Wall clock time and date at job start Wed Apr 1 2020 04:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28386 * 124.37569 * 2 1 4 4 C 1.31573 * 111.96836 * 180.21622 * 3 2 1 5 5 C 1.47389 * 126.82231 * 179.84550 * 4 3 2 6 6 O 1.21613 * 119.99935 * 179.68582 * 5 4 3 7 7 N 1.34777 * 120.00041 * 359.41185 * 5 4 3 8 8 C 1.46499 * 120.00195 * 180.27822 * 7 5 4 9 9 H 1.09001 * 109.47173 * 34.99451 * 8 7 5 10 10 C 1.52997 * 109.46898 * 274.99732 * 8 7 5 11 11 C 1.53000 * 109.47350 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46939 * 59.99752 * 11 10 8 13 13 C 1.52997 * 109.47302 * 300.00277 * 12 11 10 14 14 H 1.09002 * 109.47107 * 300.00417 * 13 12 11 15 15 N 1.46496 * 109.47126 * 180.02562 * 13 12 11 16 16 C 1.36937 * 120.00259 * 84.99935 * 15 13 12 17 17 H 1.07998 * 119.99918 * 0.02562 * 16 15 13 18 18 C 1.38810 * 119.99862 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00309 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99680 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47032 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 120.00090 * 20 18 16 23 23 H 1.48500 * 109.47363 * 240.00337 * 20 18 16 24 24 C 1.52988 * 109.47442 * 154.99623 * 8 7 5 25 25 C 1.46879 * 106.35050 * 359.58339 * 4 3 2 26 26 C 1.39193 * 135.56027 * 180.24583 * 25 4 3 27 27 C 1.36721 * 119.51524 * 179.97438 * 26 25 4 28 28 C 1.38903 * 120.51567 * 359.97438 * 27 26 25 29 29 C 1.36678 * 120.89660 * 0.03198 * 28 27 26 30 30 C 1.37053 * 124.37294 * 179.74817 * 2 1 3 31 31 H 1.09005 * 109.47032 * 270.24828 * 1 2 3 32 32 H 1.08992 * 109.47435 * 30.25002 * 1 2 3 33 33 H 1.09002 * 109.47283 * 150.25515 * 1 2 3 34 34 H 0.97000 * 119.99736 * 0.27094 * 7 5 4 35 35 H 1.08993 * 109.47268 * 299.99871 * 10 8 7 36 36 H 1.09006 * 109.47495 * 60.00085 * 10 8 7 37 37 H 1.09001 * 109.47157 * 299.99986 * 11 10 8 38 38 H 1.08998 * 109.47187 * 179.97438 * 11 10 8 39 39 H 1.08998 * 109.46918 * 180.02562 * 12 11 10 40 40 H 1.08993 * 109.46833 * 60.00389 * 12 11 10 41 41 H 0.96998 * 119.99647 * 265.00047 * 15 13 12 42 42 H 0.97000 * 120.00069 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47434 * 300.00193 * 24 8 7 44 44 H 1.09002 * 109.47453 * 60.00156 * 24 8 7 45 45 H 1.08008 * 120.24651 * 0.02562 * 26 25 4 46 46 H 1.07999 * 119.74220 * 179.97438 * 27 26 25 47 47 H 1.08004 * 119.54988 * 179.97438 * 28 27 26 48 48 H 1.08005 * 120.10611 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1898 1.0596 0.0000 4 6 3.4748 0.7769 -0.0046 5 6 4.5910 1.7394 -0.0092 6 8 5.7393 1.3389 -0.0075 7 7 4.3392 3.0634 -0.0209 8 6 5.4486 4.0201 -0.0317 9 1 6.2725 3.6144 -0.6188 10 6 5.9194 4.2711 1.4023 11 6 7.0785 5.2697 1.3911 12 6 6.6105 6.5873 0.7699 13 6 6.1397 6.3363 -0.6641 14 1 6.9635 5.9301 -1.2511 15 7 5.6922 7.5980 -1.2591 16 6 6.6006 8.4393 -1.8441 17 1 7.6468 8.1725 -1.8672 18 6 6.1764 9.6345 -2.4083 19 7 4.9011 9.9590 -2.3815 20 14 7.4156 10.7825 -3.2058 21 1 8.7741 10.1912 -3.1055 22 1 7.0639 10.9742 -4.6358 23 1 7.3939 12.0945 -2.5105 24 6 4.9801 5.3374 -0.6526 25 6 3.5759 -0.6884 0.0022 26 6 4.6165 -1.6128 0.0061 27 6 4.3299 -2.9496 0.0130 28 6 3.0120 -3.3884 0.0167 29 6 1.9756 -2.4973 0.0128 30 6 2.2387 -1.1312 0.0050 31 1 -0.3633 0.0045 1.0277 32 1 -0.3634 0.8876 -0.5177 33 1 -0.3634 -0.8923 -0.5099 34 1 3.4233 3.3828 -0.0224 35 1 5.0956 4.6768 1.9894 36 1 6.2533 3.3325 1.8447 37 1 7.9023 4.8637 0.8041 38 1 7.4136 5.4489 2.4127 39 1 7.4364 7.2986 0.7615 40 1 5.7868 6.9934 1.3569 41 1 4.7525 7.8374 -1.2386 42 1 4.6048 10.7944 -2.7754 43 1 4.6447 5.1586 -1.6742 44 1 4.1563 5.7432 -0.0655 45 1 5.6429 -1.2765 0.0046 46 1 5.1345 -3.6700 0.0156 47 1 2.8034 -4.4481 0.0217 48 1 0.9557 -2.8526 0.0153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981471280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:16 Heat of formation + Delta-G solvation = 34.382657 kcal Electronic energy + Delta-G solvation = -28996.044945 eV Core-core repulsion = 25051.030728 eV Total energy + Delta-G solvation = -3945.014217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.52281 -40.95971 -39.21077 -38.74848 -36.25477 -34.96623 -34.48699 -32.93373 -31.52900 -31.25589 -30.72927 -29.51404 -28.04270 -25.72608 -24.98292 -23.89608 -23.17750 -23.06538 -22.15255 -21.28959 -20.66254 -19.32212 -18.80082 -18.25558 -17.39503 -17.37123 -17.03519 -16.46102 -16.19111 -16.05954 -15.79807 -15.44359 -15.16091 -15.07924 -15.01585 -14.92129 -14.58102 -14.20518 -13.93708 -13.59658 -13.56801 -13.41557 -12.93695 -12.90783 -12.85878 -12.83988 -12.27791 -12.21314 -12.16610 -12.02835 -11.99021 -11.97615 -11.66524 -11.57400 -11.40081 -11.04213 -11.01157 -10.87864 -10.14042 -9.78553 -8.99922 -8.98750 -7.93676 -5.21598 -0.23287 0.35620 0.83578 1.37418 1.47339 1.47615 1.57775 2.01332 2.18663 2.56690 2.80458 3.14887 3.39655 3.40916 3.60841 3.70176 3.85277 4.03667 4.05982 4.12741 4.25471 4.30340 4.33995 4.37754 4.40720 4.43567 4.49754 4.52816 4.56909 4.64712 4.66499 4.75659 4.76897 4.99685 5.02655 5.09923 5.16509 5.21373 5.21940 5.35065 5.40895 5.46331 5.50575 5.53359 5.57191 5.65509 5.70441 5.97282 6.28953 6.38083 6.76417 7.09028 7.35123 8.10618 8.34598 9.30011 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019466 B = 0.002089 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.057743 B =13400.803607 C =14027.679031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.309 5.309 3 N -0.211 5.211 4 C -0.037 4.037 5 C 0.606 3.394 6 O -0.563 6.563 7 N -0.701 5.701 8 C 0.159 3.841 9 H 0.075 0.925 10 C -0.116 4.116 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.178 3.822 14 H 0.039 0.961 15 N -0.736 5.736 16 C -0.234 4.234 17 H 0.074 0.926 18 C -0.078 4.078 19 N -0.969 5.969 20 Si 0.970 3.030 21 H -0.267 1.267 22 H -0.294 1.294 23 H -0.294 1.294 24 C -0.115 4.115 25 C -0.138 4.138 26 C -0.076 4.076 27 C -0.132 4.132 28 C -0.082 4.082 29 C -0.111 4.111 30 C 0.049 3.951 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.412 0.588 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.120 0.880 46 H 0.153 0.847 47 H 0.170 0.830 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.750 -30.489 8.691 33.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.103 5.103 3 N -0.043 5.043 4 C -0.205 4.205 5 C 0.391 3.609 6 O -0.440 6.440 7 N -0.351 5.351 8 C 0.055 3.945 9 H 0.093 0.907 10 C -0.155 4.155 11 C -0.143 4.143 12 C -0.167 4.167 13 C 0.069 3.931 14 H 0.057 0.943 15 N -0.376 5.376 16 C -0.366 4.366 17 H 0.092 0.908 18 C -0.270 4.270 19 N -0.620 5.620 20 Si 0.799 3.201 21 H -0.192 1.192 22 H -0.222 1.222 23 H -0.221 1.221 24 C -0.154 4.154 25 C -0.145 4.145 26 C -0.097 4.097 27 C -0.151 4.151 28 C -0.103 4.103 29 C -0.132 4.132 30 C -0.063 4.063 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.140 0.860 34 H 0.249 0.751 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.205 0.795 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.138 0.862 46 H 0.171 0.829 47 H 0.187 0.813 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.680 -29.787 8.610 32.794 hybrid contribution 0.357 1.030 -0.605 1.247 sum -10.323 -28.757 8.005 31.585 Atomic orbital electron populations 1.22575 0.70154 1.07168 1.05955 1.45637 1.08639 1.00282 1.55781 1.72795 1.03541 1.15120 1.12825 1.22587 0.90440 0.92885 1.14598 1.16853 0.86408 0.81765 0.75856 1.90757 1.21831 1.79343 1.52080 1.45863 1.11072 1.04614 1.73600 1.20857 0.88785 0.87551 0.97353 0.90699 1.21820 0.98934 0.99278 0.95472 1.21410 0.97411 0.94157 1.01359 1.22095 1.00302 0.97007 0.97249 1.20311 0.94640 0.85418 0.92717 0.94308 1.42589 1.07233 1.19506 1.68225 1.19632 0.90791 0.98721 1.27463 0.90828 1.25523 0.97818 1.00231 1.03400 1.69815 1.14977 1.24908 1.52346 0.85119 0.78810 0.78723 0.77422 1.19169 1.22165 1.22076 1.21884 0.99030 0.93653 1.00783 1.19732 0.94820 0.91554 1.08416 1.20473 0.98063 0.93013 0.98106 1.21221 0.98581 0.94478 1.00770 1.21224 0.91212 1.01332 0.96503 1.20252 1.02249 0.86892 1.03812 1.19520 0.89687 0.91309 1.05791 0.88272 0.87880 0.85979 0.75137 0.90978 0.91902 0.92035 0.90383 0.93700 0.92856 0.79496 0.94113 0.92220 0.90803 0.86171 0.82929 0.81271 0.81865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 11.24 127.77 1.44 1.99 16 2 N -0.31 -5.63 3.74 -361.15 -1.35 -6.98 16 3 N -0.21 -5.10 11.52 -44.89 -0.52 -5.62 16 4 C -0.04 -1.05 7.32 43.86 0.32 -0.73 16 5 C 0.61 18.97 7.78 86.65 0.67 19.65 16 6 O -0.56 -20.58 16.06 -4.07 -0.07 -20.64 16 7 N -0.70 -19.64 5.07 -445.86 -2.26 -21.90 16 8 C 0.16 4.77 2.45 44.99 0.11 4.88 16 9 H 0.07 2.51 7.58 -2.39 -0.02 2.49 16 10 C -0.12 -3.21 5.49 30.59 0.17 -3.04 16 11 C -0.10 -2.98 5.92 30.60 0.18 -2.80 16 12 C -0.13 -4.50 5.50 30.59 0.17 -4.34 16 13 C 0.18 7.14 2.77 45.01 0.12 7.26 16 14 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 15 N -0.74 -37.46 5.12 -322.87 -1.65 -39.11 16 16 C -0.23 -13.17 9.93 84.03 0.83 -12.34 16 17 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 18 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 19 N -0.97 -59.82 13.06 21.65 0.28 -59.54 16 20 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 C -0.11 -3.83 4.86 30.61 0.15 -3.68 16 25 C -0.14 -3.54 6.34 -20.15 -0.13 -3.67 16 26 C -0.08 -1.74 9.87 22.14 0.22 -1.52 16 27 C -0.13 -1.94 9.98 22.07 0.22 -1.72 16 28 C -0.08 -0.84 9.96 22.06 0.22 -0.62 16 29 C -0.11 -1.28 9.94 22.12 0.22 -1.06 16 30 C 0.05 0.93 6.85 39.18 0.27 1.20 16 31 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.12 0.13 8.10 -2.39 -0.02 0.11 16 34 H 0.41 10.22 8.34 -92.71 -0.77 9.44 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 41 H 0.37 20.23 7.80 -92.71 -0.72 19.51 16 42 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.12 3.04 7.65 -2.91 -0.02 3.02 16 46 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 47 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 48 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -76.48 396.44 1.60 -74.88 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.51 Total: 34.53 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.65 Total: -4.58 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -5.50 Total: -133.16 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.07 Total: -20.64 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -76.48 1.60 -74.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981471280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.260 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds