Wall clock time and date at job start Wed Apr 1 2020 04:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40420 * 125.99177 * 2 1 4 4 C 1.29748 * 108.07979 * 180.22272 * 3 2 1 5 5 C 1.40814 * 108.28652 * 359.84743 * 4 3 2 6 6 C 1.34255 * 108.02333 * 359.87525 * 5 4 3 7 7 C 1.50705 * 126.20347 * 180.09478 * 6 5 4 8 8 N 1.46890 * 109.47063 * 262.45856 * 7 6 5 9 9 C 1.46900 * 111.00250 * 72.48233 * 8 7 6 10 10 C 1.50698 * 109.46997 * 67.61912 * 9 8 7 11 11 H 1.07999 * 120.00200 * 355.44312 * 10 9 8 12 12 C 1.37886 * 119.99787 * 175.44212 * 10 9 8 13 13 N 1.31507 * 119.99978 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99588 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47492 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46878 * 120.00194 * 14 12 10 17 17 H 1.48502 * 109.47331 * 239.99891 * 14 12 10 18 18 C 1.46898 * 111.00043 * 196.43672 * 8 7 6 19 19 C 1.50700 * 109.47485 * 169.99824 * 18 8 7 20 20 C 1.38671 * 120.41615 * 89.99841 * 19 18 8 21 21 C 1.38630 * 118.42173 * 179.97438 * 20 19 18 22 22 C 1.38227 * 119.16045 * 0.25824 * 21 20 19 23 23 N 1.31858 * 120.76216 * 359.49111 * 22 21 20 24 24 C 1.31884 * 121.72653 * 0.49942 * 23 22 21 25 25 C 1.50892 * 122.56601 * 179.73106 * 5 4 3 26 26 O 1.43464 * 107.71718 * 344.96708 * 25 5 4 27 27 C 1.42916 * 114.62956 * 51.43980 * 26 25 5 28 28 C 1.51035 * 129.49489 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47057 * 270.17618 * 1 2 3 30 30 H 1.09002 * 109.46788 * 30.18023 * 1 2 3 31 31 H 1.09005 * 109.46856 * 150.17558 * 1 2 3 32 32 H 1.08996 * 109.46860 * 142.45787 * 7 6 5 33 33 H 1.08998 * 109.46915 * 22.46055 * 7 6 5 34 34 H 1.09000 * 109.47364 * 187.62233 * 9 8 7 35 35 H 1.09003 * 109.47466 * 307.62101 * 9 8 7 36 36 H 0.97004 * 119.99980 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47173 * 49.99757 * 18 8 7 38 38 H 1.08997 * 109.47075 * 289.99805 * 18 8 7 39 39 H 1.07999 * 120.79157 * 359.95642 * 20 19 18 40 40 H 1.07996 * 120.42189 * 179.97438 * 21 20 19 41 41 H 1.07999 * 119.62471 * 179.74985 * 22 21 20 42 42 H 1.07994 * 119.62138 * 179.74557 * 24 23 22 43 43 H 1.08999 * 109.81072 * 104.51368 * 25 5 4 44 44 H 1.08995 * 109.81139 * 225.41019 * 25 5 4 45 45 H 1.09002 * 109.39457 * 167.42320 * 27 26 25 46 46 H 1.08992 * 109.40025 * 47.69298 * 27 26 25 47 47 H 1.09001 * 109.84869 * 283.56251 * 28 4 3 48 48 H 1.08996 * 109.84925 * 44.55322 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2903 1.1361 0.0000 4 6 3.5249 0.7371 -0.0048 5 6 3.5341 -0.6710 -0.0045 6 6 2.2602 -1.0947 0.0035 7 6 1.7994 -2.5296 0.0087 8 7 1.4689 -2.9427 -1.3617 9 6 2.6849 -3.1117 -2.1683 10 6 3.4692 -4.2910 -1.6536 11 1 3.1403 -4.8130 -0.7672 12 6 4.6069 -4.7037 -2.3143 13 7 5.0078 -4.0678 -3.3934 14 14 5.5788 -6.1660 -1.6766 15 1 4.9226 -6.7027 -0.4574 16 1 5.6248 -7.2224 -2.7193 17 1 6.9613 -5.7357 -1.3467 18 6 0.6625 -4.1706 -1.3613 19 6 0.1382 -4.4277 -2.7506 20 6 0.8714 -5.1895 -3.6479 21 6 0.3498 -5.4004 -4.9148 22 6 -0.8727 -4.8438 -5.2411 23 7 -1.5447 -4.1286 -4.3605 24 6 -1.0794 -3.9078 -3.1463 25 6 4.8110 -1.4749 -0.0153 26 8 5.8805 -0.5906 -0.3793 27 6 5.9468 0.6121 0.3898 28 6 4.7973 1.5507 -0.0064 29 1 -0.3633 0.0032 1.0276 30 1 -0.3633 0.8884 -0.5166 31 1 -0.3633 -0.8916 -0.5111 32 1 0.9160 -2.6252 0.6400 33 1 2.5947 -3.1652 0.3980 34 1 2.4096 -3.2846 -3.2088 35 1 3.2952 -2.2112 -2.0988 36 1 5.8084 -4.3579 -3.8581 37 1 -0.1746 -4.0554 -0.6727 38 1 1.2803 -5.0109 -1.0449 39 1 1.8264 -5.6082 -3.3665 40 1 0.8937 -5.9883 -5.6393 41 1 -1.2842 -5.0000 -6.2273 42 1 -1.6565 -3.3135 -2.4535 43 1 4.9953 -1.8889 0.9760 44 1 4.7338 -2.2811 -0.7447 45 1 6.8995 1.1082 0.2044 46 1 5.8668 0.3691 1.4493 47 1 4.9767 1.9553 -1.0025 48 1 4.7178 2.3636 0.7153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891458049.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:55 Heat of formation + Delta-G solvation = 78.658394 kcal Electronic energy + Delta-G solvation = -31158.126592 eV Core-core repulsion = 27215.032315 eV Total energy + Delta-G solvation = -3943.094277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.18431 -39.72589 -37.70133 -36.98979 -33.38194 -32.72178 -32.34402 -31.53294 -31.03877 -29.92945 -27.87520 -27.08829 -26.04041 -24.30955 -23.66771 -23.02969 -22.97504 -22.18054 -20.27346 -18.95098 -18.89806 -16.80548 -16.49391 -16.33148 -15.93278 -15.64921 -15.34780 -14.99924 -14.82438 -14.77334 -14.53684 -14.40570 -13.79582 -13.46616 -13.26953 -13.16630 -13.04169 -12.63154 -12.50245 -12.44679 -12.33943 -12.23905 -11.72853 -11.65531 -11.28437 -11.08172 -11.03334 -10.97255 -10.72990 -10.52646 -10.43359 -10.15190 -10.05551 -9.78771 -9.25314 -9.20349 -9.02622 -8.73526 -8.54963 -8.51724 -7.76801 -7.40800 -6.13302 -4.24316 1.55545 1.81666 2.28610 2.86190 3.12245 3.18727 3.28913 3.30040 4.23903 4.29846 4.33153 4.67885 4.82475 4.89413 5.11435 5.16775 5.20138 5.25080 5.26724 5.37761 5.44052 5.47681 5.49639 5.59006 5.63317 5.66665 5.72792 5.77588 5.80229 5.88305 5.97302 6.06835 6.12161 6.17360 6.19566 6.23291 6.42101 6.60792 6.71658 6.83033 6.91078 7.04875 7.08831 7.20391 7.44695 7.45782 7.68700 7.80151 7.81496 8.03209 8.13121 8.15214 8.37556 8.85651 9.42340 10.90722 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.005121 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.207229 B = 5466.498948 C = 7729.692839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.375 5.375 3 N -0.297 5.297 4 C 0.077 3.923 5 C -0.266 4.266 6 C 0.131 3.869 7 C 0.116 3.884 8 N -0.534 5.534 9 C 0.181 3.819 10 C -0.557 4.557 11 H 0.058 0.942 12 C 0.075 3.925 13 N -0.874 5.874 14 Si 0.877 3.123 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.281 1.281 18 C 0.100 3.900 19 C -0.109 4.109 20 C -0.044 4.044 21 C -0.178 4.178 22 C 0.083 3.917 23 N -0.498 5.498 24 C 0.102 3.898 25 C 0.133 3.867 26 O -0.374 6.374 27 C 0.064 3.936 28 C -0.067 4.067 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.264 0.736 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.148 0.852 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.046 0.954 44 H 0.138 0.862 45 H 0.094 0.906 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.024 3.069 6.138 9.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.158 5.158 3 N -0.118 5.118 4 C -0.092 4.092 5 C -0.278 4.278 6 C 0.005 3.995 7 C -0.014 4.014 8 N -0.258 5.258 9 C 0.056 3.944 10 C -0.596 4.596 11 H 0.076 0.924 12 C -0.130 4.130 13 N -0.511 5.511 14 Si 0.705 3.295 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.207 1.207 18 C -0.028 4.028 19 C -0.111 4.111 20 C -0.070 4.070 21 C -0.198 4.198 22 C -0.074 4.074 23 N -0.206 5.206 24 C -0.055 4.055 25 C 0.056 3.944 26 O -0.291 6.291 27 C -0.014 4.014 28 C -0.107 4.107 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.166 0.834 40 H 0.145 0.855 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.064 0.936 44 H 0.155 0.845 45 H 0.112 0.888 46 H 0.066 0.934 47 H 0.106 0.894 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.815 4.766 5.397 10.626 hybrid contribution 2.193 -2.305 0.911 3.310 sum -5.622 2.461 6.308 8.801 Atomic orbital electron populations 1.21724 0.74792 1.04579 1.02181 1.48351 1.05948 1.02753 1.58771 1.76760 1.01119 1.08233 1.25684 1.21976 0.93264 0.93804 1.00130 1.20397 0.95515 0.94184 1.17669 1.20274 0.89884 0.90150 0.99159 1.20534 1.00163 0.88278 0.92394 1.62597 1.23176 1.30496 1.09494 1.19934 0.84637 0.96564 0.93257 1.21606 1.10288 1.15492 1.12198 0.92407 1.24885 0.97112 0.96336 0.94690 1.69948 1.23914 1.39596 1.17630 0.86773 0.80689 0.83051 0.78986 1.19824 1.21020 1.20682 1.20843 0.96246 0.93910 0.91812 1.20725 0.95239 0.97538 0.97582 1.21865 0.98981 0.93957 0.92231 1.22118 0.97430 1.02403 0.97855 1.22561 0.92252 0.94284 0.98330 1.67602 1.35337 1.14775 1.02935 1.22482 0.93738 0.96591 0.92687 1.21404 0.80557 0.91239 1.01195 1.88067 1.50678 1.30360 1.60043 1.22517 0.97436 0.86390 0.95057 1.20752 0.89481 0.97135 1.03287 0.91836 0.90050 0.88882 0.91535 0.90767 0.94502 0.94348 0.92620 0.91980 0.91913 0.83429 0.85488 0.83728 0.83692 0.93570 0.84470 0.88759 0.93351 0.89412 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.38 11.22 59.85 0.67 2.05 16 2 N -0.38 -6.45 4.03 -64.06 -0.26 -6.71 16 3 N -0.30 -5.54 12.55 33.78 0.42 -5.12 16 4 C 0.08 1.40 7.22 -82.34 -0.59 0.81 16 5 C -0.27 -5.10 5.25 -104.96 -0.55 -5.65 16 6 C 0.13 2.38 5.82 -82.46 -0.48 1.90 16 7 C 0.12 1.95 4.69 -4.98 -0.02 1.92 16 8 N -0.53 -9.79 4.64 -238.97 -1.11 -10.90 16 9 C 0.18 4.10 4.30 -4.98 -0.02 4.07 16 10 C -0.56 -12.85 5.25 -34.44 -0.18 -13.03 16 11 H 0.06 1.32 5.97 -52.49 -0.31 1.00 16 12 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 13 N -0.87 -23.35 13.29 55.43 0.74 -22.61 16 14 Si 0.88 19.40 29.54 -169.99 -5.02 14.38 16 15 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.10 1.63 4.88 -4.98 -0.02 1.61 16 19 C -0.11 -1.84 4.89 -104.48 -0.51 -2.35 16 20 C -0.04 -0.79 8.24 -39.28 -0.32 -1.11 16 21 C -0.18 -2.83 10.11 -39.44 -0.40 -3.23 16 22 C 0.08 1.27 11.18 -17.54 -0.20 1.07 16 23 N -0.50 -8.31 10.36 -13.25 -0.14 -8.44 16 24 C 0.10 1.64 10.86 -17.55 -0.19 1.45 16 25 C 0.13 2.60 6.77 36.10 0.24 2.84 16 26 O -0.37 -7.18 10.71 -35.23 -0.38 -7.56 16 27 C 0.06 0.92 6.75 37.47 0.25 1.17 16 28 C -0.07 -0.98 6.58 -27.41 -0.18 -1.16 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.12 7.80 -51.93 -0.41 0.72 16 32 H 0.07 0.93 7.73 -51.93 -0.40 0.52 16 33 H 0.07 1.34 6.41 -51.93 -0.33 1.01 16 34 H 0.04 0.94 6.42 -51.93 -0.33 0.61 16 35 H 0.04 0.99 5.40 -51.93 -0.28 0.71 16 36 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 37 H 0.06 0.84 7.81 -51.93 -0.41 0.43 16 38 H 0.06 1.11 6.09 -51.93 -0.32 0.79 16 39 H 0.15 2.91 7.23 -52.49 -0.38 2.53 16 40 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.14 3.13 5.24 -51.93 -0.27 2.86 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 47 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -29.75 381.42 -9.40 -39.15 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.80 Total: 7.95 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -2.60 Total: -5.89 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.34 Total: -53.78 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.38 Total: -7.56 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.75 -9.40 -39.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891458049.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.811 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds