Wall clock time and date at job start Wed Apr 1 2020 04:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28453 * 124.16094 * 2 1 4 4 C 1.32135 * 111.39379 * 180.02562 * 3 2 1 5 5 C 1.40935 * 135.41858 * 179.97438 * 4 3 2 6 6 C 1.35827 * 119.54336 * 180.02562 * 5 4 3 7 7 C 1.39482 * 121.83942 * 0.02562 * 6 5 4 8 8 C 1.36071 * 121.57159 * 359.97438 * 7 6 5 9 9 C 1.40060 * 119.47022 * 0.02562 * 8 7 6 10 10 C 1.36196 * 124.15869 * 180.02562 * 2 1 3 11 11 C 1.46418 * 126.85416 * 359.97427 * 10 2 1 12 12 O 1.21737 * 120.00085 * 265.97419 * 11 10 2 13 13 N 1.34780 * 120.00297 * 85.97827 * 11 10 2 14 14 C 1.46502 * 120.00134 * 185.22589 * 13 11 10 15 15 H 1.08995 * 109.47504 * 34.99463 * 14 13 11 16 16 C 1.53005 * 109.46815 * 274.99569 * 14 13 11 17 17 C 1.53006 * 109.46675 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47156 * 60.00244 * 17 16 14 19 19 C 1.53007 * 109.46785 * 299.99613 * 18 17 16 20 20 H 1.08998 * 109.46535 * 179.97438 * 19 18 17 21 21 N 1.46496 * 109.46974 * 299.99910 * 19 18 17 22 22 C 1.36932 * 120.00427 * 275.00169 * 21 19 18 23 23 H 1.07999 * 119.99961 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00063 * 180.02562 * 22 21 19 25 25 N 1.31613 * 120.00370 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99787 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47117 * 90.00427 * 26 24 22 28 28 H 1.48500 * 109.46864 * 209.99826 * 26 24 22 29 29 H 1.48493 * 109.47352 * 329.99662 * 26 24 22 30 30 C 1.52998 * 109.46986 * 60.00514 * 19 18 17 31 31 H 1.09002 * 109.47299 * 85.43515 * 1 2 3 32 32 H 1.08995 * 109.46929 * 205.43397 * 1 2 3 33 33 H 1.08998 * 109.46982 * 325.43696 * 1 2 3 34 34 H 1.07999 * 120.22889 * 359.73284 * 5 4 3 35 35 H 1.07996 * 119.07749 * 180.02562 * 6 5 4 36 36 H 1.07998 * 119.21458 * 179.97438 * 7 6 5 37 37 H 1.07996 * 120.26708 * 180.02562 * 8 7 6 38 38 H 0.96996 * 119.99547 * 5.22320 * 13 11 10 39 39 H 1.08997 * 109.47062 * 299.99664 * 16 14 13 40 40 H 1.08998 * 109.46880 * 60.00474 * 16 14 13 41 41 H 1.09001 * 109.46731 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.46925 * 299.99532 * 17 16 14 43 43 H 1.08995 * 109.47376 * 59.99486 * 18 17 16 44 44 H 1.08998 * 109.46605 * 180.02562 * 18 17 16 45 45 H 0.97007 * 119.99810 * 95.00961 * 21 19 18 46 46 H 0.97001 * 120.00442 * 180.02562 * 25 24 22 47 47 H 1.09001 * 109.46759 * 179.97438 * 30 19 18 48 48 H 1.08995 * 109.47587 * 59.99875 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1863 1.0629 0.0000 4 6 3.4750 0.7709 -0.0006 5 6 4.6726 1.5139 -0.0012 6 6 5.8646 0.8628 -0.0022 7 6 5.9424 -0.5299 -0.0031 8 6 4.8246 -1.3058 -0.0025 9 6 3.5632 -0.6971 -0.0015 10 6 2.2297 -1.1270 -0.0005 11 6 1.7533 -2.5115 -0.0006 12 8 1.6257 -3.1114 1.0510 13 7 1.4562 -3.1219 -1.1649 14 6 0.8719 -4.4654 -1.1595 15 1 0.2071 -4.5690 -0.3019 16 6 1.9889 -5.5070 -1.0677 17 6 1.3786 -6.9100 -1.0626 18 6 0.5850 -7.1257 -2.3528 19 6 -0.5320 -6.0840 -2.4445 20 1 -1.0971 -6.2374 -3.3639 21 7 -1.4258 -6.2237 -1.2922 22 6 -2.4496 -7.1324 -1.3260 23 1 -2.5979 -7.7465 -2.2019 24 6 -3.2967 -7.2644 -0.2343 25 7 -3.1164 -6.5157 0.8330 26 14 -4.6938 -8.5036 -0.2807 27 1 -4.2168 -9.8073 0.2467 28 1 -5.8185 -8.0130 0.5557 29 1 -5.1567 -8.6756 -1.6811 30 6 0.0783 -4.6810 -2.4496 31 1 -0.3634 0.0818 -1.0244 32 1 -0.3633 -0.9280 0.4413 33 1 -0.3633 0.8463 0.5830 34 1 4.6427 2.5934 -0.0058 35 1 6.7777 1.4395 -0.0023 36 1 6.9129 -1.0036 -0.0042 37 1 4.9094 -2.3825 -0.0027 38 1 1.6293 -2.6717 -2.0065 39 1 2.6536 -5.4034 -1.9252 40 1 2.5545 -5.3530 -0.1487 41 1 2.1744 -7.6521 -0.9976 42 1 0.7137 -7.0139 -0.2052 43 1 1.2500 -7.0217 -3.2101 44 1 0.1499 -8.1250 -2.3489 45 1 -1.2924 -5.6724 -0.5053 46 1 -3.7081 -6.6082 1.5960 47 1 -0.7175 -3.9390 -2.5155 48 1 0.7432 -4.5771 -3.3070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981437269.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:56 Heat of formation + Delta-G solvation = 45.963412 kcal Electronic energy + Delta-G solvation = -29947.307588 eV Core-core repulsion = 26002.795550 eV Total energy + Delta-G solvation = -3944.512038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.56876 -41.09010 -39.38607 -38.66799 -36.09717 -34.81145 -33.84131 -33.05157 -32.67516 -31.10443 -30.24194 -29.53677 -28.46464 -25.71080 -25.00625 -23.81282 -23.34350 -23.29461 -22.47440 -21.13052 -20.02696 -19.24396 -18.95874 -18.47036 -17.76876 -17.36186 -17.00951 -16.54974 -16.46841 -15.88950 -15.56526 -15.37391 -15.26939 -15.17846 -15.09220 -14.75679 -14.49917 -14.24713 -13.92968 -13.76619 -13.45112 -13.43124 -12.87940 -12.83716 -12.79813 -12.72659 -12.65608 -12.60113 -12.20909 -12.14676 -11.80861 -11.73699 -11.59057 -11.38362 -11.30093 -11.22216 -11.00228 -10.83241 -10.19813 -9.68691 -8.94601 -8.78816 -7.90149 -5.17159 -0.48875 0.63046 0.83984 1.28831 1.46961 1.48113 1.49904 1.56128 1.99718 2.58253 2.83574 3.05009 3.33282 3.43824 3.73284 3.85421 3.90717 3.95575 4.07397 4.11477 4.12376 4.15965 4.23201 4.35052 4.39942 4.42835 4.44287 4.54933 4.57364 4.68777 4.74580 4.81052 4.82954 4.99435 5.06250 5.10888 5.15061 5.27868 5.34246 5.36863 5.43087 5.49751 5.53504 5.55664 5.61234 5.62361 5.68092 5.99328 6.29039 6.32001 6.79252 6.93897 7.38078 8.17240 8.37484 9.33222 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.002653 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.337685 B =10550.067300 C =11408.443792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.215 5.215 3 N -0.300 5.300 4 C 0.036 3.964 5 C -0.089 4.089 6 C -0.092 4.092 7 C -0.115 4.115 8 C -0.091 4.091 9 C -0.140 4.140 10 C -0.042 4.042 11 C 0.598 3.402 12 O -0.560 6.560 13 N -0.688 5.688 14 C 0.154 3.846 15 H 0.051 0.949 16 C -0.112 4.112 17 C -0.106 4.106 18 C -0.128 4.128 19 C 0.169 3.831 20 H 0.056 0.944 21 N -0.733 5.733 22 C -0.229 4.229 23 H 0.078 0.922 24 C -0.079 4.079 25 N -0.972 5.972 26 Si 0.966 3.034 27 H -0.292 1.292 28 H -0.301 1.301 29 H -0.267 1.267 30 C -0.115 4.115 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.124 0.876 38 H 0.416 0.584 39 H 0.092 0.908 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.029 0.971 43 H 0.085 0.915 44 H 0.040 0.960 45 H 0.371 0.629 46 H 0.247 0.753 47 H 0.065 0.935 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.409 15.418 -8.935 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N 0.001 4.999 3 N -0.138 5.138 4 C -0.108 4.108 5 C -0.110 4.110 6 C -0.114 4.114 7 C -0.134 4.134 8 C -0.111 4.111 9 C -0.149 4.149 10 C -0.178 4.178 11 C 0.381 3.619 12 O -0.436 6.436 13 N -0.339 5.339 14 C 0.050 3.950 15 H 0.070 0.930 16 C -0.151 4.151 17 C -0.144 4.144 18 C -0.167 4.167 19 C 0.060 3.940 20 H 0.074 0.926 21 N -0.374 5.374 22 C -0.361 4.361 23 H 0.096 0.904 24 C -0.271 4.271 25 N -0.623 5.623 26 Si 0.796 3.204 27 H -0.220 1.220 28 H -0.228 1.228 29 H -0.192 1.192 30 C -0.153 4.153 31 H 0.140 0.860 32 H 0.109 0.891 33 H 0.141 0.859 34 H 0.166 0.834 35 H 0.183 0.817 36 H 0.173 0.827 37 H 0.142 0.858 38 H 0.254 0.746 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.204 0.796 46 H 0.056 0.944 47 H 0.084 0.916 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.189 15.802 -8.291 24.777 hybrid contribution -0.846 -1.216 0.761 1.665 sum 16.343 14.586 -7.530 23.163 Atomic orbital electron populations 1.22738 0.70644 1.06579 1.07351 1.45969 1.09147 1.01086 1.43671 1.73374 1.03966 1.11042 1.25376 1.21105 0.91706 0.92595 1.05395 1.20269 0.88076 1.00229 1.02400 1.21070 0.98062 0.94524 0.97759 1.21094 0.98701 0.94098 0.99496 1.20285 0.89848 1.00145 1.00818 1.19676 0.92138 0.94478 1.08627 1.20917 0.91928 0.88518 1.16420 1.16868 0.76799 0.83938 0.84304 1.90927 1.52853 1.66720 1.33125 1.45940 1.62054 1.17923 1.07988 1.20910 0.94351 0.80319 0.99467 0.93048 1.21772 0.97210 0.93989 1.02092 1.21285 0.98550 0.96127 0.98438 1.22073 0.97817 0.99493 0.97355 1.20481 0.90221 0.92870 0.90425 0.92636 1.42724 1.33013 1.45276 1.16407 1.19631 1.04523 1.12396 0.99544 0.90436 1.25482 1.02687 1.02307 0.96649 1.69829 1.41639 1.44530 1.06306 0.85239 0.79092 0.78577 0.77485 1.22002 1.22777 1.19182 1.21971 0.99383 0.97484 0.96499 0.85979 0.89136 0.85938 0.83407 0.81736 0.82697 0.85775 0.74613 0.88986 0.93671 0.91383 0.95182 0.89635 0.94073 0.79616 0.94438 0.91595 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 11.12 127.77 1.42 2.64 16 2 N -0.22 -5.48 3.71 -355.63 -1.32 -6.80 16 3 N -0.30 -8.02 11.88 -48.85 -0.58 -8.60 16 4 C 0.04 0.92 7.53 42.08 0.32 1.23 16 5 C -0.09 -1.65 10.09 22.37 0.23 -1.42 16 6 C -0.09 -1.29 9.89 22.01 0.22 -1.07 16 7 C -0.11 -1.81 9.92 22.07 0.22 -1.59 16 8 C -0.09 -2.00 10.06 22.21 0.22 -1.78 16 9 C -0.14 -3.76 6.42 -20.07 -0.13 -3.89 16 10 C -0.04 -1.17 6.70 41.05 0.28 -0.90 16 11 C 0.60 18.59 6.81 86.37 0.59 19.18 16 12 O -0.56 -23.10 16.78 -4.47 -0.07 -23.17 16 13 N -0.69 -17.30 5.07 -446.72 -2.26 -19.56 16 14 C 0.15 4.66 2.24 44.99 0.10 4.76 16 15 H 0.05 2.13 6.02 -2.39 -0.01 2.11 16 16 C -0.11 -3.23 5.50 30.60 0.17 -3.06 16 17 C -0.11 -3.49 5.77 30.60 0.18 -3.31 16 18 C -0.13 -4.01 5.61 30.60 0.17 -3.84 16 19 C 0.17 5.92 3.10 44.99 0.14 6.06 16 20 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 21 N -0.73 -35.16 4.28 -322.95 -1.38 -36.54 16 22 C -0.23 -12.34 9.93 84.03 0.83 -11.50 16 23 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 25 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 26 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 28 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 29 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 30 C -0.11 -3.10 5.08 30.59 0.16 -2.95 16 31 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.94 7.56 -2.39 -0.02 1.92 16 33 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 37 H 0.12 2.61 8.06 -2.91 -0.02 2.58 16 38 H 0.42 7.61 8.59 -92.71 -0.80 6.82 16 39 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.04 1.46 8.09 -2.39 -0.02 1.44 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.03 1.27 7.60 -2.39 -0.02 1.26 16 43 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.37 19.75 6.06 -92.70 -0.56 19.18 16 46 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 47 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -77.68 392.39 1.89 -75.79 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: -0.37 Total: 36.05 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 5.57 Total: -5.53 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -5.26 Total: -131.53 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.07 Total: -23.17 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -77.68 1.89 -75.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981437269.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.755 kcal (2) G-P(sol) polarization free energy of solvation -77.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds