Wall clock time and date at job start Wed Apr 1 2020 04:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28453 * 124.16094 * 2 1 4 4 C 1.32135 * 111.39379 * 180.02562 * 3 2 1 5 5 C 1.40935 * 135.41858 * 179.97438 * 4 3 2 6 6 C 1.35827 * 119.54336 * 180.02562 * 5 4 3 7 7 C 1.39482 * 121.83942 * 0.02562 * 6 5 4 8 8 C 1.36071 * 121.57159 * 359.97438 * 7 6 5 9 9 C 1.40060 * 119.47022 * 0.02562 * 8 7 6 10 10 C 1.36196 * 124.15869 * 180.02562 * 2 1 3 11 11 C 1.46418 * 126.85416 * 359.97427 * 10 2 1 12 12 O 1.21737 * 120.00085 * 265.97419 * 11 10 2 13 13 N 1.34780 * 120.00297 * 85.97827 * 11 10 2 14 14 C 1.46502 * 120.00134 * 185.22589 * 13 11 10 15 15 H 1.08995 * 109.47504 * 34.99463 * 14 13 11 16 16 C 1.53005 * 109.46815 * 274.99569 * 14 13 11 17 17 C 1.53006 * 109.46675 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47156 * 60.00244 * 17 16 14 19 19 C 1.53007 * 109.46785 * 299.99613 * 18 17 16 20 20 H 1.08998 * 109.46535 * 179.97438 * 19 18 17 21 21 N 1.46496 * 109.46974 * 299.99910 * 19 18 17 22 22 C 1.36932 * 120.00427 * 275.00169 * 21 19 18 23 23 H 1.07999 * 119.99961 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00063 * 180.02562 * 22 21 19 25 25 N 1.31613 * 120.00370 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99787 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47117 * 90.00427 * 26 24 22 28 28 H 1.48500 * 109.46864 * 209.99826 * 26 24 22 29 29 H 1.48493 * 109.47352 * 329.99662 * 26 24 22 30 30 C 1.52998 * 109.46986 * 60.00514 * 19 18 17 31 31 H 1.09002 * 109.47299 * 85.43515 * 1 2 3 32 32 H 1.08995 * 109.46929 * 205.43397 * 1 2 3 33 33 H 1.08998 * 109.46982 * 325.43696 * 1 2 3 34 34 H 1.07999 * 120.22889 * 359.73284 * 5 4 3 35 35 H 1.07996 * 119.07749 * 180.02562 * 6 5 4 36 36 H 1.07998 * 119.21458 * 179.97438 * 7 6 5 37 37 H 1.07996 * 120.26708 * 180.02562 * 8 7 6 38 38 H 0.96996 * 119.99547 * 5.22320 * 13 11 10 39 39 H 1.08997 * 109.47062 * 299.99664 * 16 14 13 40 40 H 1.08998 * 109.46880 * 60.00474 * 16 14 13 41 41 H 1.09001 * 109.46731 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.46925 * 299.99532 * 17 16 14 43 43 H 1.08995 * 109.47376 * 59.99486 * 18 17 16 44 44 H 1.08998 * 109.46605 * 180.02562 * 18 17 16 45 45 H 0.97007 * 119.99810 * 95.00961 * 21 19 18 46 46 H 0.97001 * 120.00442 * 180.02562 * 25 24 22 47 47 H 1.09001 * 109.46759 * 179.97438 * 30 19 18 48 48 H 1.08995 * 109.47587 * 59.99875 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1863 1.0629 0.0000 4 6 3.4750 0.7709 -0.0006 5 6 4.6726 1.5139 -0.0012 6 6 5.8646 0.8628 -0.0022 7 6 5.9424 -0.5299 -0.0031 8 6 4.8246 -1.3058 -0.0025 9 6 3.5632 -0.6971 -0.0015 10 6 2.2297 -1.1270 -0.0005 11 6 1.7533 -2.5115 -0.0006 12 8 1.6257 -3.1114 1.0510 13 7 1.4562 -3.1219 -1.1649 14 6 0.8719 -4.4654 -1.1595 15 1 0.2071 -4.5690 -0.3019 16 6 1.9889 -5.5070 -1.0677 17 6 1.3786 -6.9100 -1.0626 18 6 0.5850 -7.1257 -2.3528 19 6 -0.5320 -6.0840 -2.4445 20 1 -1.0971 -6.2374 -3.3639 21 7 -1.4258 -6.2237 -1.2922 22 6 -2.4496 -7.1324 -1.3260 23 1 -2.5979 -7.7465 -2.2019 24 6 -3.2967 -7.2644 -0.2343 25 7 -3.1164 -6.5157 0.8330 26 14 -4.6938 -8.5036 -0.2807 27 1 -4.2168 -9.8073 0.2467 28 1 -5.8185 -8.0130 0.5557 29 1 -5.1567 -8.6756 -1.6811 30 6 0.0783 -4.6810 -2.4496 31 1 -0.3634 0.0818 -1.0244 32 1 -0.3633 -0.9280 0.4413 33 1 -0.3633 0.8463 0.5830 34 1 4.6427 2.5934 -0.0058 35 1 6.7777 1.4395 -0.0023 36 1 6.9129 -1.0036 -0.0042 37 1 4.9094 -2.3825 -0.0027 38 1 1.6293 -2.6717 -2.0065 39 1 2.6536 -5.4034 -1.9252 40 1 2.5545 -5.3530 -0.1487 41 1 2.1744 -7.6521 -0.9976 42 1 0.7137 -7.0139 -0.2052 43 1 1.2500 -7.0217 -3.2101 44 1 0.1499 -8.1250 -2.3489 45 1 -1.2924 -5.6724 -0.5053 46 1 -3.7081 -6.6082 1.5960 47 1 -0.7175 -3.9390 -2.5155 48 1 0.7432 -4.5771 -3.3070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981437269.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:58 Heat of formation + Delta-G solvation = 67.637071 kcal Electronic energy + Delta-G solvation = -29946.367748 eV Core-core repulsion = 26002.795550 eV Total energy + Delta-G solvation = -3943.572197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.64284 -39.83867 -38.03961 -37.84209 -34.59302 -33.20988 -32.92125 -32.13698 -30.99055 -30.05574 -28.99087 -28.06138 -27.63865 -24.07389 -23.63969 -22.87223 -22.45774 -21.94681 -21.24283 -19.99740 -18.75694 -17.87050 -17.62615 -17.35631 -16.65755 -16.45142 -15.85095 -15.32812 -14.81419 -14.64997 -14.46993 -14.30166 -14.03463 -13.75969 -13.62343 -13.49001 -13.47768 -13.18798 -13.14009 -12.40887 -12.12559 -12.03884 -11.92489 -11.89107 -11.81368 -11.44525 -10.96016 -10.87451 -10.77680 -10.54307 -10.48589 -10.26378 -10.23028 -10.15376 -10.09515 -9.65560 -9.55301 -9.03527 -8.84670 -8.84352 -7.91390 -6.97905 -5.77700 -3.06858 0.37730 1.47619 1.84168 2.19391 2.55840 3.08865 3.42078 3.47358 3.49012 3.64757 3.90996 4.33900 4.57463 4.69941 4.75890 4.78620 4.87990 4.98427 5.05580 5.13091 5.15294 5.19080 5.34626 5.41622 5.51862 5.56379 5.64343 5.66487 5.77420 5.83655 5.84365 6.02384 6.04182 6.14110 6.18707 6.25073 6.27124 6.38155 6.39432 6.42372 6.54728 6.56636 6.73398 6.74265 6.80176 6.97128 7.07225 7.39485 7.68955 7.73232 8.05030 8.40263 9.51586 10.08266 10.42430 11.44512 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.002653 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.337685 B =10550.067300 C =11408.443792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.215 5.215 3 N -0.289 5.289 4 C 0.057 3.943 5 C -0.079 4.079 6 C -0.100 4.100 7 C -0.131 4.131 8 C -0.060 4.060 9 C -0.129 4.129 10 C -0.017 4.017 11 C 0.588 3.412 12 O -0.507 6.507 13 N -0.709 5.709 14 C 0.145 3.855 15 H 0.101 0.899 16 C -0.122 4.122 17 C -0.109 4.109 18 C -0.136 4.136 19 C 0.180 3.820 20 H 0.052 0.948 21 N -0.721 5.721 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 C -0.128 4.128 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.399 0.601 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.043 0.957 44 H 0.062 0.938 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.068 0.932 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.891 14.325 -6.167 22.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N 0.002 4.998 3 N -0.126 5.126 4 C -0.087 4.087 5 C -0.099 4.099 6 C -0.122 4.122 7 C -0.151 4.151 8 C -0.080 4.080 9 C -0.138 4.138 10 C -0.153 4.153 11 C 0.370 3.630 12 O -0.379 6.379 13 N -0.360 5.360 14 C 0.042 3.958 15 H 0.119 0.881 16 C -0.160 4.160 17 C -0.148 4.148 18 C -0.176 4.176 19 C 0.069 3.931 20 H 0.070 0.930 21 N -0.364 5.364 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 C -0.166 4.166 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.233 0.767 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.643 14.705 -5.421 21.449 hybrid contribution -0.217 -0.938 -0.043 0.964 sum 14.426 13.767 -5.463 20.676 Atomic orbital electron populations 1.22508 0.71983 1.06631 1.05595 1.45755 1.08358 1.01621 1.44085 1.73431 1.03440 1.10741 1.24990 1.20599 0.91069 0.92285 1.04758 1.19872 0.88548 0.99109 1.02395 1.20608 0.97198 0.94527 0.99886 1.20644 0.98156 0.93686 1.02576 1.20089 0.89717 0.99650 0.98575 1.19354 0.91704 0.93933 1.08763 1.21153 0.91261 0.89029 1.13887 1.16751 0.77930 0.83567 0.84767 1.90954 1.50414 1.65340 1.31219 1.46221 1.63273 1.18852 1.07631 1.21202 0.94708 0.79083 1.00783 0.88140 1.21858 0.97335 0.95478 1.01346 1.21360 0.98879 0.94315 1.00210 1.22186 0.97947 1.01466 0.96030 1.20156 0.90316 0.90141 0.92489 0.92999 1.42497 1.32636 1.46107 1.15162 1.19215 1.04777 1.13076 0.99988 0.91202 1.24726 0.99716 0.99887 0.96496 1.69653 1.40425 1.42211 1.05609 0.86235 0.82075 0.81021 0.77107 1.21771 1.21873 1.20845 1.22090 0.98940 1.00026 0.95591 0.88389 0.87702 0.87543 0.85361 0.85535 0.85748 0.85820 0.76727 0.92590 0.92043 0.93151 0.90299 0.93819 0.91923 0.78126 0.93496 0.91377 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 11.12 59.85 0.67 1.33 16 2 N -0.22 -2.71 3.71 -63.76 -0.24 -2.95 16 3 N -0.29 -3.91 11.88 33.21 0.39 -3.51 16 4 C 0.06 0.76 7.53 -83.14 -0.63 0.13 16 5 C -0.08 -0.81 10.09 -39.43 -0.40 -1.21 16 6 C -0.10 -0.88 9.89 -39.98 -0.40 -1.27 16 7 C -0.13 -1.23 9.92 -39.90 -0.40 -1.62 16 8 C -0.06 -0.69 10.06 -39.68 -0.40 -1.09 16 9 C -0.13 -1.74 6.42 -104.93 -0.67 -2.41 16 10 C -0.02 -0.23 6.70 -81.93 -0.55 -0.78 16 11 C 0.59 8.80 6.81 -12.97 -0.09 8.71 16 12 O -0.51 -9.75 16.78 5.16 0.09 -9.66 16 13 N -0.71 -9.04 5.07 -55.19 -0.28 -9.32 16 14 C 0.15 2.20 2.24 -67.93 -0.15 2.05 16 15 H 0.10 1.94 6.02 -51.93 -0.31 1.63 16 16 C -0.12 -1.81 5.50 -26.73 -0.15 -1.96 16 17 C -0.11 -1.82 5.77 -26.73 -0.15 -1.98 16 18 C -0.14 -2.26 5.61 -26.73 -0.15 -2.41 16 19 C 0.18 3.26 3.10 -67.93 -0.21 3.04 16 20 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 21 N -0.72 -16.87 4.28 -53.43 -0.23 -17.10 16 22 C -0.24 -6.36 9.93 -15.06 -0.15 -6.50 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 26 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 C -0.13 -1.85 5.08 -26.73 -0.14 -1.98 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.04 7.56 -51.93 -0.39 0.64 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.40 4.01 8.59 -40.82 -0.35 3.66 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.60 7.60 -51.93 -0.39 1.21 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.38 9.67 6.06 -40.82 -0.25 9.43 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 392.39 15.07 5.91 5.91 Total: -1.00 -33.37 392.39 -9.86 -43.23 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -7.16 Total: 11.67 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -4.05 Total: -8.39 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.37 Total: -59.75 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.37 -9.86 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981437269.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.866 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds