Wall clock time and date at job start Wed Apr 1 2020 01:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46992 * 2 1 4 4 C 1.46494 * 120.00036 * 270.00070 * 3 2 1 5 5 C 1.50703 * 109.47127 * 269.99994 * 4 3 2 6 6 O 1.21276 * 119.99975 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00270 * 179.97438 * 5 4 3 8 8 C 1.47422 * 125.64682 * 0.02723 * 7 5 4 9 9 C 1.54903 * 104.83269 * 204.08944 * 8 7 5 10 10 C 1.55156 * 101.58295 * 322.98720 * 9 8 7 11 11 O 1.42903 * 110.72392 * 276.96394 * 10 9 8 12 12 C 1.50701 * 110.72480 * 153.86299 * 10 9 8 13 13 H 1.08001 * 120.00265 * 241.46001 * 12 10 9 14 14 C 1.37880 * 119.99835 * 61.45552 * 12 10 9 15 15 N 1.31512 * 119.99829 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00020 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47401 * 90.00103 * 16 14 12 18 18 H 1.48501 * 109.47142 * 210.00044 * 16 14 12 19 19 H 1.48498 * 109.47521 * 329.99969 * 16 14 12 20 20 C 1.47020 * 125.65136 * 179.71214 * 7 5 4 21 21 C 1.34780 * 119.99797 * 89.99908 * 3 2 1 22 22 O 1.21513 * 119.99577 * 180.02562 * 21 3 2 23 23 O 1.34628 * 120.00286 * 359.97438 * 21 3 2 24 24 C 1.45202 * 117.00407 * 179.97438 * 23 21 3 25 25 C 1.53006 * 109.46867 * 59.99955 * 24 23 21 26 26 C 1.52999 * 109.47019 * 300.00782 * 24 23 21 27 27 C 1.52997 * 109.47464 * 180.02562 * 24 23 21 28 28 H 1.08999 * 109.47475 * 300.00026 * 1 2 3 29 29 H 1.08997 * 109.47300 * 60.00350 * 1 2 3 30 30 H 1.09001 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47475 * 239.99974 * 2 1 3 32 32 H 1.08997 * 109.47300 * 119.99649 * 2 1 3 33 33 H 1.09001 * 109.47099 * 29.99622 * 4 3 2 34 34 H 1.08994 * 109.47411 * 149.99958 * 4 3 2 35 35 H 1.08999 * 110.37068 * 322.92743 * 8 7 5 36 36 H 1.09001 * 110.36991 * 85.25238 * 8 7 5 37 37 H 1.08999 * 111.00984 * 81.06419 * 9 8 7 38 38 H 1.09001 * 111.00863 * 204.87814 * 9 8 7 39 39 H 0.96698 * 113.99194 * 298.54162 * 11 10 9 40 40 H 0.97001 * 119.99979 * 180.02562 * 15 14 12 41 41 H 1.09000 * 109.88379 * 298.39913 * 20 7 5 42 42 H 1.09001 * 109.87743 * 59.56251 * 20 7 5 43 43 H 1.09001 * 109.46801 * 300.00397 * 25 24 23 44 44 H 1.09001 * 109.46998 * 59.99993 * 25 24 23 45 45 H 1.09000 * 109.47050 * 180.02562 * 25 24 23 46 46 H 1.09000 * 109.47160 * 179.97438 * 26 24 23 47 47 H 1.09002 * 109.46719 * 299.99410 * 26 24 23 48 48 H 1.08993 * 109.47839 * 59.99251 * 26 24 23 49 49 H 1.09001 * 109.47375 * 300.00043 * 27 24 23 50 50 H 1.09002 * 109.46777 * 60.00599 * 27 24 23 51 51 H 1.09000 * 109.47140 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 8 4.4236 1.1567 -1.0210 7 7 4.1386 2.3772 -2.8515 8 6 3.3535 3.2188 -3.7727 9 6 4.0531 3.0631 -5.1459 10 6 5.5461 2.9967 -4.7292 11 8 6.0779 4.3099 -4.5426 12 6 6.3520 2.2376 -5.7516 13 1 6.8657 1.3305 -5.4692 14 6 6.4333 2.7009 -7.0476 15 7 5.8080 3.8057 -7.3914 16 14 7.4315 1.7596 -8.3152 17 1 6.5616 0.7627 -8.9895 18 1 7.9718 2.7072 -9.3229 19 1 8.5549 1.0605 -7.6409 20 6 5.4994 2.2326 -3.3891 21 6 2.2429 2.0166 1.1673 22 8 2.6474 3.1624 1.1672 23 8 2.0180 1.3821 2.3332 24 6 2.2821 2.1275 3.5510 25 6 1.3994 3.3767 3.5859 26 6 3.7544 2.5423 3.5858 27 6 1.9714 1.2488 4.7643 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5816 1.6877 -2.0283 34 1 2.0954 3.1410 -1.1384 35 1 2.3248 2.8627 -3.8285 36 1 3.3784 4.2597 -3.4501 37 1 3.7440 2.1419 -5.6397 38 1 3.8625 3.9276 -5.7818 39 1 6.0589 4.8586 -5.3386 40 1 5.8649 4.1315 -8.3033 41 1 6.2207 2.6587 -2.6918 42 1 5.7213 1.1788 -3.5574 43 1 1.6213 4.0025 2.7214 44 1 0.3505 3.0813 3.5609 45 1 1.5980 3.9365 4.4998 46 1 3.9526 3.1022 4.4998 47 1 4.3832 1.6523 3.5610 48 1 3.9762 3.1681 2.7215 49 1 0.9226 0.9530 4.7397 50 1 2.6006 0.3591 4.7393 51 1 2.1692 1.8085 5.6785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015208.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:48 Heat of formation + Delta-G solvation = -160.905618 kcal Electronic energy + Delta-G solvation = -31896.635789 eV Core-core repulsion = 27603.551566 eV Total energy + Delta-G solvation = -4293.084223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 3.46 seconds Orbital eigenvalues (eV) -40.93212 -39.52827 -37.91492 -36.91840 -35.81716 -34.32591 -33.97933 -32.23219 -31.22100 -29.86198 -28.63074 -27.57656 -27.48885 -27.47129 -24.94489 -23.72280 -22.56708 -21.72205 -19.93189 -19.38657 -18.74953 -17.83459 -17.34214 -16.93946 -16.74832 -15.91785 -15.71058 -15.36059 -14.96844 -14.71192 -14.56833 -14.35861 -14.19178 -13.90563 -13.77430 -13.60327 -13.00831 -12.94001 -12.69870 -12.54237 -12.32107 -12.19663 -12.08190 -12.02347 -11.98611 -11.78576 -11.53287 -11.48699 -11.40116 -11.37612 -11.35608 -11.22564 -10.90273 -10.65345 -10.50337 -10.44151 -10.13499 -10.01795 -9.77075 -9.39791 -8.76388 -8.65353 -8.24098 -8.02934 -6.30570 -4.37973 2.01540 2.83560 3.01521 3.18436 3.26302 3.30719 3.50062 3.79288 4.25491 4.57814 4.61737 4.76483 4.80261 4.84173 4.95598 4.98195 5.10615 5.25379 5.28683 5.31108 5.38847 5.49593 5.51486 5.52164 5.55440 5.61309 5.68768 5.72183 5.74430 5.82010 5.88184 5.99808 6.00698 6.11541 6.17066 6.24577 6.34002 6.40524 6.45240 6.67638 6.88412 6.94786 7.27189 7.29453 7.33126 7.71342 8.00601 8.07209 8.33267 8.58847 8.65092 9.28898 9.38232 10.76981 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.002477 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.810003 B =11299.887718 C =11651.638529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.578 5.578 4 C 0.118 3.882 5 C 0.505 3.495 6 O -0.545 6.545 7 N -0.606 5.606 8 C 0.092 3.908 9 C -0.134 4.134 10 C 0.247 3.753 11 O -0.585 6.585 12 C -0.534 4.534 13 H 0.064 0.936 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.124 3.876 21 C 0.660 3.340 22 O -0.565 6.565 23 O -0.360 6.360 24 C 0.135 3.865 25 C -0.182 4.182 26 C -0.184 4.184 27 C -0.139 4.139 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.382 0.618 40 H 0.268 0.732 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.065 0.935 50 H 0.066 0.934 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.873 -3.963 16.171 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.316 5.316 4 C -0.008 4.008 5 C 0.291 3.709 6 O -0.423 6.423 7 N -0.340 5.340 8 C -0.031 4.031 9 C -0.173 4.173 10 C 0.206 3.794 11 O -0.394 6.394 12 C -0.572 4.572 13 H 0.082 0.918 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.730 3.270 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.003 3.997 21 C 0.416 3.584 22 O -0.453 6.453 23 O -0.275 6.275 24 C 0.098 3.902 25 C -0.239 4.239 26 C -0.241 4.241 27 C -0.196 4.196 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.232 0.768 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.107 0.893 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.324 -4.103 17.162 22.111 hybrid contribution 0.440 -0.196 -1.447 1.525 sum -12.884 -4.299 15.714 20.771 Atomic orbital electron populations 1.22194 0.95684 1.02378 1.02414 1.21554 0.94049 0.81322 1.04071 1.46272 1.67862 1.14943 1.02566 1.21270 0.94690 1.00300 0.84490 1.20603 0.89949 0.80168 0.80157 1.90669 1.58263 1.39991 1.53395 1.48642 1.14415 1.49744 1.21206 1.22566 0.94414 0.94315 0.91779 1.23296 0.98173 1.02931 0.92861 1.19471 0.89434 0.81588 0.88864 1.86150 1.85845 1.26780 1.40584 1.21507 1.31695 1.09998 0.94014 0.91808 1.24983 0.94773 0.94926 0.98347 1.69693 1.42599 1.21486 1.19746 0.86413 0.80356 0.79553 0.80648 1.20493 1.21009 1.19702 1.22058 0.81621 1.00314 0.95742 1.17857 0.76427 0.83045 0.81119 1.90902 1.50351 1.17364 1.86725 1.86282 1.81597 1.45944 1.13643 1.22055 0.96002 0.91423 0.80698 1.22511 0.99171 0.97744 1.04516 1.22509 0.94312 1.02877 1.04406 1.21842 1.02751 1.00047 0.94965 0.92299 0.92328 0.91295 0.90037 0.89637 0.87146 0.86750 0.92128 0.91677 0.91408 0.89287 0.76790 0.92211 0.92181 0.91045 0.89324 0.92327 0.91254 0.91320 0.92089 0.89257 0.91606 0.91472 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.11 1.23 6.13 -4.04 -0.02 1.21 16 3 N -0.58 -8.06 1.96 -180.87 -0.35 -8.41 16 4 C 0.12 1.66 4.89 -5.20 -0.03 1.64 16 5 C 0.50 9.49 7.92 -10.98 -0.09 9.40 16 6 O -0.55 -12.12 16.76 5.56 0.09 -12.03 16 7 N -0.61 -11.88 3.33 -170.52 -0.57 -12.45 16 8 C 0.09 1.60 6.68 -2.53 -0.02 1.58 16 9 C -0.13 -2.79 5.47 -24.59 -0.13 -2.93 16 10 C 0.25 5.89 0.85 -89.93 -0.08 5.81 16 11 O -0.58 -14.65 13.07 -35.23 -0.46 -15.11 16 12 C -0.53 -13.83 8.22 -34.44 -0.28 -14.11 16 13 H 0.06 1.67 7.58 -52.49 -0.40 1.27 16 14 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 15 N -0.90 -22.64 10.67 55.43 0.59 -22.05 16 16 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 20 C 0.12 2.82 6.23 -3.06 -0.02 2.80 16 21 C 0.66 10.21 7.70 54.06 0.42 10.63 16 22 O -0.56 -9.99 11.46 -19.28 -0.22 -10.21 16 23 O -0.36 -4.83 8.71 -40.29 -0.35 -5.18 16 24 C 0.13 1.51 1.13 -90.62 -0.10 1.41 16 25 C -0.18 -1.90 8.37 37.16 0.31 -1.59 16 26 C -0.18 -2.23 8.37 37.16 0.31 -1.92 16 27 C -0.14 -1.10 8.85 37.16 0.33 -0.77 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.09 0.95 7.37 -51.93 -0.38 0.56 16 33 H 0.11 1.17 7.78 -51.93 -0.40 0.77 16 34 H 0.11 1.60 7.42 -51.93 -0.39 1.21 16 35 H 0.06 0.83 7.48 -51.93 -0.39 0.44 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 38 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16 39 H 0.38 9.50 7.46 45.56 0.34 9.84 16 40 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 41 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 42 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 43 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 1.38 5.88 -51.93 -0.31 1.07 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 407.24 15.07 6.14 6.14 Total: -1.00 -30.97 407.24 -7.33 -38.30 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -8.06 Total: 12.05 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 0.88 Total: 13.89 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.33 Total: -42.91 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.94 Total: -42.53 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.97 -7.33 -38.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015208.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.607 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds