Wall clock time and date at job start Wed Apr 1 2020 03:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.47012 * 2 1 4 4 C 1.34224 * 116.99917 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00151 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99953 * 179.97438 * 4 3 2 7 7 C 1.53043 * 109.45979 * 179.97438 * 6 4 3 8 8 C 1.53192 * 109.31176 * 178.62820 * 7 6 4 9 9 N 1.46922 * 108.89392 * 54.56475 * 8 7 6 10 10 C 1.34776 * 120.63048 * 126.46020 * 9 8 7 11 11 O 1.21281 * 120.00168 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99934 * 180.02562 * 10 9 8 13 13 N 1.46907 * 109.46865 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99641 * 293.94676 * 13 12 10 15 15 C 1.46900 * 110.99713 * 170.00162 * 13 12 10 16 16 C 1.53000 * 109.47054 * 284.26421 * 15 13 12 17 17 H 1.08996 * 109.47102 * 57.01055 * 16 15 13 18 18 O 1.42904 * 109.47239 * 297.01074 * 16 15 13 19 19 C 1.50700 * 109.47501 * 177.01115 * 16 15 13 20 20 H 1.08003 * 119.99572 * 359.97438 * 19 16 15 21 21 C 1.37870 * 120.00261 * 180.02562 * 19 16 15 22 22 N 1.31519 * 119.99898 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 120.00142 * 180.02562 * 21 19 16 24 24 H 1.48497 * 109.47320 * 59.99788 * 23 21 19 25 25 H 1.48496 * 109.47519 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46999 * 300.00064 * 23 21 19 27 27 C 1.46965 * 118.71685 * 306.64158 * 9 8 7 28 28 C 1.53041 * 109.44993 * 59.94077 * 6 4 3 29 29 H 1.09002 * 109.46825 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47315 * 300.00522 * 1 2 3 31 31 H 1.09006 * 109.47047 * 60.00237 * 1 2 3 32 32 H 1.08996 * 109.47315 * 239.99477 * 2 1 3 33 33 H 1.09000 * 109.46536 * 119.99287 * 2 1 3 34 34 H 1.09000 * 109.46160 * 299.96890 * 6 4 3 35 35 H 1.09000 * 109.49635 * 58.68022 * 7 6 4 36 36 H 1.09000 * 109.52500 * 298.59355 * 7 6 4 37 37 H 1.09001 * 109.58723 * 174.42505 * 8 7 6 38 38 H 1.09001 * 109.58954 * 294.70619 * 8 7 6 39 39 H 1.09004 * 109.47175 * 299.99597 * 12 10 9 40 40 H 1.08995 * 109.47111 * 60.00202 * 12 10 9 41 41 H 1.09002 * 109.46857 * 66.04651 * 14 13 12 42 42 H 1.09001 * 109.47256 * 186.04438 * 14 13 12 43 43 H 1.08999 * 109.47284 * 306.04829 * 14 13 12 44 44 H 1.09000 * 109.47684 * 44.26183 * 15 13 12 45 45 H 1.09001 * 109.47081 * 164.26423 * 15 13 12 46 46 H 0.96700 * 114.00038 * 300.00299 * 18 16 15 47 47 H 0.97005 * 119.99496 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.46471 * 293.57129 * 27 9 8 49 49 H 1.08996 * 109.71186 * 173.28514 * 27 9 8 50 50 H 1.09007 * 109.49447 * 301.32641 * 28 6 4 51 51 H 1.08994 * 109.50003 * 61.42388 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4490 2.8570 0.0014 8 6 6.0309 4.2737 -0.0338 9 7 5.4664 5.0476 1.0803 10 6 6.2731 5.6835 1.9528 11 8 7.4772 5.6204 1.8223 12 6 5.6789 6.4729 3.0908 13 7 6.7584 7.0656 3.8918 14 6 7.5479 6.0246 4.5634 15 6 6.2247 8.0301 4.8627 16 6 5.8469 9.3249 4.1404 17 1 5.1292 9.1041 3.3504 18 8 7.0184 9.9111 3.5695 19 6 5.2317 10.2874 5.1234 20 1 5.1208 10.0038 6.1596 21 6 4.8094 11.5296 4.6996 22 7 4.9440 11.8747 3.4377 23 14 4.0474 12.7229 5.9182 24 1 5.0258 13.0243 6.9938 25 1 3.6806 13.9795 5.2172 26 1 2.8304 12.1137 6.5126 27 6 4.0055 5.1116 1.2270 28 6 3.4469 3.6853 1.2483 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.5855 3.4687 -0.8908 35 1 5.7850 2.3039 -0.8756 36 1 5.7862 2.3476 0.9041 37 1 7.1152 4.2260 0.0668 38 1 5.7723 4.7516 -0.9787 39 1 5.0460 7.2656 2.6916 40 1 5.0812 5.8119 3.7184 41 1 8.0750 5.4302 3.8171 42 1 8.2705 6.4917 5.2326 43 1 6.8839 5.3796 5.1389 44 1 5.3406 7.6109 5.3431 45 1 6.9819 8.2427 5.6174 46 1 7.7018 10.1342 4.2162 47 1 4.6465 12.7486 3.1396 48 1 3.5797 5.6587 0.3859 49 1 3.7514 5.6175 2.1583 50 1 2.3575 3.7219 1.2589 51 1 3.8028 3.1681 2.1393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929476653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:45 Heat of formation + Delta-G solvation = -190.634769 kcal Electronic energy + Delta-G solvation = -30838.695665 eV Core-core repulsion = 26544.322289 eV Total energy + Delta-G solvation = -4294.373376 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.90572 -41.09784 -39.03875 -38.20749 -37.58279 -36.37689 -34.31144 -34.16392 -32.68717 -32.19924 -30.57644 -29.49308 -27.44088 -27.15465 -24.75875 -24.18263 -23.92213 -22.92544 -22.02415 -21.24846 -19.98909 -19.05831 -18.81341 -18.26390 -17.67291 -17.23097 -17.10008 -16.81739 -16.59736 -16.36282 -15.84534 -15.64318 -15.47030 -15.24967 -14.97013 -14.76017 -14.65598 -14.56368 -14.23356 -13.97275 -13.75855 -13.64808 -13.37321 -13.12079 -13.05976 -12.90393 -12.86647 -12.79578 -12.70209 -12.55234 -12.49896 -12.30004 -12.27734 -11.93774 -11.89991 -11.72549 -11.52975 -11.42155 -11.04554 -10.70008 -10.63832 -10.05773 -9.69227 -9.04457 -8.07925 -6.33973 1.10057 1.44536 1.46112 1.54010 1.56742 1.67524 1.90803 2.42537 3.10364 3.18511 3.39737 3.58395 3.60759 3.72738 3.98475 4.00188 4.07451 4.13820 4.15190 4.25459 4.27468 4.34102 4.34799 4.35333 4.42875 4.53779 4.58747 4.66723 4.70505 4.74501 4.80806 4.82868 4.83924 4.92873 4.96294 5.02593 5.04234 5.10331 5.15169 5.20300 5.45136 5.55295 5.64012 5.78122 5.99196 6.15610 6.25922 6.38932 6.67107 6.79454 7.21618 7.40220 7.67481 8.96097 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.002266 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.461097 B =12350.982563 C =13466.430954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.470 3.530 5 O -0.540 6.540 6 C -0.075 4.075 7 C -0.107 4.107 8 C 0.114 3.886 9 N -0.616 5.616 10 C 0.519 3.481 11 O -0.561 6.561 12 C 0.042 3.958 13 N -0.540 5.540 14 C 0.029 3.971 15 C 0.049 3.951 16 C 0.238 3.762 17 H 0.024 0.976 18 O -0.574 6.574 19 C -0.586 4.586 20 H 0.061 0.939 21 C 0.027 3.973 22 N -0.899 5.899 23 Si 0.958 3.042 24 H -0.270 1.270 25 H -0.287 1.287 26 H -0.265 1.265 27 C 0.102 3.898 28 C -0.117 4.117 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.139 0.861 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.029 0.971 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.351 0.649 47 H 0.260 0.740 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.113 0.887 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.086 -22.926 -6.889 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.273 6.273 4 C 0.315 3.685 5 O -0.430 6.430 6 C -0.094 4.094 7 C -0.146 4.146 8 C -0.008 4.008 9 N -0.350 5.350 10 C 0.307 3.693 11 O -0.439 6.439 12 C -0.089 4.089 13 N -0.264 5.264 14 C -0.119 4.119 15 C -0.079 4.079 16 C 0.180 3.820 17 H 0.042 0.958 18 O -0.377 6.377 19 C -0.624 4.624 20 H 0.079 0.921 21 C -0.176 4.176 22 N -0.536 5.536 23 Si 0.783 3.217 24 H -0.195 1.195 25 H -0.213 1.213 26 H -0.190 1.190 27 C -0.020 4.020 28 C -0.155 4.155 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.157 0.843 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.195 0.805 47 H 0.069 0.931 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.132 0.868 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.328 -22.985 -7.964 26.053 hybrid contribution -0.357 0.145 1.516 1.564 sum -9.685 -22.840 -6.448 25.633 Atomic orbital electron populations 1.21824 0.90500 1.04267 1.03822 1.23265 0.97030 0.79361 1.02391 1.86514 1.23878 1.33473 1.83427 1.24063 0.80661 0.92832 0.70989 1.90666 1.61212 1.44338 1.46791 1.21160 0.95640 0.89091 1.03510 1.21716 0.92728 0.96351 1.03755 1.21607 0.99418 0.90325 0.89450 1.48238 1.07692 1.50710 1.28392 1.20766 0.86601 0.78647 0.83247 1.90617 1.16205 1.62526 1.74588 1.22031 0.94016 0.98302 0.94568 1.61533 1.23233 1.16241 1.25386 1.22465 0.97540 0.93807 0.98083 1.22794 0.98171 0.93470 0.93422 1.19216 0.83653 0.87690 0.91478 0.95844 1.86528 1.29023 1.83891 1.38273 1.22008 1.42853 1.01325 0.96212 0.92067 1.25879 0.95137 1.00006 0.96580 1.70230 1.45628 1.21051 1.16646 0.85636 0.79143 0.77923 0.78974 1.19528 1.21297 1.19028 1.22018 0.77800 0.97186 1.04990 1.21891 1.03175 0.94637 0.95808 0.88490 0.91265 0.91104 0.91338 0.91670 0.84292 0.89096 0.92505 0.90462 0.89147 0.88480 0.90109 0.91294 0.91431 0.95241 0.94160 0.91147 0.80507 0.93093 0.88495 0.88511 0.86822 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 71.98 0.74 -0.32 16 2 C 0.05 0.66 6.19 71.98 0.45 1.11 16 3 O -0.36 -5.52 10.10 -51.36 -0.52 -6.04 16 4 C 0.47 8.38 7.25 71.24 0.52 8.90 16 5 O -0.54 -13.13 15.73 21.97 0.35 -12.79 16 6 C -0.08 -1.02 2.59 -11.51 -0.03 -1.05 16 7 C -0.11 -1.84 4.65 30.67 0.14 -1.69 16 8 C 0.11 2.29 6.43 86.36 0.56 2.85 16 9 N -0.62 -14.31 2.98 -818.82 -2.44 -16.74 16 10 C 0.52 16.65 7.46 87.66 0.65 17.30 16 11 O -0.56 -22.33 13.72 -3.03 -0.04 -22.38 16 12 C 0.04 1.34 3.62 85.56 0.31 1.65 16 13 N -0.54 -20.46 4.35 -927.02 -4.03 -24.49 16 14 C 0.03 0.94 9.19 127.69 1.17 2.11 16 15 C 0.05 1.97 4.59 86.30 0.40 2.37 16 16 C 0.24 12.00 2.90 29.85 0.09 12.09 16 17 H 0.02 1.31 6.71 -2.39 -0.02 1.30 16 18 O -0.57 -31.16 12.65 -148.98 -1.88 -33.04 16 19 C -0.59 -31.31 8.76 25.60 0.22 -31.09 16 20 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 21 C 0.03 1.45 5.40 84.65 0.46 1.91 16 22 N -0.90 -53.23 12.84 21.45 0.28 -52.95 16 23 Si 0.96 42.40 29.54 68.60 2.03 44.43 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 27 C 0.10 1.61 6.33 86.36 0.55 2.16 16 28 C -0.12 -1.48 5.30 30.67 0.16 -1.32 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.48 8.14 -2.38 -0.02 0.47 16 32 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 33 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 34 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.45 8.07 -2.39 -0.02 1.43 16 36 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 37 H 0.08 1.93 7.01 -2.39 -0.02 1.92 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.10 3.37 6.40 -2.38 -0.02 3.35 16 40 H 0.08 2.12 7.61 -2.39 -0.02 2.10 16 41 H 0.07 2.42 6.01 -2.39 -0.01 2.41 16 42 H 0.07 2.09 7.83 -2.39 -0.02 2.07 16 43 H 0.03 0.83 8.06 -2.39 -0.02 0.81 16 44 H 0.04 1.52 8.00 -2.39 -0.02 1.50 16 45 H 0.07 2.75 7.73 -2.39 -0.02 2.73 16 46 H 0.35 17.14 9.04 -74.06 -0.67 16.47 16 47 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 48 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.10 1.54 5.95 -2.39 -0.01 1.52 16 50 H 0.11 1.01 8.08 -2.38 -0.02 0.99 16 51 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -76.13 408.11 0.37 -75.76 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.26 Total: 31.25 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 6.38 Total: 16.98 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -6.20 Total: -94.18 kcal Atomic # 8 Polarization: -72.14 SS G_CDS: -2.10 Total: -74.24 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -76.13 0.37 -75.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929476653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.873 kcal (2) G-P(sol) polarization free energy of solvation -76.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds