Wall clock time and date at job start Wed Apr 1 2020 03:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.39872 * 125.46101 * 2 1 4 4 C 1.30246 * 110.08572 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.10722 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47397 * 89.97161 * 5 4 3 7 7 O 1.21279 * 119.99819 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00141 * 179.97438 * 6 5 4 9 9 C 1.46492 * 119.99947 * 179.97438 * 8 6 5 10 10 C 1.53042 * 109.46253 * 275.02768 * 9 8 6 11 11 C 1.53194 * 109.31417 * 178.60148 * 10 9 8 12 12 N 1.46927 * 108.76242 * 54.65669 * 11 10 9 13 13 C 1.36935 * 120.63195 * 126.36342 * 12 11 10 14 14 H 1.08007 * 119.99836 * 331.85959 * 13 12 11 15 15 C 1.38810 * 120.00402 * 151.85309 * 13 12 11 16 16 N 1.31618 * 120.00091 * 343.07650 * 15 13 12 17 17 Si 1.86802 * 120.00260 * 163.07345 * 15 13 12 18 18 H 1.48501 * 109.46883 * 59.99872 * 17 15 13 19 19 H 1.48495 * 109.47097 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46857 * 300.00486 * 17 15 13 21 21 C 1.46925 * 118.74074 * 306.37969 * 12 11 10 22 22 C 1.53046 * 109.45981 * 154.97473 * 9 8 6 23 23 C 1.45925 * 107.78463 * 359.79706 * 4 3 2 24 24 C 1.39945 * 134.02878 * 179.52273 * 23 4 3 25 25 C 1.36466 * 119.63807 * 180.36455 * 24 23 4 26 26 C 1.38961 * 120.62567 * 0.27724 * 25 24 23 27 27 C 1.36588 * 120.81691 * 359.97438 * 26 25 24 28 28 C 1.37033 * 125.46239 * 179.97438 * 2 1 3 29 29 H 1.09009 * 109.47060 * 270.02255 * 1 2 3 30 30 H 1.08999 * 109.47531 * 30.02228 * 1 2 3 31 31 H 1.09001 * 109.47247 * 150.02633 * 1 2 3 32 32 H 1.09000 * 109.47126 * 209.97844 * 5 4 3 33 33 H 1.09003 * 109.46966 * 329.96962 * 5 4 3 34 34 H 0.97004 * 119.99657 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.46380 * 35.00133 * 9 8 6 36 36 H 1.08999 * 109.49866 * 298.56825 * 10 9 8 37 37 H 1.09002 * 109.49555 * 58.66413 * 10 9 8 38 38 H 1.08997 * 109.60042 * 294.87034 * 11 10 9 39 39 H 1.09000 * 109.70205 * 174.50516 * 11 10 9 40 40 H 0.96994 * 120.00690 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.58968 * 293.82825 * 21 12 11 42 42 H 1.09000 * 109.70489 * 173.46472 * 21 12 11 43 43 H 1.09001 * 109.49547 * 301.33693 * 22 9 8 44 44 H 1.08994 * 109.49493 * 61.40084 * 22 9 8 45 45 H 1.08000 * 120.18172 * 0.64283 * 24 23 4 46 46 H 1.07998 * 119.68918 * 180.25022 * 25 24 23 47 47 H 1.08002 * 119.59309 * 179.97438 * 26 25 24 48 48 H 1.08008 * 120.07631 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2764 1.1393 0.0000 4 6 3.5322 0.7939 0.0005 5 6 4.7114 1.7324 0.0013 6 6 5.1033 2.0456 1.4223 7 8 4.4857 1.5554 2.3437 8 7 6.1402 2.8705 1.6692 9 6 6.5209 3.1753 3.0505 10 6 5.6654 4.3324 3.5717 11 6 6.0419 4.6253 5.0275 12 7 7.4897 4.8642 5.1022 13 6 7.9796 6.0059 5.6781 14 1 7.3897 6.9106 5.6703 15 6 9.2343 6.0006 6.2718 16 7 9.8106 4.8588 6.5824 17 14 10.1050 7.6140 6.6300 18 1 9.2752 8.4302 7.5521 19 1 11.4205 7.3371 7.2608 20 1 10.3117 8.3572 5.3610 21 6 8.4019 3.8550 4.5471 22 6 7.9987 3.5706 3.0968 23 6 3.5936 -0.6640 0.0059 24 6 4.6397 -1.5935 0.0003 25 6 4.3564 -2.9284 0.0006 26 6 3.0397 -3.3727 0.0007 27 6 2.0017 -2.4849 0.0009 28 6 2.2600 -1.1161 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 5.5503 1.2623 -0.5119 33 1 4.4418 2.6549 -0.5130 34 1 6.6340 3.2628 0.9321 35 1 6.3605 2.2957 3.6740 36 1 5.8441 5.2194 2.9640 37 1 4.6116 4.0592 3.5166 38 1 5.7798 3.7712 5.6519 39 1 5.5072 5.5094 5.3746 40 1 10.6874 4.8549 6.9970 41 1 8.3322 2.9381 5.1323 42 1 9.4252 4.2295 4.5751 43 1 8.6058 2.7551 2.7037 44 1 8.1552 4.4645 2.4932 45 1 5.6657 -1.2563 0.0003 46 1 5.1631 -3.6465 0.0005 47 1 2.8345 -4.4330 0.0005 48 1 0.9829 -2.8433 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002818995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:46 Heat of formation + Delta-G solvation = 72.092052 kcal Electronic energy + Delta-G solvation = -29180.829699 eV Core-core repulsion = 25237.450684 eV Total energy + Delta-G solvation = -3943.379015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.49823 -39.61926 -37.47758 -37.24529 -34.46801 -34.19984 -32.20687 -30.72901 -30.57364 -30.04124 -29.89085 -29.05010 -25.97566 -24.83428 -23.17429 -22.36429 -22.15328 -21.91013 -20.55557 -19.80549 -19.14771 -17.30392 -17.21310 -17.06070 -16.54666 -15.74334 -15.57003 -15.41582 -15.12214 -14.77219 -14.28821 -14.19174 -13.90325 -13.64841 -13.53618 -13.46660 -13.13165 -13.01944 -12.86910 -12.75327 -12.32970 -12.22108 -12.01707 -11.84040 -11.44338 -11.26121 -11.10644 -10.85367 -10.81943 -10.70551 -10.48049 -10.26790 -10.18695 -10.02778 -9.85004 -9.66986 -9.44129 -8.83495 -8.68882 -8.44236 -8.02504 -6.67105 -5.78456 -3.20689 0.76696 1.33058 2.14280 2.25515 2.79135 3.37942 3.41348 3.44680 3.45904 3.66192 4.11207 4.26995 4.41208 4.50442 4.72927 4.77709 4.92398 4.92908 4.99031 5.14427 5.15105 5.18454 5.30439 5.35308 5.39869 5.45885 5.53060 5.60321 5.62086 5.79826 5.90295 6.09800 6.13539 6.27735 6.29442 6.32887 6.36047 6.54935 6.59311 6.61200 6.63028 6.82073 6.85776 6.94186 7.01624 7.32924 7.47803 7.60584 7.73658 7.80790 8.41863 8.45869 9.21919 9.85079 10.42388 11.30498 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.023745 B = 0.002099 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.920080 B =13334.785594 C =13880.650598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.409 5.409 3 N -0.240 5.240 4 C 0.123 3.877 5 C -0.064 4.064 6 C 0.514 3.486 7 O -0.530 6.530 8 N -0.723 5.723 9 C 0.152 3.848 10 C -0.139 4.139 11 C 0.148 3.852 12 N -0.593 5.593 13 C -0.252 4.252 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.904 5.904 17 Si 0.903 3.097 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.284 1.284 21 C 0.174 3.826 22 C -0.146 4.146 23 C -0.164 4.164 24 C -0.036 4.036 25 C -0.162 4.162 26 C -0.071 4.071 27 C -0.144 4.144 28 C 0.128 3.872 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.396 0.604 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.255 0.745 41 H 0.020 0.980 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 -14.307 -19.322 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.197 5.197 3 N -0.053 5.053 4 C -0.055 4.055 5 C -0.106 4.106 6 C 0.298 3.702 7 O -0.406 6.406 8 N -0.374 5.374 9 C 0.049 3.951 10 C -0.179 4.179 11 C 0.021 3.979 12 N -0.315 5.315 13 C -0.382 4.382 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.548 5.548 17 Si 0.733 3.267 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.048 3.952 22 C -0.186 4.186 23 C -0.171 4.171 24 C -0.056 4.056 25 C -0.182 4.182 26 C -0.092 4.092 27 C -0.166 4.166 28 C 0.014 3.986 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.230 0.770 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.145 0.855 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.535 -13.687 -18.539 27.245 hybrid contribution 1.049 0.334 -0.081 1.103 sum -13.486 -13.354 -18.620 26.588 Atomic orbital electron populations 1.21725 0.74133 1.03988 1.03090 1.48042 1.05706 1.00993 1.64953 1.76530 1.01977 1.08420 1.18324 1.22622 0.92268 0.91482 0.99178 1.20078 0.94577 0.99389 0.96572 1.20204 0.80538 0.79072 0.90359 1.90747 1.52274 1.51537 1.46043 1.46294 1.32974 1.48245 1.09905 1.21037 0.95218 0.98209 0.80668 1.22368 0.98318 0.97505 0.99719 1.20871 0.86610 0.98419 0.92042 1.44083 0.99235 1.21241 1.66977 1.19151 1.01051 0.87984 1.29994 0.91713 1.25054 0.99858 0.96637 0.98129 1.70013 1.16551 1.24040 1.44213 0.86360 0.78912 0.83419 0.78022 1.20887 1.21647 1.21053 1.20739 0.96331 0.91592 0.86578 1.22533 0.93211 1.00090 1.02743 1.19690 0.93214 0.92521 1.11713 1.20363 0.97823 0.92102 0.95311 1.20647 0.96724 0.95370 1.05455 1.20698 0.92273 0.99236 0.96981 1.19778 0.99929 0.88817 1.08033 1.18813 0.90574 0.89594 0.99651 0.91225 0.89458 0.89910 0.86678 0.86896 0.77012 0.90082 0.92311 0.92806 0.96250 0.92600 0.93549 0.96149 0.89031 0.92712 0.92149 0.85591 0.85594 0.85458 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.88 11.40 59.84 0.68 1.56 16 2 N -0.41 -5.12 4.05 -65.47 -0.27 -5.38 16 3 N -0.24 -3.47 12.40 34.84 0.43 -3.04 16 4 C 0.12 1.65 5.93 -80.19 -0.48 1.17 16 5 C -0.06 -0.68 6.29 -29.03 -0.18 -0.86 16 6 C 0.51 7.45 7.79 -10.99 -0.09 7.37 16 7 O -0.53 -10.27 15.70 5.56 0.09 -10.18 16 8 N -0.72 -9.79 5.08 -53.77 -0.27 -10.06 16 9 C 0.15 2.64 2.42 -67.89 -0.16 2.48 16 10 C -0.14 -2.59 5.65 -26.61 -0.15 -2.74 16 11 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 12 N -0.59 -14.91 2.99 -172.32 -0.52 -15.43 16 13 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 14 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 15 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 16 N -0.90 -26.13 11.19 55.49 0.62 -25.51 16 17 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 22 C -0.15 -2.63 5.55 -26.61 -0.15 -2.78 16 23 C -0.16 -2.13 6.33 -105.21 -0.67 -2.80 16 24 C -0.04 -0.38 10.07 -39.58 -0.40 -0.78 16 25 C -0.16 -1.48 9.97 -39.95 -0.40 -1.88 16 26 C -0.07 -0.61 9.96 -39.91 -0.40 -1.01 16 27 C -0.14 -1.38 9.97 -39.79 -0.40 -1.78 16 28 C 0.13 1.59 6.87 -84.17 -0.58 1.01 16 29 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 35 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 46 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 48 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 394.98 15.07 5.95 5.95 Total: -1.00 -35.78 394.98 -9.98 -45.77 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.36 Total: 2.18 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -3.63 Total: -0.86 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.00 Total: -59.41 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.78 -9.98 -45.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002818995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.861 kcal (2) G-P(sol) polarization free energy of solvation -35.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds