Wall clock time and date at job start Wed Apr 1 2020 03:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 114.00403 * 2 1 4 4 C 1.52995 * 109.47364 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47023 * 64.99831 * 4 3 2 6 6 C 1.37096 * 119.99879 * 90.00533 * 5 4 3 7 7 H 1.08006 * 119.99773 * 215.45207 * 6 5 4 8 8 C 1.38943 * 120.00500 * 35.45330 * 6 5 4 9 9 N 1.31411 * 120.00048 * 21.11226 * 8 6 5 10 10 Si 1.86798 * 120.00196 * 201.12025 * 8 6 5 11 11 H 1.48498 * 109.47302 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47228 * 119.99556 * 10 8 6 13 13 H 1.48499 * 109.47003 * 239.99614 * 10 8 6 14 14 C 1.34781 * 120.00010 * 269.99659 * 5 4 3 15 15 O 1.21297 * 119.99845 * 4.76719 * 14 5 4 16 16 C 1.50698 * 119.99966 * 184.75741 * 14 5 4 17 17 H 1.08997 * 112.84803 * 334.73625 * 16 14 5 18 18 C 1.53780 * 113.60864 * 106.04048 * 16 14 5 19 19 C 1.53778 * 87.08298 * 89.11805 * 18 16 14 20 20 H 1.08999 * 113.61506 * 270.88259 * 19 18 16 21 21 N 1.46498 * 113.69487 * 139.98868 * 19 18 16 22 22 C 1.34779 * 120.00274 * 107.46414 * 21 19 18 23 23 O 1.21512 * 119.99788 * 0.02562 * 22 21 19 24 24 O 1.34634 * 120.00197 * 180.02562 * 22 21 19 25 25 C 1.45203 * 116.99776 * 180.02562 * 24 22 21 26 26 C 1.52996 * 109.47132 * 60.00222 * 25 24 22 27 27 C 1.52996 * 109.46894 * 180.02562 * 25 24 22 28 28 C 1.52998 * 109.47230 * 299.99952 * 25 24 22 29 29 C 1.53783 * 113.61446 * 203.53900 * 16 14 5 30 30 H 1.08993 * 109.47196 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46653 * 59.99640 * 1 2 3 32 32 H 1.09000 * 109.46906 * 300.00178 * 1 2 3 33 33 H 1.09000 * 109.46772 * 300.00023 * 3 2 1 34 34 H 1.09000 * 109.47054 * 59.99455 * 3 2 1 35 35 H 1.09000 * 109.47141 * 184.99640 * 4 3 2 36 36 H 1.09001 * 109.47232 * 304.99957 * 4 3 2 37 37 H 0.96999 * 120.00176 * 185.14797 * 9 8 6 38 38 H 1.09001 * 113.61194 * 203.66385 * 18 16 14 39 39 H 1.09000 * 113.61888 * 334.56648 * 18 16 14 40 40 H 0.97007 * 119.99852 * 287.46599 * 21 19 18 41 41 H 1.09001 * 109.47291 * 59.99515 * 26 25 24 42 42 H 1.08999 * 109.46895 * 179.97438 * 26 25 24 43 43 H 1.09000 * 109.47091 * 299.99701 * 26 25 24 44 44 H 1.09003 * 109.47286 * 59.99621 * 27 25 24 45 45 H 1.08999 * 109.47148 * 179.97438 * 27 25 24 46 46 H 1.09004 * 109.47561 * 300.00139 * 27 25 24 47 47 H 1.09000 * 109.46847 * 59.99745 * 28 25 24 48 48 H 1.08997 * 109.47677 * 180.02562 * 28 25 24 49 49 H 1.09005 * 109.47199 * 300.00666 * 28 25 24 50 50 H 1.08997 * 113.61502 * 25.43222 * 29 16 14 51 51 H 1.08995 * 113.61609 * 156.34035 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.2666 1.3468 -2.3402 7 1 4.0361 0.9957 -3.3353 8 6 4.8578 2.5915 -2.1623 9 7 5.5091 2.8570 -1.0523 10 14 4.7266 3.8878 -3.5009 11 1 3.9477 3.3438 -4.6422 12 1 4.0408 5.0893 -2.9611 13 1 6.0874 4.2607 -3.9639 14 6 4.0949 -0.7757 -1.3355 15 8 3.7558 -1.4735 -0.4031 16 6 4.6493 -1.4070 -2.5866 17 1 4.5094 -0.7864 -3.4716 18 6 6.0833 -1.9383 -2.4248 19 6 5.4559 -3.2662 -1.9689 20 1 5.2754 -3.3180 -0.8953 21 7 6.1437 -4.4511 -2.4878 22 6 6.8953 -5.2086 -1.6646 23 8 7.0021 -4.9091 -0.4918 24 8 7.5278 -6.2973 -2.1415 25 6 8.3192 -7.0662 -1.1977 26 6 7.4172 -7.5753 -0.0716 27 6 8.9576 -8.2557 -1.9176 28 6 9.4171 -6.1776 -0.6096 29 6 4.2139 -2.8686 -2.7840 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 0.5139 0.8900 33 1 1.6888 1.8463 -0.8900 34 1 1.6887 1.8464 0.8899 35 1 3.9787 2.1764 0.0889 36 1 3.8516 0.5681 0.8409 37 1 5.8575 3.7486 -0.8957 38 1 6.6296 -2.0137 -3.3651 39 1 6.6509 -1.4326 -1.6437 40 1 6.0582 -4.6905 -3.4240 41 1 6.6350 -8.2083 -0.4906 42 1 8.0113 -8.1529 0.6366 43 1 6.9628 -6.7276 0.4412 44 1 9.6002 -7.8927 -2.7198 45 1 9.5521 -8.8327 -1.2093 46 1 8.1758 -8.8890 -2.3370 47 1 8.9625 -5.3299 -0.0969 48 1 10.0114 -6.7549 0.0985 49 1 10.0596 -5.8149 -1.4120 50 1 3.2723 -3.1139 -2.2927 51 1 4.2492 -3.1983 -3.8223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854903422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:57 Heat of formation + Delta-G solvation = -154.759989 kcal Electronic energy + Delta-G solvation = -31531.523155 eV Core-core repulsion = 27238.705426 eV Total energy + Delta-G solvation = -4292.817728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.93312 -41.13205 -39.32929 -38.36243 -37.58229 -36.46632 -35.31931 -34.00540 -33.44907 -31.04414 -28.35708 -28.26690 -27.38737 -27.01175 -26.64430 -26.34846 -24.10352 -22.89842 -21.76326 -21.09036 -20.39756 -19.17960 -18.29524 -18.17322 -17.51170 -17.17743 -17.15057 -16.96152 -16.54382 -16.26682 -15.96068 -15.91642 -15.65968 -15.36073 -15.08475 -14.83612 -14.49170 -14.07454 -13.66831 -13.51816 -13.39535 -13.31155 -13.25380 -13.14869 -12.99704 -12.87943 -12.84068 -12.78749 -12.64587 -12.60046 -12.45179 -12.27252 -12.22543 -12.00866 -11.88752 -11.57090 -11.40765 -11.36962 -11.08656 -10.97834 -10.50776 -10.12770 -10.07995 -9.40808 -8.21583 -5.99477 1.19335 1.44862 1.52231 1.63900 1.77502 2.12733 2.36191 2.95375 3.01195 3.18527 3.21412 3.57272 3.72221 3.77969 3.82290 3.96897 4.06462 4.08808 4.29626 4.38769 4.46725 4.52232 4.57457 4.60329 4.62143 4.67198 4.72175 4.73626 4.77512 4.79733 4.80749 4.84860 4.90292 4.92631 4.99629 5.03370 5.09733 5.11844 5.22034 5.30090 5.31886 5.36896 5.53937 5.56208 5.64699 6.08569 6.40626 6.49010 6.52303 7.22055 7.41276 7.70943 8.17754 8.78970 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013655 B = 0.002790 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.081756 B =10033.817438 C =11161.300915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.061 3.939 4 C 0.113 3.887 5 N -0.450 5.450 6 C -0.341 4.341 7 H 0.101 0.899 8 C -0.001 4.001 9 N -0.896 5.896 10 Si 0.978 3.022 11 H -0.255 1.255 12 H -0.280 1.280 13 H -0.284 1.284 14 C 0.478 3.522 15 O -0.612 6.612 16 C -0.118 4.118 17 H 0.111 0.889 18 C -0.118 4.118 19 C 0.149 3.851 20 H 0.083 0.917 21 N -0.683 5.683 22 C 0.642 3.358 23 O -0.599 6.599 24 O -0.365 6.365 25 C 0.123 3.877 26 C -0.181 4.181 27 C -0.132 4.132 28 C -0.182 4.182 29 C -0.103 4.103 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.033 0.967 37 H 0.270 0.730 38 H 0.120 0.880 39 H 0.037 0.963 40 H 0.420 0.580 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.072 0.928 47 H 0.053 0.947 48 H 0.092 0.908 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 -14.103 -6.663 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.017 4.017 4 C -0.011 4.011 5 N -0.168 5.168 6 C -0.469 4.469 7 H 0.118 0.882 8 C -0.202 4.202 9 N -0.535 5.535 10 Si 0.802 3.198 11 H -0.179 1.179 12 H -0.206 1.206 13 H -0.210 1.210 14 C 0.267 3.733 15 O -0.498 6.498 16 C -0.140 4.140 17 H 0.129 0.871 18 C -0.157 4.157 19 C 0.045 3.955 20 H 0.101 0.899 21 N -0.343 5.343 22 C 0.396 3.604 23 O -0.490 6.490 24 O -0.279 6.279 25 C 0.087 3.913 26 C -0.238 4.238 27 C -0.189 4.189 28 C -0.239 4.239 29 C -0.142 4.142 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.138 0.862 39 H 0.056 0.944 40 H 0.258 0.742 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.121 0.879 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.111 0.889 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.789 -14.395 -5.546 15.530 hybrid contribution -0.213 1.412 -0.140 1.435 sum 1.576 -12.982 -5.686 14.260 Atomic orbital electron populations 1.22847 0.80875 1.02958 1.00327 1.88139 1.20330 1.28081 1.95330 1.22892 0.94373 0.84641 0.99767 1.21441 0.91873 1.00784 0.87033 1.43517 1.57473 1.04290 1.11544 1.19807 1.38845 1.00462 0.87757 0.88199 1.26126 0.93151 1.01313 0.99647 1.70052 1.32506 1.22015 1.28912 0.85118 0.77830 0.78046 0.78846 1.17892 1.20553 1.21050 1.20569 0.80451 0.83051 0.89180 1.90530 1.54737 1.62777 1.41747 1.21998 0.97573 0.96827 0.97611 0.87077 1.23244 0.95144 0.94985 1.02345 1.22404 0.92613 0.81528 0.98939 0.89871 1.44724 1.49719 1.26854 1.12975 1.18407 0.78312 0.79622 0.84088 1.90925 1.66866 1.73769 1.17476 1.86300 1.60999 1.36925 1.43698 1.22432 0.89608 0.90868 0.88412 1.22479 1.00560 1.02006 0.98781 1.21866 1.01099 0.94372 1.01550 1.22484 0.98274 1.01018 1.02114 1.23189 0.96759 0.92529 1.01700 0.89439 0.93804 0.93181 0.93491 0.92107 0.87316 0.94883 0.92039 0.86180 0.94410 0.74181 0.91655 0.88940 0.92811 0.90986 0.87926 0.90900 0.92830 0.88944 0.91753 0.91617 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.07 16 2 O -0.40 -17.45 9.29 -136.78 -1.27 -18.72 16 3 C 0.06 2.57 6.28 71.98 0.45 3.02 16 4 C 0.11 5.63 5.45 86.38 0.47 6.10 16 5 N -0.45 -22.92 2.52 -635.53 -1.60 -24.52 16 6 C -0.34 -16.75 8.59 84.04 0.72 -16.03 16 7 H 0.10 4.58 6.49 -2.91 -0.02 4.57 16 8 C 0.00 -0.03 4.99 84.92 0.42 0.40 16 9 N -0.90 -46.94 11.29 21.66 0.24 -46.69 16 10 Si 0.98 38.08 29.61 68.60 2.03 40.11 16 11 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 12 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 13 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 14 C 0.48 23.71 6.64 87.66 0.58 24.29 16 15 O -0.61 -33.74 13.82 9.11 0.13 -33.61 16 16 C -0.12 -4.57 3.76 -11.01 -0.04 -4.61 16 17 H 0.11 4.03 6.26 -2.39 -0.01 4.02 16 18 C -0.12 -4.22 7.46 31.12 0.23 -3.99 16 19 C 0.15 5.20 3.83 45.52 0.17 5.37 16 20 H 0.08 3.77 6.63 -2.39 -0.02 3.76 16 21 N -0.68 -19.26 5.36 -567.60 -3.04 -22.30 16 22 C 0.64 20.80 8.06 129.79 1.05 21.84 16 23 O -0.60 -24.04 11.48 19.80 0.23 -23.81 16 24 O -0.36 -9.68 9.94 -55.43 -0.55 -10.23 16 25 C 0.12 2.71 1.13 -10.80 -0.01 2.70 16 26 C -0.18 -4.10 8.37 71.98 0.60 -3.50 16 27 C -0.13 -1.80 8.85 71.98 0.64 -1.16 16 28 C -0.18 -4.18 8.37 71.98 0.60 -3.58 16 29 C -0.10 -3.20 7.18 31.12 0.22 -2.98 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.11 5.63 5.35 -2.39 -0.01 5.62 16 36 H 0.03 1.78 7.49 -2.39 -0.02 1.76 16 37 H 0.27 13.29 8.32 -92.71 -0.77 12.52 16 38 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 39 H 0.04 1.62 8.09 -2.39 -0.02 1.60 16 40 H 0.42 8.48 8.84 -92.70 -0.82 7.67 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.64 5.88 -2.39 -0.01 1.63 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.05 1.66 5.88 -2.39 -0.01 1.65 16 48 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 50 H 0.07 2.29 7.85 -2.39 -0.02 2.28 16 51 H 0.13 2.78 8.12 -2.39 -0.02 2.76 16 Total: -1.00 -71.71 405.64 3.64 -68.07 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: 0.11 Total: 41.77 kcal Atomic # 6 Polarization: 22.58 SS G_CDS: 7.36 Total: 29.94 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -4.40 Total: -93.51 kcal Atomic # 8 Polarization: -84.91 SS G_CDS: -1.47 Total: -86.38 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -71.71 3.64 -68.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854903422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.688 kcal (2) G-P(sol) polarization free energy of solvation -71.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds