Wall clock time and date at job start Wed Apr 1 2020 03:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45201 * 109.47128 * 2 1 4 4 C 1.34228 * 116.99533 * 179.97438 * 3 2 1 5 5 O 1.20818 * 120.00354 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99637 * 180.02562 * 4 3 2 7 7 H 1.09007 * 109.53712 * 299.90610 * 6 4 3 8 8 C 1.53121 * 109.50728 * 60.00232 * 6 4 3 9 9 C 1.53109 * 109.21449 * 177.56426 * 8 6 4 10 10 C 1.53044 * 109.27850 * 302.43806 * 9 8 6 11 11 N 1.46847 * 109.57208 * 59.08563 * 10 9 8 12 12 C 1.46899 * 111.00007 * 174.19389 * 11 10 9 13 13 C 1.50694 * 109.47296 * 294.20910 * 12 11 10 14 14 O 1.21294 * 119.99717 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00289 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99946 * 359.97438 * 15 13 12 17 17 H 1.07993 * 120.00109 * 325.65722 * 16 15 13 18 18 C 1.38954 * 119.99556 * 145.65034 * 16 15 13 19 19 N 1.31409 * 120.00361 * 338.15731 * 18 16 15 20 20 Si 1.86806 * 119.99530 * 158.16550 * 18 16 15 21 21 H 1.48500 * 109.47114 * 89.99743 * 20 18 16 22 22 H 1.48502 * 109.46888 * 209.99665 * 20 18 16 23 23 H 1.48500 * 109.47215 * 329.99693 * 20 18 16 24 24 C 1.46502 * 120.00290 * 180.02562 * 15 13 12 25 25 C 1.53001 * 109.47307 * 84.55079 * 24 15 13 26 26 O 1.42896 * 109.47093 * 65.00032 * 25 24 15 27 27 C 1.42904 * 113.99990 * 180.02562 * 26 25 24 28 28 C 1.46849 * 111.19970 * 298.29476 * 11 10 9 29 29 H 1.09002 * 109.46660 * 59.99733 * 1 2 3 30 30 H 1.08994 * 109.46947 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46874 * 299.99967 * 1 2 3 32 32 H 1.08997 * 109.46874 * 240.00033 * 2 1 3 33 33 H 1.09000 * 109.46514 * 119.99745 * 2 1 3 34 34 H 1.09000 * 109.52394 * 297.50608 * 8 6 4 35 35 H 1.08997 * 109.51983 * 57.62213 * 8 6 4 36 36 H 1.08993 * 109.50867 * 62.32038 * 9 8 6 37 37 H 1.09007 * 109.49990 * 182.43784 * 9 8 6 38 38 H 1.08995 * 109.40939 * 299.07486 * 10 9 8 39 39 H 1.09000 * 109.45728 * 179.12835 * 10 9 8 40 40 H 1.09002 * 109.47200 * 54.21278 * 12 11 10 41 41 H 1.09003 * 109.47107 * 174.21435 * 12 11 10 42 42 H 0.96997 * 119.99649 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47285 * 204.54953 * 24 15 13 44 44 H 1.09002 * 109.47154 * 324.54813 * 24 15 13 45 45 H 1.09000 * 109.47354 * 185.00347 * 25 24 15 46 46 H 1.09007 * 109.46848 * 305.00312 * 25 24 15 47 47 H 1.08992 * 109.47097 * 60.00069 * 27 26 25 48 48 H 1.08995 * 109.46898 * 180.02562 * 27 26 25 49 49 H 1.09001 * 109.46540 * 299.99977 * 27 26 25 50 50 H 1.09005 * 109.46086 * 301.72126 * 28 11 10 51 51 H 1.09003 * 109.46295 * 181.76030 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5872 3.4702 -0.8893 8 6 3.4490 3.6852 1.2512 9 6 4.0863 5.0772 1.2761 10 6 5.6099 4.9360 1.2431 11 7 6.0109 4.2147 0.0284 12 6 7.4734 4.1812 -0.1053 13 6 7.9899 5.5796 -0.3253 14 8 7.2158 6.5126 -0.3661 15 7 9.3118 5.7937 -0.4766 16 6 10.1868 4.7393 -0.4300 17 1 9.9907 3.9034 0.2251 18 6 11.3259 4.7461 -1.2257 19 7 11.3708 5.4980 -2.3025 20 14 12.7934 3.6860 -0.7649 21 1 12.6588 2.3509 -1.4009 22 1 14.0418 4.3362 -1.2381 23 1 12.8462 3.5282 0.7108 24 6 9.8141 7.1534 -0.6899 25 6 9.9954 7.8479 0.6613 26 8 11.0156 7.1807 1.4067 27 6 11.2648 7.7530 2.6922 28 6 5.4491 2.8581 0.0065 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3635 3.7819 1.2298 35 1 3.7478 3.1317 2.1413 36 1 3.7555 5.6446 0.4064 37 1 3.7878 5.5978 2.1862 38 1 5.9414 4.3813 2.1209 39 1 6.0664 5.9258 1.2451 40 1 7.9121 3.7706 0.8041 41 1 7.7462 3.5553 -0.9550 42 1 12.1662 5.5029 -2.8577 43 1 10.7724 7.1097 -1.2074 44 1 9.1003 7.7138 -1.2937 45 1 10.2836 8.8867 0.5001 46 1 9.0579 7.8129 1.2164 47 1 10.3537 7.7157 3.2893 48 1 12.0518 7.1903 3.1941 49 1 11.5792 8.7899 2.5734 50 1 5.7814 2.3131 0.8901 51 1 5.7891 2.3387 -0.8895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909562848.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:28 Heat of formation + Delta-G solvation = -175.551007 kcal Electronic energy + Delta-G solvation = -31389.760959 eV Core-core repulsion = 27096.041665 eV Total energy + Delta-G solvation = -4293.719295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.83813 -40.75532 -39.41958 -38.43204 -37.65918 -36.52335 -34.67249 -33.47982 -32.71289 -31.94344 -31.23349 -28.38844 -27.25078 -26.40725 -25.90979 -24.47904 -23.73460 -23.19115 -22.09062 -20.89582 -20.71949 -18.90603 -18.61669 -17.93666 -17.62025 -17.49461 -17.14254 -16.94086 -16.41066 -16.33492 -16.02611 -15.97492 -15.60340 -15.37943 -15.02425 -14.90943 -14.81208 -14.32962 -14.08641 -13.96640 -13.64857 -13.57855 -13.55053 -13.21941 -13.02638 -12.90100 -12.88888 -12.67464 -12.50418 -12.48799 -12.42848 -12.39085 -12.09406 -11.91351 -11.77538 -11.74451 -11.52136 -11.45657 -11.28456 -10.90896 -10.52671 -10.19902 -9.41399 -9.24063 -8.24538 -5.93429 1.09712 1.42418 1.49404 1.54961 1.60503 2.06659 2.35703 2.70509 3.01439 3.15505 3.31244 3.47583 3.71045 3.82392 4.01602 4.08405 4.11249 4.13931 4.23931 4.27113 4.32216 4.35984 4.40160 4.48482 4.54797 4.56801 4.60555 4.64492 4.66424 4.69905 4.73559 4.80827 4.86325 4.87982 4.92349 4.94234 4.99490 5.04786 5.15206 5.23131 5.39901 5.40638 5.43564 5.52925 5.97619 6.04181 6.18550 6.42463 6.47741 6.67170 7.21317 7.68147 8.08209 8.78577 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.002697 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.036734 B =10380.331130 C =11498.683245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.354 6.354 4 C 0.477 3.523 5 O -0.538 6.538 6 C -0.071 4.071 7 H 0.126 0.874 8 C -0.101 4.101 9 C -0.102 4.102 10 C 0.048 3.952 11 N -0.527 5.527 12 C 0.071 3.929 13 C 0.463 3.537 14 O -0.611 6.611 15 N -0.442 5.442 16 C -0.335 4.335 17 H 0.088 0.912 18 C 0.010 3.990 19 N -0.891 5.891 20 Si 0.973 3.027 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.267 1.267 24 C 0.113 3.887 25 C 0.066 3.934 26 O -0.398 6.398 27 C 0.025 3.975 28 C 0.076 3.924 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.025 0.975 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.270 0.730 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.032 0.968 47 H 0.039 0.961 48 H 0.092 0.908 49 H 0.052 0.948 50 H 0.035 0.965 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.354 -4.901 8.249 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.321 3.679 5 O -0.428 6.428 6 C -0.090 4.090 7 H 0.143 0.857 8 C -0.138 4.138 9 C -0.140 4.140 10 C -0.079 4.079 11 N -0.252 5.252 12 C -0.059 4.059 13 C 0.252 3.748 14 O -0.498 6.498 15 N -0.160 5.160 16 C -0.463 4.463 17 H 0.105 0.895 18 C -0.192 4.192 19 N -0.529 5.529 20 Si 0.798 3.202 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.191 1.191 24 C -0.011 4.011 25 C -0.012 4.012 26 O -0.317 6.317 27 C -0.071 4.071 28 C -0.052 4.052 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.111 0.889 49 H 0.070 0.930 50 H 0.054 0.946 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.481 -4.612 7.604 17.854 hybrid contribution 1.516 -0.799 0.594 1.814 sum -13.965 -5.411 8.198 17.074 Atomic orbital electron populations 1.21820 0.90190 1.04362 1.03840 1.23322 0.97233 0.79218 1.02503 1.86508 1.23408 1.33690 1.83459 1.23778 0.80855 0.92277 0.71027 1.90660 1.61206 1.44164 1.46781 1.21023 0.94563 0.89363 1.04087 0.85666 1.21553 1.02240 0.95421 0.94595 1.21502 0.92417 0.96598 1.03481 1.22277 0.97841 0.99022 0.88781 1.61471 1.08369 1.15515 1.39871 1.21504 0.87506 0.95161 1.01774 1.20672 0.82197 0.90943 0.80985 1.90448 1.56424 1.45437 1.57464 1.43538 1.04210 1.06319 1.61951 1.19454 1.03791 1.00377 1.22659 0.89455 1.25932 1.01530 0.98624 0.93144 1.69999 1.29505 1.41329 1.12108 0.85248 0.77981 0.78071 0.78900 1.19915 1.20804 1.19149 1.21394 1.01431 0.83444 0.94799 1.22798 0.89804 0.95371 0.93185 1.88067 1.56963 1.56741 1.29892 1.22878 1.00879 0.98808 0.84540 1.21805 0.92883 0.88911 1.01573 0.91256 0.88259 0.91033 0.91545 0.91327 0.88099 0.91579 0.91129 0.88960 0.95667 0.91033 0.93026 0.89045 0.92049 0.88518 0.92517 0.91726 0.94957 0.94234 0.88941 0.92978 0.94636 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.29 71.98 0.74 -0.73 16 2 C 0.05 0.85 6.19 71.98 0.45 1.29 16 3 O -0.35 -7.54 10.15 -51.39 -0.52 -8.07 16 4 C 0.48 12.19 7.26 71.24 0.52 12.70 16 5 O -0.54 -16.97 15.73 21.99 0.35 -16.62 16 6 C -0.07 -1.75 2.79 -11.49 -0.03 -1.79 16 7 H 0.13 2.97 8.14 -2.38 -0.02 2.95 16 8 C -0.10 -2.07 5.21 30.67 0.16 -1.91 16 9 C -0.10 -2.46 6.10 30.65 0.19 -2.27 16 10 C 0.05 1.58 5.10 86.33 0.44 2.02 16 11 N -0.53 -19.02 4.40 -900.92 -3.96 -22.98 16 12 C 0.07 2.97 4.11 85.56 0.35 3.32 16 13 C 0.46 22.64 7.27 87.66 0.64 23.28 16 14 O -0.61 -31.45 14.00 -3.07 -0.04 -31.50 16 15 N -0.44 -22.56 2.51 -635.54 -1.60 -24.15 16 16 C -0.34 -17.29 8.48 84.04 0.71 -16.58 16 17 H 0.09 4.36 6.98 -2.91 -0.02 4.34 16 18 C 0.01 0.53 4.93 84.93 0.42 0.95 16 19 N -0.89 -48.10 11.34 21.66 0.25 -47.86 16 20 Si 0.97 41.35 29.61 68.60 2.03 43.38 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 C 0.11 5.54 5.29 86.38 0.46 5.99 16 25 C 0.07 2.74 6.24 71.98 0.45 3.19 16 26 O -0.40 -16.72 10.44 -148.98 -1.55 -18.27 16 27 C 0.03 0.76 11.01 113.37 1.25 2.01 16 28 C 0.08 2.36 4.04 86.32 0.35 2.71 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 33 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 2.81 5.78 -2.39 -0.01 2.80 16 40 H 0.05 2.11 7.63 -2.39 -0.02 2.09 16 41 H 0.09 3.91 7.94 -2.39 -0.02 3.90 16 42 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 43 H 0.10 5.11 5.37 -2.39 -0.01 5.10 16 44 H 0.06 2.83 7.59 -2.39 -0.02 2.81 16 45 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 49 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.04 1.12 8.08 -2.38 -0.02 1.10 16 51 H 0.07 2.38 7.99 -2.39 -0.02 2.36 16 Total: -1.00 -66.60 409.72 2.93 -63.67 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.90 Total: 28.22 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 7.08 Total: 34.17 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -5.31 Total: -94.99 kcal Atomic # 8 Polarization: -72.68 SS G_CDS: -1.77 Total: -74.46 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -66.60 2.93 -63.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909562848.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.877 kcal (2) G-P(sol) polarization free energy of solvation -66.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds