Wall clock time and date at job start Wed Apr 1 2020 03:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 114.00403 * 2 1 4 4 C 1.52995 * 109.47364 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47023 * 64.99831 * 4 3 2 6 6 C 1.37096 * 119.99879 * 90.00533 * 5 4 3 7 7 H 1.08006 * 119.99773 * 215.45207 * 6 5 4 8 8 C 1.38943 * 120.00500 * 35.45330 * 6 5 4 9 9 N 1.31411 * 120.00048 * 21.11226 * 8 6 5 10 10 Si 1.86798 * 120.00196 * 201.12025 * 8 6 5 11 11 H 1.48498 * 109.47302 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47228 * 119.99556 * 10 8 6 13 13 H 1.48499 * 109.47003 * 239.99614 * 10 8 6 14 14 C 1.34781 * 120.00010 * 269.99659 * 5 4 3 15 15 O 1.21297 * 119.99845 * 4.76719 * 14 5 4 16 16 C 1.50698 * 119.99966 * 184.75741 * 14 5 4 17 17 H 1.08997 * 112.84803 * 334.73625 * 16 14 5 18 18 C 1.53780 * 113.60864 * 106.04048 * 16 14 5 19 19 C 1.53778 * 87.08298 * 89.11805 * 18 16 14 20 20 H 1.08999 * 113.61506 * 270.88259 * 19 18 16 21 21 N 1.46498 * 113.69487 * 139.98868 * 19 18 16 22 22 C 1.34779 * 120.00274 * 107.46414 * 21 19 18 23 23 O 1.21512 * 119.99788 * 0.02562 * 22 21 19 24 24 O 1.34634 * 120.00197 * 180.02562 * 22 21 19 25 25 C 1.45203 * 116.99776 * 180.02562 * 24 22 21 26 26 C 1.52996 * 109.47132 * 60.00222 * 25 24 22 27 27 C 1.52996 * 109.46894 * 180.02562 * 25 24 22 28 28 C 1.52998 * 109.47230 * 299.99952 * 25 24 22 29 29 C 1.53783 * 113.61446 * 203.53900 * 16 14 5 30 30 H 1.08993 * 109.47196 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46653 * 59.99640 * 1 2 3 32 32 H 1.09000 * 109.46906 * 300.00178 * 1 2 3 33 33 H 1.09000 * 109.46772 * 300.00023 * 3 2 1 34 34 H 1.09000 * 109.47054 * 59.99455 * 3 2 1 35 35 H 1.09000 * 109.47141 * 184.99640 * 4 3 2 36 36 H 1.09001 * 109.47232 * 304.99957 * 4 3 2 37 37 H 0.96999 * 120.00176 * 185.14797 * 9 8 6 38 38 H 1.09001 * 113.61194 * 203.66385 * 18 16 14 39 39 H 1.09000 * 113.61888 * 334.56648 * 18 16 14 40 40 H 0.97007 * 119.99852 * 287.46599 * 21 19 18 41 41 H 1.09001 * 109.47291 * 59.99515 * 26 25 24 42 42 H 1.08999 * 109.46895 * 179.97438 * 26 25 24 43 43 H 1.09000 * 109.47091 * 299.99701 * 26 25 24 44 44 H 1.09003 * 109.47286 * 59.99621 * 27 25 24 45 45 H 1.08999 * 109.47148 * 179.97438 * 27 25 24 46 46 H 1.09004 * 109.47561 * 300.00139 * 27 25 24 47 47 H 1.09000 * 109.46847 * 59.99745 * 28 25 24 48 48 H 1.08997 * 109.47677 * 180.02562 * 28 25 24 49 49 H 1.09005 * 109.47199 * 300.00666 * 28 25 24 50 50 H 1.08997 * 113.61502 * 25.43222 * 29 16 14 51 51 H 1.08995 * 113.61609 * 156.34035 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.2666 1.3468 -2.3402 7 1 4.0361 0.9957 -3.3353 8 6 4.8578 2.5915 -2.1623 9 7 5.5091 2.8570 -1.0523 10 14 4.7266 3.8878 -3.5009 11 1 3.9477 3.3438 -4.6422 12 1 4.0408 5.0893 -2.9611 13 1 6.0874 4.2607 -3.9639 14 6 4.0949 -0.7757 -1.3355 15 8 3.7558 -1.4735 -0.4031 16 6 4.6493 -1.4070 -2.5866 17 1 4.5094 -0.7864 -3.4716 18 6 6.0833 -1.9383 -2.4248 19 6 5.4559 -3.2662 -1.9689 20 1 5.2754 -3.3180 -0.8953 21 7 6.1437 -4.4511 -2.4878 22 6 6.8953 -5.2086 -1.6646 23 8 7.0021 -4.9091 -0.4918 24 8 7.5278 -6.2973 -2.1415 25 6 8.3192 -7.0662 -1.1977 26 6 7.4172 -7.5753 -0.0716 27 6 8.9576 -8.2557 -1.9176 28 6 9.4171 -6.1776 -0.6096 29 6 4.2139 -2.8686 -2.7840 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 0.5139 0.8900 33 1 1.6888 1.8463 -0.8900 34 1 1.6887 1.8464 0.8899 35 1 3.9787 2.1764 0.0889 36 1 3.8516 0.5681 0.8409 37 1 5.8575 3.7486 -0.8957 38 1 6.6296 -2.0137 -3.3651 39 1 6.6509 -1.4326 -1.6437 40 1 6.0582 -4.6905 -3.4240 41 1 6.6350 -8.2083 -0.4906 42 1 8.0113 -8.1529 0.6366 43 1 6.9628 -6.7276 0.4412 44 1 9.6002 -7.8927 -2.7198 45 1 9.5521 -8.8327 -1.2093 46 1 8.1758 -8.8890 -2.3370 47 1 8.9625 -5.3299 -0.0969 48 1 10.0114 -6.7549 0.0985 49 1 10.0596 -5.8149 -1.4120 50 1 3.2723 -3.1139 -2.2927 51 1 4.2492 -3.1983 -3.8223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854903422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:58 Heat of formation + Delta-G solvation = -134.868131 kcal Electronic energy + Delta-G solvation = -31530.660579 eV Core-core repulsion = 27238.705426 eV Total energy + Delta-G solvation = -4291.955153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.68784 -39.57925 -37.78206 -36.91662 -36.13659 -34.61024 -34.18521 -32.77346 -31.55595 -29.31947 -27.51152 -27.42195 -25.95332 -25.33848 -25.21944 -24.67432 -22.66287 -21.44858 -20.25391 -19.79483 -18.71354 -17.93899 -16.84975 -16.44500 -16.15648 -15.98468 -15.62359 -15.30641 -15.08021 -14.72122 -14.42470 -14.40768 -14.31431 -14.20157 -13.59756 -13.45563 -13.14688 -12.62332 -12.53301 -12.31707 -12.09989 -12.06194 -11.95976 -11.91664 -11.78773 -11.57643 -11.46489 -11.38754 -11.29800 -11.14919 -11.06806 -10.88833 -10.49556 -10.41113 -10.35141 -10.23547 -10.02050 -9.89497 -9.81005 -9.12252 -8.94173 -8.79071 -8.23977 -7.49444 -6.35304 -4.06708 2.33876 3.04218 3.08778 3.20850 3.23678 3.92965 4.09530 4.29653 4.56824 4.64610 4.67327 4.68073 4.83150 4.91749 5.04982 5.17249 5.34382 5.43604 5.51863 5.58578 5.58728 5.60304 5.66155 5.71011 5.76375 5.79772 5.87073 6.00382 6.01424 6.07341 6.12642 6.16253 6.24495 6.26178 6.30527 6.36788 6.44767 6.46507 6.57534 6.60330 6.71301 6.85968 7.02794 7.24261 7.44061 7.67364 7.92281 7.96107 8.39310 8.60527 9.10889 9.58245 10.03898 10.63842 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013655 B = 0.002790 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.081756 B =10033.817438 C =11161.300915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.050 3.950 4 C 0.115 3.885 5 N -0.438 5.438 6 C -0.329 4.329 7 H 0.089 0.911 8 C 0.039 3.961 9 N -0.861 5.861 10 Si 0.908 3.092 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.282 1.282 14 C 0.494 3.506 15 O -0.579 6.579 16 C -0.111 4.111 17 H 0.101 0.899 18 C -0.127 4.127 19 C 0.141 3.859 20 H 0.130 0.870 21 N -0.698 5.698 22 C 0.646 3.354 23 O -0.564 6.564 24 O -0.370 6.370 25 C 0.136 3.864 26 C -0.184 4.184 27 C -0.139 4.139 28 C -0.184 4.184 29 C -0.127 4.127 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.121 0.879 36 H 0.062 0.938 37 H 0.268 0.732 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.401 0.599 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.068 0.932 49 H 0.058 0.942 50 H 0.081 0.919 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 -12.977 -3.825 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.028 4.028 4 C -0.009 4.009 5 N -0.157 5.157 6 C -0.457 4.457 7 H 0.107 0.893 8 C -0.166 4.166 9 N -0.499 5.499 10 Si 0.734 3.266 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.208 1.208 14 C 0.282 3.718 15 O -0.463 6.463 16 C -0.133 4.133 17 H 0.119 0.881 18 C -0.166 4.166 19 C 0.038 3.962 20 H 0.148 0.852 21 N -0.356 5.356 22 C 0.399 3.601 23 O -0.453 6.453 24 O -0.286 6.286 25 C 0.099 3.901 26 C -0.241 4.241 27 C -0.197 4.197 28 C -0.241 4.241 29 C -0.166 4.166 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.138 0.862 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.235 0.765 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.109 0.891 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.100 0.900 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.914 -13.246 -2.668 13.647 hybrid contribution -0.279 1.123 -1.138 1.623 sum 1.635 -12.124 -3.806 12.812 Atomic orbital electron populations 1.22617 0.83654 1.01555 0.98728 1.88195 1.17211 1.27838 1.95030 1.23103 0.96628 0.84416 0.98665 1.21522 0.89382 1.02220 0.87793 1.43251 1.57372 1.03726 1.11334 1.19472 1.38671 1.00086 0.87440 0.89296 1.25298 0.93895 0.99724 0.97669 1.69946 1.31582 1.21498 1.26847 0.86184 0.78121 0.80939 0.81321 1.19264 1.20630 1.20780 1.19743 0.80960 0.83227 0.87877 1.90561 1.53443 1.62184 1.40106 1.22020 0.96569 0.95055 0.99695 0.88131 1.23231 0.96108 0.95383 1.01884 1.22912 0.91539 0.80668 1.01039 0.85184 1.45022 1.50456 1.27899 1.12201 1.18218 0.78309 0.79120 0.84482 1.90918 1.65780 1.72837 1.15724 1.86280 1.61171 1.37867 1.43256 1.22000 0.89929 0.90104 0.88047 1.22519 1.00050 1.03144 0.98394 1.21848 1.00829 0.95894 1.01087 1.22521 0.98066 1.01849 1.01706 1.23231 0.98498 0.95469 0.99406 0.90642 0.95065 0.95258 0.93565 0.94518 0.86209 0.91993 0.92183 0.89857 0.90616 0.76502 0.92305 0.91352 0.89126 0.91586 0.90327 0.91608 0.89111 0.91354 0.92264 0.89999 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.88 9.29 -47.99 -0.45 -8.32 16 3 C 0.05 1.03 6.28 37.16 0.23 1.27 16 4 C 0.11 2.74 5.45 -4.04 -0.02 2.71 16 5 N -0.44 -10.82 2.52 -114.81 -0.29 -11.11 16 6 C -0.33 -8.04 8.59 -14.94 -0.13 -8.17 16 7 H 0.09 2.09 6.49 -52.48 -0.34 1.75 16 8 C 0.04 0.95 4.99 -17.47 -0.09 0.86 16 9 N -0.86 -22.05 11.29 55.50 0.63 -21.43 16 10 Si 0.91 18.82 29.61 -169.99 -5.03 13.79 16 11 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 14 C 0.49 11.82 6.64 -10.98 -0.07 11.74 16 15 O -0.58 -15.12 13.82 -7.21 -0.10 -15.22 16 16 C -0.11 -2.16 3.76 -90.96 -0.34 -2.51 16 17 H 0.10 1.91 6.26 -51.93 -0.33 1.58 16 18 C -0.13 -2.27 7.46 -25.92 -0.19 -2.46 16 19 C 0.14 2.43 3.83 -67.12 -0.26 2.17 16 20 H 0.13 2.76 6.63 -51.93 -0.34 2.41 16 21 N -0.70 -10.14 5.36 -57.93 -0.31 -10.45 16 22 C 0.65 10.37 8.06 54.06 0.44 10.80 16 23 O -0.56 -10.70 11.48 -19.28 -0.22 -10.92 16 24 O -0.37 -5.10 9.94 -40.31 -0.40 -5.50 16 25 C 0.14 1.58 1.13 -90.63 -0.10 1.48 16 26 C -0.18 -2.13 8.37 37.16 0.31 -1.82 16 27 C -0.14 -1.16 8.85 37.16 0.33 -0.83 16 28 C -0.18 -2.17 8.37 37.16 0.31 -1.86 16 29 C -0.13 -2.06 7.18 -25.91 -0.19 -2.24 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.12 2.96 5.35 -51.93 -0.28 2.68 16 36 H 0.06 1.56 7.49 -51.93 -0.39 1.17 16 37 H 0.27 6.47 8.32 -40.82 -0.34 6.13 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 40 H 0.40 4.58 8.84 -40.82 -0.36 4.22 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 1.35 5.88 -51.93 -0.31 1.04 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.08 1.45 7.85 -51.93 -0.41 1.04 16 51 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -30.65 405.64 -7.25 -37.90 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -8.53 Total: 12.37 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 1.34 Total: 12.77 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.03 Total: -42.99 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -1.17 Total: -39.97 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.65 -7.25 -37.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854903422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.971 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds