Wall clock time and date at job start Wed Apr 1 2020 04:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40420 * 125.99177 * 2 1 4 4 C 1.29748 * 108.07979 * 180.22272 * 3 2 1 5 5 C 1.40814 * 108.28652 * 359.84743 * 4 3 2 6 6 C 1.34255 * 108.02333 * 359.87525 * 5 4 3 7 7 C 1.50705 * 126.20347 * 180.09478 * 6 5 4 8 8 N 1.46890 * 109.47063 * 262.45856 * 7 6 5 9 9 C 1.46900 * 111.00250 * 72.48233 * 8 7 6 10 10 C 1.50698 * 109.46997 * 67.61912 * 9 8 7 11 11 H 1.07999 * 120.00200 * 355.44312 * 10 9 8 12 12 C 1.37886 * 119.99787 * 175.44212 * 10 9 8 13 13 N 1.31507 * 119.99978 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99588 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47492 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46878 * 120.00194 * 14 12 10 17 17 H 1.48502 * 109.47331 * 239.99891 * 14 12 10 18 18 C 1.46898 * 111.00043 * 196.43672 * 8 7 6 19 19 C 1.50700 * 109.47485 * 169.99824 * 18 8 7 20 20 C 1.38671 * 120.41615 * 89.99841 * 19 18 8 21 21 C 1.38630 * 118.42173 * 179.97438 * 20 19 18 22 22 C 1.38227 * 119.16045 * 0.25824 * 21 20 19 23 23 N 1.31858 * 120.76216 * 359.49111 * 22 21 20 24 24 C 1.31884 * 121.72653 * 0.49942 * 23 22 21 25 25 C 1.50892 * 122.56601 * 179.73106 * 5 4 3 26 26 O 1.43464 * 107.71718 * 344.96708 * 25 5 4 27 27 C 1.42916 * 114.62956 * 51.43980 * 26 25 5 28 28 C 1.51035 * 129.49489 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47057 * 270.17618 * 1 2 3 30 30 H 1.09002 * 109.46788 * 30.18023 * 1 2 3 31 31 H 1.09005 * 109.46856 * 150.17558 * 1 2 3 32 32 H 1.08996 * 109.46860 * 142.45787 * 7 6 5 33 33 H 1.08998 * 109.46915 * 22.46055 * 7 6 5 34 34 H 1.09000 * 109.47364 * 187.62233 * 9 8 7 35 35 H 1.09003 * 109.47466 * 307.62101 * 9 8 7 36 36 H 0.97004 * 119.99980 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47173 * 49.99757 * 18 8 7 38 38 H 1.08997 * 109.47075 * 289.99805 * 18 8 7 39 39 H 1.07999 * 120.79157 * 359.95642 * 20 19 18 40 40 H 1.07996 * 120.42189 * 179.97438 * 21 20 19 41 41 H 1.07999 * 119.62471 * 179.74985 * 22 21 20 42 42 H 1.07994 * 119.62138 * 179.74557 * 24 23 22 43 43 H 1.08999 * 109.81072 * 104.51368 * 25 5 4 44 44 H 1.08995 * 109.81139 * 225.41019 * 25 5 4 45 45 H 1.09002 * 109.39457 * 167.42320 * 27 26 25 46 46 H 1.08992 * 109.40025 * 47.69298 * 27 26 25 47 47 H 1.09001 * 109.84869 * 283.56251 * 28 4 3 48 48 H 1.08996 * 109.84925 * 44.55322 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2903 1.1361 0.0000 4 6 3.5249 0.7371 -0.0048 5 6 3.5341 -0.6710 -0.0045 6 6 2.2602 -1.0947 0.0035 7 6 1.7994 -2.5296 0.0087 8 7 1.4689 -2.9427 -1.3617 9 6 2.6849 -3.1117 -2.1683 10 6 3.4692 -4.2910 -1.6536 11 1 3.1403 -4.8130 -0.7672 12 6 4.6069 -4.7037 -2.3143 13 7 5.0078 -4.0678 -3.3934 14 14 5.5788 -6.1660 -1.6766 15 1 4.9226 -6.7027 -0.4574 16 1 5.6248 -7.2224 -2.7193 17 1 6.9613 -5.7357 -1.3467 18 6 0.6625 -4.1706 -1.3613 19 6 0.1382 -4.4277 -2.7506 20 6 0.8714 -5.1895 -3.6479 21 6 0.3498 -5.4004 -4.9148 22 6 -0.8727 -4.8438 -5.2411 23 7 -1.5447 -4.1286 -4.3605 24 6 -1.0794 -3.9078 -3.1463 25 6 4.8110 -1.4749 -0.0153 26 8 5.8805 -0.5906 -0.3793 27 6 5.9468 0.6121 0.3898 28 6 4.7973 1.5507 -0.0064 29 1 -0.3633 0.0032 1.0276 30 1 -0.3633 0.8884 -0.5166 31 1 -0.3633 -0.8916 -0.5111 32 1 0.9160 -2.6252 0.6400 33 1 2.5947 -3.1652 0.3980 34 1 2.4096 -3.2846 -3.2088 35 1 3.2952 -2.2112 -2.0988 36 1 5.8084 -4.3579 -3.8581 37 1 -0.1746 -4.0554 -0.6727 38 1 1.2803 -5.0109 -1.0449 39 1 1.8264 -5.6082 -3.3665 40 1 0.8937 -5.9883 -5.6393 41 1 -1.2842 -5.0000 -6.2273 42 1 -1.6565 -3.3135 -2.4535 43 1 4.9953 -1.8889 0.9760 44 1 4.7338 -2.2811 -0.7447 45 1 6.8995 1.1082 0.2044 46 1 5.8668 0.3691 1.4493 47 1 4.9767 1.9553 -1.0025 48 1 4.7178 2.3636 0.7153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891458049.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:53 Heat of formation + Delta-G solvation = 58.941722 kcal Electronic energy + Delta-G solvation = -31158.981571 eV Core-core repulsion = 27215.032315 eV Total energy + Delta-G solvation = -3943.949256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.52494 -41.00617 -39.04999 -38.48163 -34.73459 -34.48528 -33.67970 -32.81328 -32.29600 -31.28879 -29.43366 -28.55470 -27.32964 -25.97282 -25.02671 -24.29469 -24.20604 -23.62187 -21.74023 -20.33924 -20.21192 -18.51671 -17.79320 -17.72454 -17.29186 -16.99293 -16.77687 -16.40792 -16.29916 -16.17304 -15.87107 -15.72515 -15.33693 -14.81247 -14.61708 -14.40703 -14.32959 -14.09768 -13.92107 -13.75085 -13.66215 -13.35516 -13.12424 -12.94955 -12.85595 -12.75258 -12.56144 -12.42864 -12.15670 -12.06734 -11.88550 -11.73701 -11.59853 -11.49712 -10.61601 -10.57271 -10.47235 -10.31166 -10.05187 -9.79303 -9.15628 -8.98709 -8.04809 -6.20588 0.30228 0.49529 0.92738 1.38813 1.44768 1.50878 1.64665 1.74120 2.43133 2.95295 3.02939 3.23645 3.44332 3.51699 3.68354 3.78653 3.97515 4.03175 4.15675 4.18750 4.25835 4.30650 4.32867 4.38592 4.41303 4.48801 4.51890 4.56127 4.60230 4.70032 4.76408 4.80437 4.85821 4.89112 4.92969 4.98460 5.08398 5.23346 5.31980 5.34007 5.41112 5.51365 5.61259 5.72092 5.88029 5.92642 6.07037 6.18616 6.28514 6.35467 6.46980 6.78540 6.98005 7.12388 7.49064 8.97874 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.005121 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.207229 B = 5466.498948 C = 7729.692839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.375 5.375 3 N -0.315 5.315 4 C 0.063 3.937 5 C -0.293 4.293 6 C 0.126 3.874 7 C 0.121 3.879 8 N -0.531 5.531 9 C 0.208 3.792 10 C -0.534 4.534 11 H 0.063 0.937 12 C 0.030 3.970 13 N -0.915 5.915 14 Si 0.931 3.069 15 H -0.261 1.261 16 H -0.286 1.286 17 H -0.289 1.289 18 C 0.103 3.897 19 C -0.119 4.119 20 C -0.066 4.066 21 C -0.184 4.184 22 C 0.084 3.916 23 N -0.511 5.511 24 C 0.103 3.897 25 C 0.141 3.859 26 O -0.404 6.404 27 C 0.060 3.940 28 C -0.065 4.065 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.003 0.997 35 H 0.003 0.997 36 H 0.259 0.741 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.178 0.822 42 H 0.173 0.827 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.062 0.938 47 H 0.086 0.914 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.906 3.414 7.631 11.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.158 5.158 3 N -0.136 5.136 4 C -0.104 4.104 5 C -0.305 4.305 6 C -0.002 4.002 7 C -0.008 4.008 8 N -0.255 5.255 9 C 0.082 3.918 10 C -0.573 4.573 11 H 0.081 0.919 12 C -0.170 4.170 13 N -0.554 5.554 14 Si 0.758 3.242 15 H -0.185 1.185 16 H -0.212 1.212 17 H -0.215 1.215 18 C -0.024 4.024 19 C -0.122 4.122 20 C -0.092 4.092 21 C -0.204 4.204 22 C -0.073 4.073 23 N -0.220 5.220 24 C -0.054 4.054 25 C 0.064 3.936 26 O -0.322 6.322 27 C -0.017 4.017 28 C -0.104 4.104 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.068 0.932 37 H 0.121 0.879 38 H 0.065 0.935 39 H 0.138 0.862 40 H 0.160 0.840 41 H 0.195 0.805 42 H 0.190 0.810 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.142 0.858 46 H 0.080 0.920 47 H 0.104 0.896 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.731 5.110 6.916 12.986 hybrid contribution 2.704 -2.367 0.436 3.620 sum -7.027 2.743 7.353 10.534 Atomic orbital electron populations 1.22080 0.72296 1.05364 1.04305 1.48709 1.07352 1.02001 1.57705 1.76699 1.01441 1.09119 1.26362 1.22506 0.94282 0.93915 0.99733 1.20561 0.95832 0.94951 1.19140 1.20455 0.90004 0.90937 0.98794 1.20561 1.01350 0.87262 0.91663 1.62455 1.21147 1.31678 1.10186 1.19380 0.85709 0.94554 0.92184 1.21731 1.09422 1.14746 1.11370 0.91852 1.25491 0.98265 0.98388 0.94884 1.70077 1.24501 1.41474 1.19335 0.85925 0.79077 0.80496 0.78738 1.18512 1.21239 1.21526 1.20912 0.96800 0.92174 0.92548 1.20812 0.95771 0.97840 0.97753 1.21793 0.98407 0.95243 0.93771 1.22328 0.97990 1.02622 0.97418 1.23060 0.91679 0.93107 0.99404 1.67688 1.35719 1.15193 1.03365 1.22859 0.93356 0.96169 0.92998 1.21077 0.81450 0.90791 1.00278 1.88001 1.50554 1.32078 1.61607 1.22825 0.98864 0.84719 0.95289 1.20883 0.87921 0.97540 1.04087 0.88980 0.89355 0.88049 0.87608 0.92232 0.97936 0.97913 0.93155 0.87924 0.93483 0.86227 0.83971 0.80547 0.81027 0.92440 0.88469 0.85766 0.91992 0.89614 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.23 11.22 127.77 1.43 3.66 16 2 N -0.37 -12.31 4.03 -356.58 -1.44 -13.74 16 3 N -0.32 -11.42 12.55 -47.04 -0.59 -12.01 16 4 C 0.06 2.29 7.22 43.60 0.31 2.61 16 5 C -0.29 -11.32 5.25 -20.08 -0.11 -11.43 16 6 C 0.13 4.47 5.82 41.12 0.24 4.71 16 7 C 0.12 3.90 4.69 85.56 0.40 4.30 16 8 N -0.53 -19.17 4.64 -909.97 -4.23 -23.40 16 9 C 0.21 9.74 4.30 85.56 0.37 10.11 16 10 C -0.53 -25.37 5.25 25.60 0.13 -25.24 16 11 H 0.06 2.91 5.97 -2.91 -0.02 2.89 16 12 C 0.03 1.56 5.46 84.66 0.46 2.02 16 13 N -0.91 -51.31 13.29 21.45 0.28 -51.02 16 14 Si 0.93 40.88 29.54 68.60 2.03 42.91 16 15 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 16 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 18 C 0.10 3.22 4.88 85.56 0.42 3.64 16 19 C -0.12 -3.94 4.89 -19.77 -0.10 -4.04 16 20 C -0.07 -2.38 8.24 22.47 0.19 -2.19 16 21 C -0.18 -5.79 10.11 22.36 0.23 -5.56 16 22 C 0.08 2.44 11.18 84.69 0.95 3.39 16 23 N -0.51 -16.01 10.36 -195.84 -2.03 -18.04 16 24 C 0.10 3.09 10.86 84.67 0.92 4.01 16 25 C 0.14 5.70 6.77 71.30 0.48 6.18 16 26 O -0.40 -15.83 10.71 -148.98 -1.60 -17.43 16 27 C 0.06 1.65 6.75 72.18 0.49 2.14 16 28 C -0.07 -1.83 6.58 30.16 0.20 -1.63 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.10 2.10 7.80 -2.38 -0.02 2.08 16 32 H 0.11 2.57 7.73 -2.39 -0.02 2.55 16 33 H 0.06 2.12 6.41 -2.39 -0.02 2.10 16 34 H 0.00 0.14 6.42 -2.39 -0.02 0.12 16 35 H 0.00 0.15 5.40 -2.39 -0.01 0.14 16 36 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 37 H 0.10 2.38 7.81 -2.39 -0.02 2.36 16 38 H 0.05 1.63 6.09 -2.39 -0.01 1.61 16 39 H 0.12 4.97 7.23 -2.91 -0.02 4.95 16 40 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 41 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16 42 H 0.17 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.10 4.70 5.24 -2.39 -0.01 4.69 16 45 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 47 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -67.76 381.42 0.43 -67.33 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.98 Total: 28.72 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 7.02 Total: -3.33 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -8.00 Total: -118.21 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -1.60 Total: -17.43 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -67.76 0.43 -67.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891458049.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.276 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds