Wall clock time and date at job start Wed Apr 1 2020 04:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28389 * 124.37309 * 2 1 4 4 C 1.31570 * 111.96735 * 179.86908 * 3 2 1 5 5 C 1.47388 * 126.82635 * 180.15024 * 4 3 2 6 6 O 1.21606 * 120.00480 * 180.26136 * 5 4 3 7 7 N 1.34785 * 119.99602 * 0.26612 * 5 4 3 8 8 C 1.46497 * 119.99734 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47504 * 325.00062 * 8 7 5 10 10 C 1.52998 * 109.47276 * 84.99759 * 8 7 5 11 11 C 1.52996 * 109.47614 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47288 * 300.00705 * 11 10 8 13 13 C 1.52999 * 109.47133 * 59.99451 * 12 11 10 14 14 H 1.08998 * 109.46974 * 60.00420 * 13 12 11 15 15 N 1.46505 * 109.46788 * 180.02562 * 13 12 11 16 16 C 1.36931 * 119.99635 * 274.99497 * 15 13 12 17 17 H 1.07994 * 120.00379 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99785 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99748 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00070 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46895 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47106 * 120.00393 * 20 18 16 23 23 H 1.48505 * 109.47242 * 240.00682 * 20 18 16 24 24 C 1.52996 * 109.47045 * 300.00114 * 13 12 11 25 25 C 1.46886 * 106.35021 * 0.37226 * 4 3 2 26 26 C 1.39200 * 135.55722 * 179.80587 * 25 4 3 27 27 C 1.36719 * 119.50426 * 180.02562 * 26 25 4 28 28 C 1.38893 * 120.52859 * 359.96043 * 27 26 25 29 29 C 1.36688 * 120.89058 * 0.02562 * 28 27 26 30 30 C 1.37050 * 124.37419 * 180.29136 * 2 1 3 31 31 H 1.09002 * 109.47391 * 269.70455 * 1 2 3 32 32 H 1.09001 * 109.46813 * 149.70511 * 1 2 3 33 33 H 1.09004 * 109.47041 * 29.70638 * 1 2 3 34 34 H 0.96996 * 120.00016 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.47367 * 300.00058 * 10 8 7 36 36 H 1.09010 * 109.46981 * 59.99759 * 10 8 7 37 37 H 1.08997 * 109.47727 * 179.97438 * 11 10 8 38 38 H 1.09010 * 109.46815 * 60.00059 * 11 10 8 39 39 H 1.09001 * 109.46529 * 299.99375 * 12 11 10 40 40 H 1.08996 * 109.47288 * 179.97438 * 12 11 10 41 41 H 0.97001 * 119.99978 * 94.99960 * 15 13 12 42 42 H 0.96999 * 119.99392 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.47484 * 299.99994 * 24 13 12 44 44 H 1.08998 * 109.47105 * 180.02562 * 24 13 12 45 45 H 1.07991 * 120.24721 * 359.97438 * 26 25 4 46 46 H 1.07999 * 119.73414 * 179.97438 * 27 26 25 47 47 H 1.07995 * 119.55847 * 180.02562 * 28 27 26 48 48 H 1.08003 * 120.10418 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1898 1.0597 0.0000 4 6 3.4748 0.7770 0.0028 5 6 4.5911 1.7395 0.0067 6 8 5.7393 1.3390 0.0042 7 7 4.3392 3.0636 0.0132 8 6 5.4486 4.0202 0.0177 9 1 6.2736 3.6171 0.6051 10 6 5.9168 4.2650 -1.4181 11 6 7.0751 5.2646 -1.4136 12 6 6.6072 6.5847 -0.7976 13 6 6.1391 6.3398 0.6383 14 1 6.9642 5.9371 1.2258 15 7 5.6905 7.6038 1.2279 16 6 6.5985 8.4492 1.8074 17 1 7.6453 8.1845 1.8296 18 6 6.1736 9.6471 2.3656 19 7 4.8978 9.9699 2.3382 20 14 7.4122 10.8008 3.1556 21 1 8.7714 10.2109 3.0562 22 1 7.3882 12.1089 2.4533 23 1 7.0619 10.9997 4.5849 24 6 4.9808 5.3403 0.6337 25 6 3.5759 -0.6883 -0.0043 26 6 4.6166 -1.6127 -0.0088 27 6 4.3299 -2.9495 -0.0158 28 6 3.0121 -3.3884 -0.0175 29 6 1.9756 -2.4972 -0.0128 30 6 2.2388 -1.1311 -0.0058 31 1 -0.3634 -0.0053 1.0276 32 1 -0.3633 -0.8874 -0.5184 33 1 -0.3633 0.8926 -0.5093 34 1 3.4233 3.3830 0.0149 35 1 6.2498 3.3245 -1.8571 36 1 5.0918 4.6681 -2.0056 37 1 7.4090 5.4386 -2.4365 38 1 7.9003 4.8618 -0.8260 39 1 5.7821 6.9874 -1.3851 40 1 7.4325 7.2966 -0.7939 41 1 4.7504 7.8417 1.2077 42 1 4.6009 10.8068 2.7285 43 1 4.1557 5.7430 0.0462 44 1 4.6470 5.1662 1.6566 45 1 5.6429 -1.2765 -0.0077 46 1 5.1344 -3.6699 -0.0198 47 1 2.8035 -4.4480 -0.0226 48 1 0.9557 -2.8525 -0.0146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981471279.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:13 Heat of formation + Delta-G solvation = 56.390155 kcal Electronic energy + Delta-G solvation = -28995.467416 eV Core-core repulsion = 25051.407515 eV Total energy + Delta-G solvation = -3944.059900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.75761 -39.74372 -38.09109 -37.82632 -34.63626 -33.95935 -33.22004 -31.09594 -30.88661 -30.48842 -29.49566 -27.91394 -27.22528 -24.21761 -23.69312 -23.00038 -22.34123 -21.82001 -20.86458 -20.14895 -19.35326 -18.14884 -17.51686 -17.02118 -16.63899 -16.27971 -15.97591 -15.56560 -14.93069 -14.70403 -14.45632 -14.38111 -14.20312 -13.79202 -13.69755 -13.53339 -13.34862 -13.20874 -13.09941 -12.65212 -12.30855 -12.27693 -12.09893 -12.01636 -11.51481 -11.20174 -10.96882 -10.88979 -10.86794 -10.67567 -10.33232 -10.30426 -10.26708 -10.14797 -10.08052 -9.70220 -9.57668 -9.07975 -8.95924 -8.83805 -8.27988 -6.93200 -5.74495 -3.02774 0.54592 1.05789 1.68057 2.00922 3.08939 3.17150 3.45130 3.51153 3.53090 3.54880 3.92570 4.09453 4.47961 4.60598 4.61475 4.65735 4.68983 4.84655 4.93951 5.02773 5.08030 5.13402 5.22723 5.37012 5.39006 5.54112 5.62707 5.65983 5.73615 5.79189 5.90971 5.93151 6.02030 6.07274 6.12934 6.19114 6.21959 6.34877 6.36991 6.38053 6.56915 6.57646 6.59155 6.67478 6.77562 7.00960 7.16674 7.40813 7.67544 7.74025 8.20447 8.44343 9.55534 10.13272 10.48064 11.48364 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019506 B = 0.002089 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.111023 B =13402.640813 C =14032.815909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.318 5.318 3 N -0.208 5.208 4 C 0.003 3.997 5 C 0.606 3.394 6 O -0.531 6.531 7 N -0.708 5.708 8 C 0.149 3.851 9 H 0.090 0.910 10 C -0.124 4.124 11 C -0.114 4.114 12 C -0.137 4.137 13 C 0.184 3.816 14 H 0.049 0.951 15 N -0.725 5.725 16 C -0.234 4.234 17 H 0.071 0.929 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.129 4.129 25 C -0.109 4.109 26 C -0.041 4.041 27 C -0.143 4.143 28 C -0.084 4.084 29 C -0.121 4.121 30 C 0.063 3.937 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.405 0.595 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.140 0.860 46 H 0.130 0.870 47 H 0.130 0.870 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 -27.765 -7.948 30.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.111 5.111 3 N -0.038 5.038 4 C -0.167 4.167 5 C 0.389 3.611 6 O -0.405 6.405 7 N -0.358 5.358 8 C 0.045 3.955 9 H 0.108 0.892 10 C -0.163 4.163 11 C -0.153 4.153 12 C -0.177 4.177 13 C 0.073 3.927 14 H 0.067 0.933 15 N -0.365 5.365 16 C -0.366 4.366 17 H 0.089 0.911 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.168 4.168 25 C -0.116 4.116 26 C -0.061 4.061 27 C -0.162 4.162 28 C -0.105 4.105 29 C -0.142 4.142 30 C -0.048 4.048 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.240 0.760 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.157 0.843 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.366 -27.025 -7.848 29.659 hybrid contribution 0.045 0.357 0.407 0.543 sum -9.321 -26.669 -7.441 29.214 Atomic orbital electron populations 1.22110 0.72979 1.05311 1.04325 1.45143 1.07188 1.00890 1.57884 1.72882 1.03867 1.13905 1.13115 1.22829 0.90267 0.92392 1.11236 1.16632 0.86259 0.81500 0.76665 1.90792 1.20450 1.78816 1.50453 1.46015 1.11061 1.04984 1.73781 1.21092 0.88907 0.88393 0.97079 0.89173 1.21892 0.98884 0.99393 0.96129 1.21484 0.97287 0.96023 1.00481 1.22291 1.01128 0.95622 0.98678 1.20101 0.93798 0.86683 0.92109 0.93288 1.42415 1.08006 1.17837 1.68223 1.19297 0.90230 0.98231 1.28810 0.91067 1.24744 0.96078 0.98382 1.01960 1.69675 1.13210 1.24447 1.50927 0.86130 0.80388 0.80977 0.78809 1.20529 1.21954 1.21936 1.22093 1.00163 0.93612 1.00962 1.19448 0.93034 0.91850 1.07308 1.20444 0.98968 0.91596 0.95103 1.20854 0.96774 0.95454 1.03145 1.20739 0.92245 0.99403 0.98119 1.19743 1.00088 0.88391 1.05985 1.19169 0.90580 0.90057 1.05033 0.89933 0.88973 0.88387 0.76036 0.92061 0.92020 0.92497 0.92116 0.92661 0.91892 0.78335 0.93642 0.91648 0.91243 0.84267 0.85226 0.85170 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 11.24 59.85 0.67 1.13 16 2 N -0.32 -3.14 3.74 -65.50 -0.24 -3.38 16 3 N -0.21 -2.53 11.52 34.46 0.40 -2.13 16 4 C 0.00 0.04 7.32 -80.76 -0.59 -0.55 16 5 C 0.61 9.04 7.78 -12.53 -0.10 8.94 16 6 O -0.53 -9.14 16.06 5.27 0.08 -9.05 16 7 N -0.71 -9.66 5.07 -54.90 -0.28 -9.94 16 8 C 0.15 2.20 2.45 -67.93 -0.17 2.04 16 9 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 10 C -0.12 -1.75 5.49 -26.73 -0.15 -1.90 16 11 C -0.11 -1.67 5.92 -26.73 -0.16 -1.83 16 12 C -0.14 -2.44 5.50 -26.73 -0.15 -2.59 16 13 C 0.18 3.62 2.77 -67.93 -0.19 3.43 16 14 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 15 N -0.72 -18.04 5.12 -53.43 -0.27 -18.31 16 16 C -0.23 -6.50 9.93 -15.06 -0.15 -6.65 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 19 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 20 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 C -0.13 -2.12 4.86 -26.73 -0.13 -2.25 16 25 C -0.11 -1.38 6.34 -105.05 -0.67 -2.04 16 26 C -0.04 -0.45 9.87 -39.77 -0.39 -0.85 16 27 C -0.14 -1.18 9.98 -39.89 -0.40 -1.57 16 28 C -0.08 -0.59 9.96 -39.90 -0.40 -0.98 16 29 C -0.12 -0.92 9.94 -39.81 -0.40 -1.31 16 30 C 0.06 0.66 6.85 -84.22 -0.58 0.08 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.23 8.09 -51.93 -0.42 -0.19 16 33 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.40 4.93 8.34 -40.82 -0.34 4.59 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 42 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.14 1.58 7.65 -52.49 -0.40 1.18 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 48 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -33.99 396.43 -10.00 -43.99 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.34 Total: 10.33 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -4.03 Total: -7.47 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: 0.32 Total: -61.30 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.99 -10.00 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981471279.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.376 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds