Wall clock time and date at job start Wed Apr 1 2020 03:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45193 * 109.47507 * 2 1 4 4 C 1.34226 * 117.00664 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99360 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00530 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.52068 * 59.91716 * 6 4 3 8 8 C 1.53044 * 109.49879 * 180.02562 * 6 4 3 9 9 C 1.53042 * 109.53645 * 181.31989 * 8 6 4 10 10 C 1.53195 * 109.31118 * 298.63043 * 9 8 6 11 11 N 1.46924 * 108.77589 * 54.63841 * 10 9 8 12 12 C 1.34775 * 120.63168 * 126.36762 * 11 10 9 13 13 O 1.21286 * 120.00025 * 179.97438 * 12 11 10 14 14 C 1.50696 * 120.00112 * 0.02562 * 12 11 10 15 15 N 1.46900 * 109.47147 * 179.97438 * 14 12 11 16 16 C 1.46897 * 111.00227 * 293.95065 * 15 14 12 17 17 C 1.46908 * 110.99651 * 170.00028 * 15 14 12 18 18 C 1.53001 * 109.47008 * 287.96724 * 17 15 14 19 19 H 1.08996 * 109.46893 * 58.51378 * 18 17 15 20 20 O 1.42903 * 109.46752 * 298.51135 * 18 17 15 21 21 C 1.50698 * 109.46838 * 178.51504 * 18 17 15 22 22 H 1.08001 * 119.99818 * 359.97438 * 21 18 17 23 23 C 1.37878 * 119.99750 * 179.72560 * 21 18 17 24 24 N 1.31523 * 119.99519 * 180.27046 * 23 21 18 25 25 Si 1.86796 * 120.00095 * 0.27139 * 23 21 18 26 26 H 1.48499 * 109.47165 * 90.00325 * 25 23 21 27 27 H 1.48499 * 109.46906 * 210.00160 * 25 23 21 28 28 H 1.48498 * 109.47002 * 330.00144 * 25 23 21 29 29 C 1.46929 * 118.73981 * 306.64297 * 11 10 9 30 30 H 1.08997 * 109.46959 * 299.99907 * 1 2 3 31 31 H 1.09003 * 109.47124 * 60.00460 * 1 2 3 32 32 H 1.09001 * 109.47179 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46842 * 239.99650 * 2 1 3 34 34 H 1.09007 * 109.47046 * 120.00054 * 2 1 3 35 35 H 1.08993 * 109.46154 * 61.29508 * 8 6 4 36 36 H 1.08997 * 109.44221 * 301.32468 * 8 6 4 37 37 H 1.08996 * 109.49736 * 178.68340 * 9 8 6 38 38 H 1.08997 * 109.50109 * 58.58194 * 9 8 6 39 39 H 1.08999 * 109.58686 * 294.85240 * 10 9 8 40 40 H 1.08996 * 109.70360 * 174.49449 * 10 9 8 41 41 H 1.09005 * 109.46889 * 60.00051 * 14 12 11 42 42 H 1.08994 * 109.46989 * 300.00362 * 14 12 11 43 43 H 1.08995 * 109.47806 * 302.03652 * 16 15 14 44 44 H 1.09008 * 109.46696 * 62.03873 * 16 15 14 45 45 H 1.08997 * 109.47140 * 182.02991 * 16 15 14 46 46 H 1.09001 * 109.46506 * 167.96748 * 17 15 14 47 47 H 1.08998 * 109.46983 * 47.96933 * 17 15 14 48 48 H 0.96699 * 114.00000 * 299.99794 * 20 18 17 49 49 H 0.97003 * 119.99366 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.59027 * 173.14502 * 29 11 10 51 51 H 1.09003 * 109.58572 * 293.57247 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5838 3.4712 0.8885 8 6 5.4492 2.8579 0.0001 9 6 6.0351 4.2713 0.0328 10 6 5.5907 5.0330 -1.2199 11 7 4.1246 4.9895 -1.3046 12 6 3.4097 6.1255 -1.4267 13 8 2.1998 6.0761 -1.4961 14 6 4.1137 7.4569 -1.4782 15 7 3.1207 8.5309 -1.6131 16 6 2.4306 8.4504 -2.9074 17 6 3.7427 9.8491 -1.4294 18 6 4.0976 10.0443 0.0460 19 1 4.7742 9.2515 0.3649 20 8 2.9055 9.9984 0.8327 21 6 4.7687 11.3812 0.2285 22 1 4.9267 12.0268 -0.6228 23 6 5.1764 11.7824 1.4831 24 7 5.7573 12.9514 1.6431 25 14 4.9037 10.6654 2.9553 26 1 6.0817 9.7780 3.1283 27 1 4.7224 11.4912 4.1762 28 1 3.6902 9.8393 2.7318 29 6 3.4521 3.6843 -1.2474 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 5.7863 2.3457 -0.9010 36 1 5.7837 2.3058 0.8784 37 1 7.1233 4.2136 0.0565 38 1 5.6785 4.7926 0.9211 39 1 6.0219 4.5646 -2.1046 40 1 5.9224 6.0694 -1.1568 41 1 4.7894 7.4777 -2.3333 42 1 4.6840 7.6020 -0.5608 43 1 3.1620 8.5075 -3.7135 44 1 1.8906 7.5057 -2.9730 45 1 1.7268 9.2779 -2.9960 46 1 3.0453 10.6265 -1.7414 47 1 4.6487 9.9105 -2.0323 48 1 2.2563 10.6773 0.6031 49 1 6.0444 13.2335 2.5257 50 1 2.3730 3.8310 -1.2000 51 1 3.7054 3.1036 -2.1344 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929477426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:44 Heat of formation + Delta-G solvation = -159.490532 kcal Electronic energy + Delta-G solvation = -31314.078172 eV Core-core repulsion = 27021.055312 eV Total energy + Delta-G solvation = -4293.022860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.203 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.15062 -40.10253 -38.02700 -37.08952 -36.65767 -34.90931 -33.35841 -32.31306 -32.22065 -31.51575 -29.11856 -28.38557 -25.80728 -25.63504 -24.88554 -23.38698 -22.39744 -21.96139 -20.63697 -20.14707 -19.03881 -17.99658 -17.57516 -17.10024 -17.00698 -16.43701 -16.04534 -15.62020 -15.14272 -14.88835 -14.70187 -14.59411 -14.28507 -14.21683 -14.05156 -13.81629 -13.59754 -13.35719 -13.18359 -13.10179 -12.95107 -12.71226 -12.50215 -12.29876 -12.01036 -11.85422 -11.66125 -11.57663 -11.43262 -11.31318 -11.20987 -11.03964 -10.99552 -10.92012 -10.88517 -10.73609 -10.34943 -9.93737 -9.56135 -9.01465 -8.83335 -8.61890 -8.23526 -7.76273 -6.13445 -4.24817 1.81710 2.25447 2.70573 2.81827 3.37837 3.49001 3.77982 4.16670 4.20890 4.36676 4.41655 4.54215 4.55041 4.59295 4.63238 4.68128 4.75034 4.86267 4.87612 5.12382 5.21675 5.23472 5.29541 5.33012 5.40068 5.42586 5.47406 5.50663 5.52233 5.60626 5.63021 5.67147 5.74627 5.75225 5.93322 5.95553 6.07074 6.09823 6.22686 6.29283 6.37990 6.58197 7.11173 7.27385 7.39002 7.40134 7.52012 7.68568 8.25282 8.29385 8.83450 9.14387 9.51877 10.97093 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.002672 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.446379 B =10476.738345 C =10947.162486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.472 3.528 5 O -0.506 6.506 6 C -0.098 4.098 7 H 0.116 0.884 8 C -0.102 4.102 9 C -0.137 4.137 10 C 0.103 3.897 11 N -0.619 5.619 12 C 0.523 3.477 13 O -0.515 6.515 14 C 0.038 3.962 15 N -0.517 5.517 16 C 0.021 3.979 17 C 0.039 3.961 18 C 0.203 3.797 19 H 0.048 0.952 20 O -0.569 6.569 21 C -0.566 4.566 22 H 0.071 0.929 23 C 0.084 3.916 24 N -0.893 5.893 25 Si 0.869 3.131 26 H -0.289 1.289 27 H -0.296 1.296 28 H -0.214 1.214 29 C 0.126 3.874 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.108 0.892 43 H 0.012 0.988 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.034 0.966 48 H 0.355 0.645 49 H 0.265 0.735 50 H 0.106 0.894 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 -24.422 -6.724 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.315 3.685 5 O -0.394 6.394 6 C -0.118 4.118 7 H 0.134 0.866 8 C -0.140 4.140 9 C -0.175 4.175 10 C -0.020 4.020 11 N -0.356 5.356 12 C 0.311 3.689 13 O -0.389 6.389 14 C -0.093 4.093 15 N -0.241 5.241 16 C -0.127 4.127 17 C -0.088 4.088 18 C 0.144 3.856 19 H 0.066 0.934 20 O -0.374 6.374 21 C -0.604 4.604 22 H 0.089 0.911 23 C -0.121 4.121 24 N -0.530 5.530 25 Si 0.695 3.305 26 H -0.215 1.215 27 H -0.223 1.223 28 H -0.136 1.136 29 C 0.003 3.997 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.126 0.874 43 H 0.030 0.970 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.053 0.947 48 H 0.201 0.799 49 H 0.074 0.926 50 H 0.124 0.876 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.963 -25.180 -6.029 26.193 hybrid contribution 0.650 0.015 -0.054 0.652 sum -3.313 -25.165 -6.084 26.101 Atomic orbital electron populations 1.21819 0.92413 1.02986 1.03890 1.23058 0.95607 0.80034 1.02537 1.86557 1.24332 1.32518 1.83617 1.23543 0.80651 0.92260 0.72078 1.90664 1.60502 1.42970 1.45254 1.21451 0.97446 0.89967 1.02893 0.86634 1.21436 0.91109 0.97454 1.04006 1.21967 1.01532 0.95172 0.98848 1.21840 0.79510 1.02437 0.98240 1.48121 1.07059 1.05685 1.74710 1.20806 0.87754 0.85136 0.75199 1.90651 1.13837 1.86447 1.47936 1.22033 0.94427 0.89547 1.03268 1.61686 1.27928 1.02445 1.32022 1.22536 0.98113 1.03618 0.88456 1.22934 0.97265 0.87918 1.00667 1.19685 0.84253 0.96388 0.85227 0.93388 1.86669 1.30285 1.58310 1.62153 1.21516 1.40569 1.02540 0.95754 0.91063 1.24982 0.92779 0.94818 0.99473 1.69965 1.39216 1.20122 1.23747 0.87059 0.80917 0.81771 0.80730 1.21541 1.22270 1.13632 1.21250 1.00000 0.83479 0.94974 0.91287 0.91256 0.90212 0.91201 0.91225 0.90708 0.90509 0.89580 0.90622 0.91016 0.88883 0.92449 0.87375 0.96956 0.90194 0.91665 0.90773 0.94738 0.79933 0.92602 0.87554 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.48 6.19 37.16 0.23 0.71 16 3 O -0.35 -3.64 10.15 -39.25 -0.40 -4.03 16 4 C 0.47 5.02 7.26 36.00 0.26 5.28 16 5 O -0.51 -6.34 15.73 -18.75 -0.29 -6.63 16 6 C -0.10 -0.93 2.76 -91.87 -0.25 -1.18 16 7 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 8 C -0.10 -0.85 4.46 -26.69 -0.12 -0.97 16 9 C -0.14 -1.06 6.08 -26.61 -0.16 -1.23 16 10 C 0.10 0.87 6.34 -3.71 -0.02 0.85 16 11 N -0.62 -6.99 2.98 -173.03 -0.52 -7.50 16 12 C 0.52 7.71 7.44 -10.99 -0.08 7.62 16 13 O -0.51 -9.25 13.72 5.55 0.08 -9.17 16 14 C 0.04 0.57 3.64 -4.98 -0.02 0.56 16 15 N -0.52 -9.07 4.35 -244.37 -1.06 -10.13 16 16 C 0.02 0.32 9.18 60.06 0.55 0.87 16 17 C 0.04 0.75 4.57 -3.82 -0.02 0.74 16 18 C 0.20 4.60 2.33 -27.88 -0.07 4.53 16 19 H 0.05 1.10 5.99 -51.93 -0.31 0.79 16 20 O -0.57 -13.15 10.02 -35.23 -0.35 -13.50 16 21 C -0.57 -15.28 9.34 -34.44 -0.32 -15.60 16 22 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 23 C 0.08 2.37 5.47 -17.82 -0.10 2.28 16 24 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 25 Si 0.87 21.52 26.99 -169.99 -4.59 16.94 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.21 -5.27 5.30 56.52 0.30 -4.97 16 29 C 0.13 1.30 5.62 -3.93 -0.02 1.28 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 34 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 35 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 36 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.78 5.93 -51.93 -0.31 0.47 16 41 H 0.06 0.74 7.91 -51.93 -0.41 0.32 16 42 H 0.11 1.67 5.94 -51.93 -0.31 1.36 16 43 H 0.01 0.17 8.12 -51.93 -0.42 -0.25 16 44 H 0.08 1.29 5.92 -51.92 -0.31 0.98 16 45 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 46 H 0.07 1.41 7.87 -51.93 -0.41 1.01 16 47 H 0.03 0.64 8.05 -51.93 -0.42 0.23 16 48 H 0.35 7.42 9.04 45.56 0.41 7.83 16 49 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 50 H 0.11 1.28 7.01 -51.93 -0.36 0.92 16 51 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 402.01 15.07 6.06 6.06 Total: -1.00 -34.56 402.01 -8.04 -42.60 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.98 Total: 6.25 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 0.24 Total: 5.23 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.80 Total: -43.73 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.97 Total: -33.34 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.59 Total: 16.94 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.56 -8.04 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929477426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.888 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds