17 16 15 39 39 H 1.08993 * 109.46991 * 76.01196 * 17 16 15 40 40 H 1.08995 * 109.47089 * 293.09545 * 18 17 16 41 41 H 1.08999 * 109.47124 * 53.09268 * 18 17 16 42 42 H 0.96703 * 116.99758 * 179.97438 * 21 19 18 43 43 H 1.09008 * 109.61238 * 29.68978 * 22 16 15 44 44 H 1.08994 * 109.52705 * 296.75443 * 23 22 16 45 45 H 1.09002 * 109.51931 * 56.94485 * 23 22 16 46 46 H 1.08988 * 109.48202 * 182.41413 * 24 23 22 47 47 H 1.09001 * 109.48173 * 62.37147 * 24 23 22 48 48 H 1.08998 * 109.47897 * 178.85966 * 26 25 24 49 49 H 1.08999 * 109.49108 * 58.82877 * 26 25 24 50 50 H 1.09007 * 109.52432 * 297.70526 * 27 26 25 51 51 H 1.08997 * 109.52372 * 177.51804 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6856 1.8353 -1.7038 6 1 4.3427 1.2312 -1.0959 7 6 4.1488 2.3900 -2.8780 8 7 5.3910 2.1838 -3.2575 9 14 3.0124 3.4355 -3.9291 10 1 3.1158 4.8558 -3.5080 11 1 3.4053 3.3124 -5.3559 12 1 1.6127 2.9695 -3.7591 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.4469 2.1503 3.5850 17 6 1.8758 1.6949 4.8595 18 6 2.0325 2.7953 5.9108 19 6 1.2996 2.3986 7.1664 20 8 0.7118 1.3441 7.2151 21 8 1.2998 3.2167 8.2305 22 6 3.9141 2.1894 3.6496 23 6 4.3659 3.5348 4.2259 24 6 5.8907 3.5362 4.3629 25 8 6.2939 2.4458 5.1939 26 6 5.9400 1.1596 4.6814 27 6 4.4172 1.0627 4.5572 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.5815 1.6878 -2.0284 34 1 2.0953 3.1412 -1.1383 35 1 5.7170 2.5744 -4.0833 36 1 2.5380 0.3634 2.4840 37 1 0.9246 1.1092 2.5789 38 1 0.8179 1.4700 4.7237 39 1 2.3983 0.7979 5.1917 40 1 3.0898 2.9348 6.1359 41 1 1.6170 3.7268 5.5264 42 1 0.8156 2.9193 9.0129 43 1 4.3279 2.0639 2.6490 44 1 4.0596 4.3390 3.5569 45 1 3.9119 3.6822 5.2059 46 1 6.2144 4.4748 4.8124 47 1 6.3443 3.4293 3.3775 48 1 6.2992 0.3863 5.3604 49 1 6.3943 1.0215 3.7002 50 1 3.9643 1.1602 5.5439 51 1 4.1475 0.0991 4.1252 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829692772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:08 Heat of formation + Delta-G solvation = -176.964132 kcal Electronic energy + Delta-G solvation = -32250.476351 eV Core-core repulsion = 27956.695778 eV Total energy + Delta-G solvation = -4293.780572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.71709 -40.96830 -40.24565 -38.17734 -37.07525 -36.82811 -34.87167 -33.14218 -32.89052 -32.11379 -31.76810 -29.88681 -27.73934 -26.13655 -24.70138 -24.52587 -24.20909 -23.16243 -21.69161 -20.87005 -19.79909 -19.10126 -19.00144 -18.00042 -17.84443 -17.71873 -17.16770 -17.03836 -16.88174 -16.44900 -16.15151 -15.87638 -15.58417 -15.39738 -15.13923 -14.70236 -14.64975 -14.41551 -14.32689 -14.04629 -13.88510 -13.68650 -13.43393 -13.35481 -13.20112 -13.08994 -12.88054 -12.69246 -12.54140 -12.49983 -12.37208 -12.16581 -12.03574 -11.97320 -11.79823 -11.74117 -11.69528 -11.53150 -11.10822 -10.83343 -10.60666 -10.53211 -9.35997 -9.26727 -8.34406 -6.38691 1.22714 1.31628 1.35501 1.43734 1.85182 1.95774 2.30114 2.35223 2.87778 2.97862 3.00505 3.60936 3.70325 3.73798 3.84087 3.98098 4.01660 4.07710 4.16970 4.20886 4.24527 4.34848 4.41802 4.46374 4.47137 4.52861 4.61830 4.64545 4.69473 4.74540 4.77661 4.80905 4.83769 4.90892 4.94893 5.00850 5.02214 5.03588 5.20731 5.32175 5.39072 5.47538 5.64687 5.67944 5.87705 6.03102 6.19206 6.25525 6.62261 6.78271 7.02696 7.22777 7.52104 8.82503 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.003375 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.781390 B = 8295.474815 C = 9528.532334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.229 3.771 5 C -0.531 4.531 6 H 0.028 0.972 7 C 0.012 3.988 8 N -0.946 5.946 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.240 1.240 13 C 0.498 3.502 14 O -0.570 6.570 15 C 0.050 3.950 16 N -0.524 5.524 17 C 0.061 3.939 18 C -0.118 4.118 19 C 0.492 3.508 20 O -0.549 6.549 21 O -0.513 6.513 22 C 0.089 3.911 23 C -0.145 4.145 24 C 0.059 3.941 25 O -0.391 6.391 26 C 0.060 3.940 27 C -0.181 4.181 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.016 0.984 35 H 0.268 0.732 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.428 0.572 43 H 0.043 0.957 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.115 0.885 47 H 0.031 0.969 48 H 0.116 0.884 49 H 0.037 0.963 50 H 0.095 0.905 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.436 -3.590 21.433 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.337 5.337 4 C 0.106 3.894 5 C -0.570 4.570 6 H 0.046 0.954 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.768 3.232 10 H -0.202 1.202 11 H -0.201 1.201 12 H -0.163 1.163 13 C 0.286 3.714 14 O -0.449 6.449 15 C -0.080 4.080 16 N -0.247 5.247 17 C -0.066 4.066 18 C -0.156 4.156 19 C 0.335 3.665 20 O -0.440 6.440 21 O -0.327 6.327 22 C -0.020 4.020 23 C -0.182 4.182 24 C -0.018 4.018 25 O -0.310 6.310 26 C -0.017 4.017 27 C -0.219 4.219 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.146 0.854 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.290 0.710 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.118 0.882 46 H 0.133 0.867 47 H 0.050 0.950 48 H 0.134 0.866 49 H 0.055 0.945 50 H 0.113 0.887 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.151 -2.616 21.036 23.088 hybrid contribution 0.091 -0.476 -0.892 1.015 sum -9.059 -3.092 20.144 22.303 Atomic orbital electron populations 1.22154 0.93997 1.03554 1.02108 1.21748 0.95607 0.81324 1.03690 1.48066 1.64739 1.15065 1.05804 1.19221 0.94594 0.92917 0.82640 1.21545 0.97052 1.31866 1.06523 0.95410 1.25816 0.96635 0.97198 0.98961 1.70044 1.17374 1.46668 1.24498 0.85748 0.80501 0.79082 0.77824 1.20232 1.20087 1.16275 1.21123 0.77319 0.86827 0.86100 1.90633 1.46493 1.20069 1.87686 1.22014 1.03826 0.94358 0.87818 1.61591 1.07918 1.52403 1.02759 1.22035 1.01124 0.96008 0.87415 1.21670 1.02559 1.02270 0.89074 1.23455 0.77064 0.80785 0.85159 1.90719 1.43772 1.25780 1.83711 1.84510 1.71493 1.50809 1.25884 1.21639 0.86951 0.95601 0.97777 1.22438 0.95915 0.97158 1.02726 1.22675 0.93922 0.90798 0.94423 1.87879 1.80018 1.14717 1.48401 1.22639 0.93829 0.85705 0.99547 1.22900 0.97546 0.99604 1.01884 0.93569 0.88889 0.91914 0.91197 0.88881 0.93785 0.96572 0.92338 0.90498 0.85413 0.89416 0.91685 0.85936 0.86085 0.71017 0.93879 0.91666 0.88185 0.86683 0.95017 0.86587 0.94473 0.88675 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 10.24 71.98 0.74 -2.68 16 2 C 0.10 2.80 5.96 86.38 0.51 3.31 16 3 N -0.60 -23.85 2.46 -826.14 -2.03 -25.88 16 4 C 0.23 11.09 4.23 85.63 0.36 11.45 16 5 C -0.53 -31.13 9.94 25.60 0.25 -30.88 16 6 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 7 C 0.01 0.70 5.47 84.66 0.46 1.16 16 8 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 9 Si 0.95 44.67 27.47 68.60 1.88 46.56 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 13 C 0.50 19.42 7.01 87.66 0.61 20.04 16 14 O -0.57 -27.71 15.22 -3.04 -0.05 -27.75 16 15 C 0.05 1.33 4.12 85.56 0.35 1.68 16 16 N -0.52 -13.29 3.95 -874.80 -3.46 -16.74 16 17 C 0.06 1.16 3.85 86.30 0.33 1.49 16 18 C -0.12 -1.94 4.56 29.85 0.14 -1.81 16 19 C 0.49 8.23 8.33 71.24 0.59 8.82 16 20 O -0.55 -12.25 16.64 21.97 0.37 -11.88 16 21 O -0.51 -6.20 13.42 -51.36 -0.69 -6.89 16 22 C 0.09 2.41 1.62 45.03 0.07 2.48 16 23 C -0.14 -3.67 5.39 30.69 0.17 -3.51 16 24 C 0.06 1.47 6.84 72.01 0.49 1.96 16 25 O -0.39 -9.72 10.77 -148.98 -1.60 -11.32 16 26 C 0.06 1.32 6.84 72.01 0.49 1.81 16 27 C -0.18 -3.75 4.15 30.68 0.13 -3.63 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.06 1.22 7.41 -2.39 -0.02 1.20 16 31 H 0.07 2.17 8.07 -2.38 -0.02 2.15 16 32 H 0.09 2.10 6.27 -2.39 -0.01 2.09 16 33 H 0.04 1.99 7.13 -2.38 -0.02 1.97 16 34 H 0.02 0.85 6.85 -2.39 -0.02 0.83 16 35 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.08 1.79 6.62 -2.38 -0.02 1.78 16 37 H 0.13 2.63 6.98 -2.39 -0.02 2.62 16 38 H 0.09 1.63 7.46 -2.38 -0.02 1.61 16 39 H 0.07 1.16 5.46 -2.39 -0.01 1.14 16 40 H 0.12 1.91 4.50 -2.39 -0.01 1.90 16 41 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.43 1.57 9.10 -74.06 -0.67 0.89 16 43 H 0.04 1.58 6.83 -2.38 -0.02 1.56 16 44 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.10 2.03 4.31 -2.39 -0.01 2.02 16 46 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.09 1.70 5.10 -2.38 -0.01 1.69 16 51 H 0.08 1.54 7.79 -2.39 -0.02 1.52 16 Total: -1.00 -81.86 394.55 0.66 -81.20 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.22 Total: 20.50 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 5.71 Total: 11.72 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -5.19 Total: -102.13 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -1.97 Total: -57.85 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -81.86 0.66 -81.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.761 kcal (2) G-P(sol) polarization free energy of solvation -81.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds