Wall clock time and date at job start Wed Apr 1 2020 03:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.47124 * 2 1 4 4 C 1.34641 * 116.99784 * 180.02562 * 3 2 1 5 5 O 1.21507 * 120.00206 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99504 * 179.97438 * 4 3 2 7 7 C 1.46504 * 120.00376 * 0.02562 * 6 4 3 8 8 C 1.46503 * 119.99767 * 179.97438 * 6 4 3 9 9 C 1.52995 * 109.47007 * 90.00183 * 8 6 4 10 10 C 1.52998 * 109.47398 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47557 * 180.02562 * 10 9 8 12 12 O 1.20828 * 119.99828 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99951 * 179.97438 * 11 10 9 14 14 C 1.45208 * 116.99562 * 180.02562 * 13 11 10 15 15 C 1.53065 * 109.44258 * 89.80295 * 14 13 11 16 16 C 1.53192 * 109.29648 * 181.23391 * 15 14 13 17 17 N 1.46922 * 108.89269 * 305.57538 * 16 15 14 18 18 C 1.36942 * 120.62796 * 233.51528 * 17 16 15 19 19 H 1.08007 * 119.99636 * 151.83092 * 18 17 16 20 20 C 1.38806 * 120.00203 * 331.83144 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08250 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.07925 * 20 18 17 23 23 H 1.48503 * 109.47195 * 89.99708 * 22 20 18 24 24 H 1.48498 * 109.47355 * 210.00264 * 22 20 18 25 25 H 1.48504 * 109.46850 * 330.00278 * 22 20 18 26 26 C 1.46924 * 118.73925 * 53.53382 * 17 16 15 27 27 C 1.53049 * 109.45518 * 210.00230 * 14 13 11 28 28 H 1.08999 * 109.47278 * 59.99390 * 1 2 3 29 29 H 1.08994 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46784 * 299.99991 * 1 2 3 31 31 H 1.09001 * 109.46793 * 240.00521 * 2 1 3 32 32 H 1.08993 * 109.47328 * 120.00172 * 2 1 3 33 33 H 1.08999 * 109.46977 * 269.99694 * 7 6 4 34 34 H 1.08997 * 109.47027 * 30.00092 * 7 6 4 35 35 H 1.09002 * 109.47291 * 149.99465 * 7 6 4 36 36 H 1.08996 * 109.47095 * 329.99989 * 8 6 4 37 37 H 1.09000 * 109.47332 * 210.00487 * 8 6 4 38 38 H 1.09004 * 109.47263 * 60.00224 * 9 8 6 39 39 H 1.09000 * 109.47322 * 300.00309 * 9 8 6 40 40 H 1.09004 * 109.46623 * 59.99964 * 10 9 8 41 41 H 1.09000 * 109.47244 * 300.00489 * 10 9 8 42 42 H 1.08996 * 109.45901 * 329.97140 * 14 13 11 43 43 H 1.09005 * 109.39523 * 61.35455 * 15 14 13 44 44 H 1.09004 * 109.62174 * 301.25143 * 15 14 13 45 45 H 1.09003 * 109.58615 * 185.71531 * 16 15 14 46 46 H 1.08998 * 109.58372 * 65.43477 * 16 15 14 47 47 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 48 48 H 1.09007 * 109.58325 * 66.18371 * 26 17 16 49 49 H 1.08996 * 109.58499 * 186.46256 * 26 17 16 50 50 H 1.09002 * 109.49883 * 58.68152 * 27 14 13 51 51 H 1.08997 * 109.52642 * 298.59460 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5818 -0.0015 6 7 3.8639 2.7908 -0.0011 7 6 2.9715 3.9527 -0.0005 8 6 5.3163 2.9828 -0.0011 9 6 5.8219 3.0490 -1.4436 10 6 7.3386 3.2501 -1.4437 11 6 7.8366 3.3159 -2.8645 12 8 7.0582 3.2130 -3.7828 13 8 9.1448 3.4899 -3.1097 14 6 9.5528 3.5443 -4.5023 15 6 9.5010 4.9936 -4.9920 16 6 9.9023 5.0432 -6.4696 17 7 11.2116 4.3960 -6.6290 18 6 12.2426 5.0506 -7.2485 19 1 13.2645 4.8182 -6.9871 20 6 11.9744 6.0128 -8.2124 21 7 10.7845 6.0698 -8.7723 22 14 13.3022 7.2269 -8.7150 23 1 14.0822 6.6666 -9.8477 24 1 12.6719 8.5051 -9.1323 25 1 14.2081 7.4740 -7.5646 26 6 11.3936 3.0330 -6.1115 27 6 10.9791 3.0060 -4.6370 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.7494 4.2407 -1.0281 34 1 2.0448 3.6987 0.5140 35 1 3.4563 4.7830 0.5129 36 1 5.7931 2.1483 0.5131 37 1 5.5599 3.9129 0.5124 38 1 5.3452 3.8835 -1.9578 39 1 5.5783 2.1189 -1.9571 40 1 7.8157 2.4158 -0.9293 41 1 7.5819 4.1804 -0.9303 42 1 8.8768 2.9357 -5.1028 43 1 10.1934 5.5985 -4.4065 44 1 8.4895 5.3831 -4.8764 45 1 9.9655 6.0812 -6.7964 46 1 9.1590 4.5164 -7.0680 47 1 10.5972 6.7419 -9.4461 48 1 10.7714 2.3407 -6.6788 49 1 12.4404 2.7437 -6.2044 50 1 11.0178 1.9815 -4.2669 51 1 11.6598 3.6285 -4.0563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892863764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:30 Heat of formation + Delta-G solvation = -156.160502 kcal Electronic energy + Delta-G solvation = -29866.605756 eV Core-core repulsion = 25573.727296 eV Total energy + Delta-G solvation = -4292.878459 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.87478 -40.31843 -37.89766 -37.41627 -36.12094 -35.76739 -33.73347 -32.68127 -31.93920 -30.31207 -29.73164 -28.36818 -26.84669 -25.21358 -23.93333 -22.93947 -22.25219 -21.89446 -20.78946 -20.27367 -19.29462 -18.47748 -17.57793 -17.27939 -16.98907 -16.92866 -16.35144 -15.90504 -15.31112 -15.00338 -14.76270 -14.72351 -13.99772 -13.86380 -13.68885 -13.57975 -13.32102 -13.17987 -13.02203 -12.87228 -12.86499 -12.60395 -12.44025 -12.24935 -12.17987 -11.98048 -11.88565 -11.52949 -11.21658 -11.15198 -11.03720 -10.87425 -10.83068 -10.73505 -10.67311 -10.32844 -10.26482 -10.20450 -9.90498 -9.66855 -9.39674 -9.21370 -8.48848 -6.72490 -5.81417 -3.24548 1.74328 2.42375 2.48064 2.92674 3.36886 3.43810 3.46328 3.48638 4.47797 4.52033 4.53914 4.58207 4.59975 4.66362 4.77233 4.88387 4.97803 5.05929 5.12691 5.17775 5.25207 5.26034 5.33884 5.35634 5.37000 5.38353 5.44946 5.52473 5.54557 5.73198 5.75368 5.90520 5.99027 6.03018 6.09614 6.21668 6.31740 6.48026 6.52509 6.59379 6.70114 6.88871 6.90547 6.98106 7.30914 7.61240 7.77501 7.93180 8.02143 8.41934 9.17653 9.80689 10.37337 11.27616 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.001664 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.551285 B =16823.196863 C =16950.127598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 O -0.370 6.370 4 C 0.648 3.352 5 O -0.569 6.569 6 N -0.598 5.598 7 C 0.082 3.918 8 C 0.132 3.868 9 C -0.128 4.128 10 C -0.111 4.111 11 C 0.456 3.544 12 O -0.509 6.509 13 O -0.359 6.359 14 C 0.097 3.903 15 C -0.152 4.152 16 C 0.175 3.825 17 N -0.592 5.592 18 C -0.256 4.256 19 H 0.067 0.933 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.148 3.852 27 C -0.127 4.127 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.022 0.978 47 H 0.255 0.745 48 H 0.021 0.979 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.952 -6.933 22.304 29.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.006 3.994 3 O -0.284 6.284 4 C 0.403 3.597 5 O -0.458 6.458 6 N -0.338 5.338 7 C -0.061 4.061 8 C 0.010 3.990 9 C -0.166 4.166 10 C -0.149 4.149 11 C 0.299 3.701 12 O -0.398 6.398 13 O -0.276 6.276 14 C 0.044 3.956 15 C -0.192 4.192 16 C 0.048 3.952 17 N -0.315 5.315 18 C -0.385 4.385 19 H 0.085 0.915 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.204 1.204 26 C 0.021 3.979 27 C -0.167 4.167 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.111 0.889 46 H 0.040 0.960 47 H 0.065 0.935 48 H 0.039 0.961 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.043 -7.189 21.853 29.236 hybrid contribution 0.532 0.622 -0.508 0.963 sum -17.511 -6.566 21.345 28.379 Atomic orbital electron populations 1.21828 0.92483 1.03148 1.03523 1.22972 0.94846 0.78665 1.02889 1.86234 1.22058 1.33252 1.86887 1.18038 0.81228 0.84091 0.76367 1.91009 1.59819 1.39377 1.55550 1.46605 1.07273 1.03542 1.76370 1.21828 0.94181 0.87482 1.02565 1.21545 0.77001 1.03366 0.97049 1.21813 0.93303 1.04538 0.96994 1.21245 0.96350 1.05676 0.91647 1.23500 0.81425 0.72752 0.92411 1.90669 1.56525 1.45570 1.46994 1.86523 1.25790 1.82014 1.33311 1.22924 0.96604 0.99009 0.77086 1.22655 1.00555 0.94107 1.01874 1.20756 0.85955 1.00444 0.88002 1.44111 1.10339 1.10400 1.66631 1.19181 0.87251 1.17333 1.14735 0.91511 1.25075 0.96901 1.01453 0.96151 1.70029 1.21438 1.35509 1.27673 0.86284 0.81155 0.80853 0.78398 1.21332 1.21539 1.20421 1.20893 0.99128 0.88200 0.89707 1.22217 0.93810 0.99906 1.00742 0.91387 0.89936 0.91528 0.91045 0.91177 0.92188 0.90430 0.90582 0.89122 0.89307 0.90517 0.90367 0.87594 0.87630 0.90439 0.91752 0.92835 0.88879 0.96009 0.93525 0.96134 0.91788 0.92291 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.29 37.16 0.38 -0.33 16 2 C 0.08 0.61 6.19 37.16 0.23 0.84 16 3 O -0.37 -3.57 9.05 -40.33 -0.36 -3.93 16 4 C 0.65 7.33 8.40 54.05 0.45 7.78 16 5 O -0.57 -8.10 15.71 -19.28 -0.30 -8.41 16 6 N -0.60 -5.24 2.87 -187.41 -0.54 -5.78 16 7 C 0.08 0.47 10.49 59.85 0.63 1.10 16 8 C 0.13 1.01 5.45 -4.04 -0.02 0.98 16 9 C -0.13 -1.26 4.83 -26.73 -0.13 -1.39 16 10 C -0.11 -1.07 5.81 -27.89 -0.16 -1.23 16 11 C 0.46 6.92 7.93 36.00 0.29 7.21 16 12 O -0.51 -9.43 15.20 -18.75 -0.29 -9.71 16 13 O -0.36 -5.99 9.88 -39.25 -0.39 -6.38 16 14 C 0.10 1.85 2.41 -26.67 -0.06 1.78 16 15 C -0.15 -3.14 5.72 -26.60 -0.15 -3.29 16 16 C 0.17 4.30 5.30 -3.71 -0.02 4.28 16 17 N -0.59 -15.03 3.00 -172.32 -0.52 -15.54 16 18 C -0.26 -7.02 9.58 -15.06 -0.14 -7.17 16 19 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -26.36 11.20 55.49 0.62 -25.74 16 22 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 27 C -0.13 -2.32 5.75 -26.61 -0.15 -2.47 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.41 7.37 -51.93 -0.38 0.03 16 35 H 0.08 0.28 7.89 -51.93 -0.41 -0.13 16 36 H 0.09 0.75 7.42 -51.93 -0.39 0.37 16 37 H 0.09 0.42 7.89 -51.93 -0.41 0.01 16 38 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 40 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.58 7.16 -51.93 -0.37 1.21 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.09 2.53 6.06 -51.93 -0.31 2.21 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 50 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 415.49 15.07 6.26 6.26 Total: -1.00 -34.72 415.49 -8.51 -43.24 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.99 Total: -1.80 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 1.02 Total: 11.19 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.43 Total: -47.06 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.34 Total: -28.43 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.72 -8.51 -43.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892863764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.924 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds