Wall clock time and date at job start Wed Apr 1 2020 03:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.39872 * 125.46101 * 2 1 4 4 C 1.30246 * 110.08572 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.10722 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47397 * 89.97161 * 5 4 3 7 7 O 1.21279 * 119.99819 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00141 * 179.97438 * 6 5 4 9 9 C 1.46492 * 119.99947 * 179.97438 * 8 6 5 10 10 C 1.53042 * 109.46253 * 275.02768 * 9 8 6 11 11 C 1.53194 * 109.31417 * 178.60148 * 10 9 8 12 12 N 1.46927 * 108.76242 * 54.65669 * 11 10 9 13 13 C 1.36935 * 120.63195 * 126.36342 * 12 11 10 14 14 H 1.08007 * 119.99836 * 331.85959 * 13 12 11 15 15 C 1.38810 * 120.00402 * 151.85309 * 13 12 11 16 16 N 1.31618 * 120.00091 * 343.07650 * 15 13 12 17 17 Si 1.86802 * 120.00260 * 163.07345 * 15 13 12 18 18 H 1.48501 * 109.46883 * 59.99872 * 17 15 13 19 19 H 1.48495 * 109.47097 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46857 * 300.00486 * 17 15 13 21 21 C 1.46925 * 118.74074 * 306.37969 * 12 11 10 22 22 C 1.53046 * 109.45981 * 154.97473 * 9 8 6 23 23 C 1.45925 * 107.78463 * 359.79706 * 4 3 2 24 24 C 1.39945 * 134.02878 * 179.52273 * 23 4 3 25 25 C 1.36466 * 119.63807 * 180.36455 * 24 23 4 26 26 C 1.38961 * 120.62567 * 0.27724 * 25 24 23 27 27 C 1.36588 * 120.81691 * 359.97438 * 26 25 24 28 28 C 1.37033 * 125.46239 * 179.97438 * 2 1 3 29 29 H 1.09009 * 109.47060 * 270.02255 * 1 2 3 30 30 H 1.08999 * 109.47531 * 30.02228 * 1 2 3 31 31 H 1.09001 * 109.47247 * 150.02633 * 1 2 3 32 32 H 1.09000 * 109.47126 * 209.97844 * 5 4 3 33 33 H 1.09003 * 109.46966 * 329.96962 * 5 4 3 34 34 H 0.97004 * 119.99657 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.46380 * 35.00133 * 9 8 6 36 36 H 1.08999 * 109.49866 * 298.56825 * 10 9 8 37 37 H 1.09002 * 109.49555 * 58.66413 * 10 9 8 38 38 H 1.08997 * 109.60042 * 294.87034 * 11 10 9 39 39 H 1.09000 * 109.70205 * 174.50516 * 11 10 9 40 40 H 0.96994 * 120.00690 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.58968 * 293.82825 * 21 12 11 42 42 H 1.09000 * 109.70489 * 173.46472 * 21 12 11 43 43 H 1.09001 * 109.49547 * 301.33693 * 22 9 8 44 44 H 1.08994 * 109.49493 * 61.40084 * 22 9 8 45 45 H 1.08000 * 120.18172 * 0.64283 * 24 23 4 46 46 H 1.07998 * 119.68918 * 180.25022 * 25 24 23 47 47 H 1.08002 * 119.59309 * 179.97438 * 26 25 24 48 48 H 1.08008 * 120.07631 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2764 1.1393 0.0000 4 6 3.5322 0.7939 0.0005 5 6 4.7114 1.7324 0.0013 6 6 5.1033 2.0456 1.4223 7 8 4.4857 1.5554 2.3437 8 7 6.1402 2.8705 1.6692 9 6 6.5209 3.1753 3.0505 10 6 5.6654 4.3324 3.5717 11 6 6.0419 4.6253 5.0275 12 7 7.4897 4.8642 5.1022 13 6 7.9796 6.0059 5.6781 14 1 7.3897 6.9106 5.6703 15 6 9.2343 6.0006 6.2718 16 7 9.8106 4.8588 6.5824 17 14 10.1050 7.6140 6.6300 18 1 9.2752 8.4302 7.5521 19 1 11.4205 7.3371 7.2608 20 1 10.3117 8.3572 5.3610 21 6 8.4019 3.8550 4.5471 22 6 7.9987 3.5706 3.0968 23 6 3.5936 -0.6640 0.0059 24 6 4.6397 -1.5935 0.0003 25 6 4.3564 -2.9284 0.0006 26 6 3.0397 -3.3727 0.0007 27 6 2.0017 -2.4849 0.0009 28 6 2.2600 -1.1161 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 5.5503 1.2623 -0.5119 33 1 4.4418 2.6549 -0.5130 34 1 6.6340 3.2628 0.9321 35 1 6.3605 2.2957 3.6740 36 1 5.8441 5.2194 2.9640 37 1 4.6116 4.0592 3.5166 38 1 5.7798 3.7712 5.6519 39 1 5.5072 5.5094 5.3746 40 1 10.6874 4.8549 6.9970 41 1 8.3322 2.9381 5.1323 42 1 9.4252 4.2295 4.5751 43 1 8.6058 2.7551 2.7037 44 1 8.1552 4.4645 2.4932 45 1 5.6657 -1.2563 0.0003 46 1 5.1631 -3.6465 0.0005 47 1 2.8345 -4.4330 0.0005 48 1 0.9829 -2.8433 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001002818995.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:45 Heat of formation + Delta-G solvation = 48.837654 kcal Electronic energy + Delta-G solvation = -29181.838086 eV Core-core repulsion = 25237.450684 eV Total energy + Delta-G solvation = -3944.387401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.30676 -40.87764 -38.96701 -38.11294 -36.00897 -35.09282 -33.95499 -32.06030 -31.54020 -31.31157 -30.81082 -30.42467 -27.13212 -26.34924 -24.11501 -23.89104 -23.63865 -22.82388 -21.73201 -21.13908 -20.44095 -18.88292 -18.03570 -17.93975 -17.89192 -17.10972 -16.70535 -16.40283 -16.22757 -16.07342 -15.61977 -15.36155 -15.06003 -14.95448 -14.88780 -14.69008 -14.44342 -14.22398 -13.99999 -13.83631 -13.52580 -13.25274 -13.08106 -12.99673 -12.72443 -12.61606 -12.57703 -12.54723 -12.22407 -12.03666 -11.95821 -11.88324 -11.68116 -11.55693 -11.35875 -11.08210 -10.73148 -10.55096 -9.99047 -9.62949 -8.79828 -8.71040 -7.87820 -5.33967 -0.00040 0.57809 1.32065 1.46963 1.49132 1.50820 1.58193 1.67097 2.31554 2.52162 2.88536 3.27818 3.33117 3.49716 3.64648 3.70815 3.84786 3.96278 4.06676 4.12829 4.19176 4.32713 4.33973 4.37441 4.45769 4.46548 4.48215 4.57920 4.63489 4.63995 4.66893 4.82956 4.85920 4.95715 5.03287 5.04559 5.09873 5.16181 5.28548 5.41025 5.47419 5.53890 5.57369 5.62225 5.64313 5.71932 5.93065 6.13891 6.38661 6.61799 6.64238 7.14311 7.33006 7.83380 8.36721 9.19161 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.023745 B = 0.002099 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.920080 B =13334.785594 C =13880.650598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.418 5.418 3 N -0.277 5.277 4 C 0.107 3.893 5 C -0.055 4.055 6 C 0.516 3.484 7 O -0.583 6.583 8 N -0.707 5.707 9 C 0.164 3.836 10 C -0.123 4.123 11 C 0.145 3.855 12 N -0.608 5.608 13 C -0.266 4.266 14 H 0.066 0.934 15 C -0.049 4.049 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.274 1.274 21 C 0.177 3.823 22 C -0.127 4.127 23 C -0.194 4.194 24 C -0.053 4.053 25 C -0.164 4.164 26 C -0.069 4.069 27 C -0.151 4.151 28 C 0.104 3.896 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.418 0.582 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.003 0.997 39 H 0.056 0.944 40 H 0.251 0.749 41 H -0.008 1.008 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.139 0.861 46 H 0.151 0.849 47 H 0.161 0.839 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.258 -14.901 -21.717 29.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.207 5.207 3 N -0.090 5.090 4 C -0.071 4.071 5 C -0.096 4.096 6 C 0.303 3.697 7 O -0.463 6.463 8 N -0.359 5.359 9 C 0.059 3.941 10 C -0.164 4.164 11 C 0.019 3.981 12 N -0.332 5.332 13 C -0.396 4.396 14 H 0.084 0.916 15 C -0.245 4.245 16 N -0.581 5.581 17 Si 0.798 3.202 18 H -0.204 1.204 19 H -0.220 1.220 20 H -0.200 1.200 21 C 0.051 3.949 22 C -0.166 4.166 23 C -0.202 4.202 24 C -0.074 4.074 25 C -0.183 4.183 26 C -0.090 4.090 27 C -0.173 4.173 28 C -0.010 4.010 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.171 0.829 33 H 0.155 0.845 34 H 0.255 0.745 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.010 0.990 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.157 0.843 46 H 0.169 0.831 47 H 0.178 0.822 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.612 -14.267 -20.992 29.287 hybrid contribution 0.990 0.399 0.716 1.285 sum -13.623 -13.868 -20.276 28.089 Atomic orbital electron populations 1.22015 0.72305 1.05704 1.03640 1.48361 1.06848 1.00645 1.64857 1.76408 1.02883 1.10099 1.19640 1.23053 0.92633 0.92389 0.98999 1.20168 0.95070 1.00483 0.93835 1.20855 0.79524 0.77830 0.91519 1.90734 1.53992 1.53472 1.48082 1.45958 1.33057 1.48095 1.08794 1.20598 0.94537 0.96463 0.82518 1.22159 0.98384 0.98424 0.97392 1.20945 0.85228 0.97754 0.94221 1.44343 1.00512 1.21048 1.67313 1.19481 1.01390 0.88817 1.29874 0.91592 1.25833 1.00554 0.99762 0.98328 1.70177 1.16627 1.26067 1.45266 0.85305 0.77328 0.79532 0.78035 1.20414 1.21988 1.20001 1.20587 0.94949 0.89778 0.89574 1.22246 0.93838 1.01631 0.98908 1.20059 0.94310 0.92820 1.13011 1.20654 0.98136 0.92663 0.95897 1.21057 0.97942 0.95262 1.04027 1.21156 0.91768 1.00791 0.95241 1.20167 1.01664 0.87835 1.07605 1.19281 0.90730 0.90639 1.00383 0.91203 0.88857 0.87142 0.82870 0.84471 0.74467 0.92854 0.91234 0.92875 0.97925 0.92588 0.93953 0.98968 0.91710 0.90092 0.90860 0.84282 0.83112 0.82186 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.57 11.40 127.77 1.46 3.02 16 2 N -0.42 -10.43 4.05 -361.05 -1.46 -11.89 16 3 N -0.28 -8.06 12.40 -43.69 -0.54 -8.60 16 4 C 0.11 2.82 5.93 44.79 0.27 3.08 16 5 C -0.05 -1.04 6.29 29.10 0.18 -0.85 16 6 C 0.52 14.31 7.79 87.66 0.68 14.99 16 7 O -0.58 -22.82 15.70 -3.03 -0.05 -22.87 16 8 N -0.71 -17.62 5.08 -442.41 -2.25 -19.87 16 9 C 0.16 5.57 2.42 45.02 0.11 5.68 16 10 C -0.12 -4.55 5.65 30.67 0.17 -4.38 16 11 C 0.14 6.49 6.52 86.36 0.56 7.05 16 12 N -0.61 -31.17 2.99 -699.09 -2.09 -33.26 16 13 C -0.27 -14.72 9.58 84.03 0.81 -13.92 16 14 H 0.07 3.57 7.89 -2.91 -0.02 3.54 16 15 C -0.05 -2.75 4.92 84.86 0.42 -2.34 16 16 N -0.94 -55.38 11.19 21.65 0.24 -55.13 16 17 Si 0.97 44.61 29.59 68.60 2.03 46.64 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C 0.18 8.49 5.30 86.36 0.46 8.95 16 22 C -0.13 -4.41 5.55 30.67 0.17 -4.24 16 23 C -0.19 -4.96 6.33 -20.24 -0.13 -5.08 16 24 C -0.05 -1.08 10.07 22.27 0.22 -0.86 16 25 C -0.16 -2.62 9.97 22.03 0.22 -2.40 16 26 C -0.07 -1.00 9.96 22.06 0.22 -0.78 16 27 C -0.15 -2.65 9.97 22.14 0.22 -2.43 16 28 C 0.10 2.53 6.87 39.21 0.27 2.80 16 29 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 31 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.42 7.03 8.60 -92.71 -0.80 6.23 16 35 H 0.05 2.15 7.58 -2.39 -0.02 2.14 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.06 3.45 6.06 -2.39 -0.01 3.43 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 46 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 47 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 48 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -81.46 394.98 2.36 -79.09 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.17 Total: 17.59 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 6.31 Total: 8.29 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -6.10 Total: -128.75 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -81.46 2.36 -79.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002818995.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.932 kcal (2) G-P(sol) polarization free energy of solvation -81.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds