Wall clock time and date at job start Wed Apr 1 2020 03:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.39871 * 125.46365 * 2 1 4 4 C 1.30244 * 110.08478 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.10434 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46785 * 90.02911 * 5 4 3 7 7 O 1.21283 * 120.00196 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99930 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99778 * 180.27369 * 8 6 5 10 10 H 1.09000 * 109.50441 * 324.66392 * 9 8 6 11 11 C 1.53039 * 109.49536 * 204.56343 * 9 8 6 12 12 C 1.53042 * 109.53888 * 178.68928 * 11 9 8 13 13 C 1.53190 * 109.31676 * 61.36045 * 12 11 9 14 14 N 1.46924 * 108.77454 * 305.36969 * 13 12 11 15 15 C 1.36940 * 120.62867 * 233.62487 * 14 13 12 16 16 H 1.07994 * 119.99709 * 27.66214 * 15 14 13 17 17 C 1.38811 * 119.99980 * 207.66386 * 15 14 13 18 18 N 1.31621 * 120.00013 * 17.37493 * 17 15 14 19 19 Si 1.86800 * 119.99855 * 197.37361 * 17 15 14 20 20 H 1.48498 * 109.47101 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46912 * 119.99732 * 19 17 15 22 22 H 1.48499 * 109.46952 * 239.99624 * 19 17 15 23 23 C 1.46924 * 118.73959 * 53.60882 * 14 13 12 24 24 C 1.45922 * 107.78486 * 0.26254 * 4 3 2 25 25 C 1.39946 * 134.03038 * 179.71165 * 24 4 3 26 26 C 1.36461 * 119.64294 * 180.02562 * 25 24 4 27 27 C 1.38971 * 120.62121 * 0.02562 * 26 25 24 28 28 C 1.36596 * 120.82108 * 359.51018 * 27 26 25 29 29 C 1.37040 * 125.45835 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47038 * 90.02612 * 1 2 3 31 31 H 1.08995 * 109.47737 * 210.02598 * 1 2 3 32 32 H 1.08998 * 109.47248 * 330.02841 * 1 2 3 33 33 H 1.08999 * 109.47477 * 330.02618 * 5 4 3 34 34 H 1.09005 * 109.46862 * 210.02457 * 5 4 3 35 35 H 0.97000 * 119.99717 * 0.02562 * 8 6 5 36 36 H 1.08999 * 109.46211 * 298.70303 * 11 9 8 37 37 H 1.09001 * 109.46255 * 58.66190 * 11 9 8 38 38 H 1.09006 * 109.49318 * 301.40900 * 12 11 9 39 39 H 1.08997 * 109.52502 * 181.33855 * 12 11 9 40 40 H 1.08999 * 109.58663 * 185.57822 * 13 12 11 41 41 H 1.09003 * 109.58041 * 65.15508 * 13 12 11 42 42 H 0.97005 * 119.99705 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.58799 * 186.60126 * 23 14 13 44 44 H 1.08995 * 109.59247 * 66.17680 * 23 14 13 45 45 H 1.08007 * 120.17805 * 0.05061 * 25 24 4 46 46 H 1.07992 * 119.69205 * 179.97438 * 26 25 24 47 47 H 1.08004 * 119.58853 * 179.97438 * 27 26 25 48 48 H 1.07992 * 120.07963 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1392 0.0000 4 6 3.5323 0.7938 0.0005 5 6 4.7114 1.7323 0.0002 6 6 5.1045 2.0455 1.4209 7 8 4.4881 1.5546 2.3429 8 7 6.1416 2.8704 1.6669 9 6 6.5275 3.1701 3.0480 10 1 5.6358 3.2160 3.6732 11 6 7.2547 4.5159 3.0946 12 6 7.6294 4.8454 4.5414 13 6 8.5747 3.7662 5.0783 14 7 7.9405 2.4524 4.9035 15 6 7.7993 1.5990 5.9651 16 1 7.7214 1.9927 6.9677 17 6 7.7564 0.2280 5.7525 18 7 8.1847 -0.2752 4.6141 19 14 7.0909 -0.9029 7.0820 20 1 6.6772 -0.0952 8.2574 21 1 5.9195 -1.6491 6.5563 22 1 8.1476 -1.8636 7.4892 23 6 7.4605 2.0719 3.5680 24 6 3.5935 -0.6641 -0.0054 25 6 4.6397 -1.5937 -0.0127 26 6 4.3564 -2.9285 -0.0175 27 6 3.0396 -3.3727 -0.0158 28 6 2.0015 -2.4850 0.0008 29 6 2.2599 -1.1162 0.0005 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3634 0.8902 0.5134 33 1 4.4415 2.6548 -0.5139 34 1 5.5499 1.2620 -0.5135 35 1 6.6348 3.2627 0.9295 36 1 8.1591 4.4611 2.4888 37 1 6.6016 5.2953 2.7020 38 1 6.7275 4.8760 5.1528 39 1 8.1261 5.8149 4.5772 40 1 8.7659 3.9417 6.1370 41 1 9.5138 3.7951 4.5256 42 1 8.1543 -1.2333 4.4655 43 1 6.9164 1.1294 3.6302 44 1 8.3085 1.9626 2.8922 45 1 5.6657 -1.2563 -0.0141 46 1 5.1630 -3.6465 -0.0236 47 1 2.8344 -4.4331 -0.0201 48 1 0.9828 -2.8434 0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007342574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:47 Heat of formation + Delta-G solvation = 74.023890 kcal Electronic energy + Delta-G solvation = -30046.630649 eV Core-core repulsion = 26103.335405 eV Total energy + Delta-G solvation = -3943.295244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.27852 -39.34572 -37.33793 -37.09018 -34.17613 -33.95218 -32.63899 -30.59742 -30.37398 -29.93561 -29.74125 -28.38175 -25.62083 -25.22852 -22.97671 -22.33125 -22.02459 -21.75267 -20.32232 -19.61324 -19.08150 -17.05061 -16.93571 -16.77053 -16.67626 -15.50119 -15.41305 -15.19237 -14.99040 -14.54202 -14.06780 -14.01408 -13.97485 -13.61318 -13.38035 -13.22517 -13.05349 -12.93083 -12.68800 -12.41025 -12.28928 -12.04205 -11.84249 -11.80988 -11.61376 -11.02548 -10.98564 -10.71383 -10.68875 -10.62833 -10.44777 -10.19598 -9.97600 -9.92462 -9.90111 -9.48401 -9.29600 -8.60698 -8.48088 -8.39134 -7.80356 -6.61826 -5.72069 -3.14713 0.99320 1.56621 2.33721 2.46021 3.08798 3.44731 3.53354 3.54253 3.62203 3.89524 4.30778 4.50073 4.57687 4.62351 4.93417 5.00919 5.05453 5.14407 5.19464 5.29589 5.36011 5.39839 5.42239 5.44349 5.51416 5.58065 5.62571 5.67129 5.74999 5.84836 6.02737 6.11980 6.18245 6.35431 6.37242 6.45008 6.50718 6.54970 6.58750 6.73639 6.80846 6.86024 6.98254 7.00571 7.06879 7.34690 7.67448 7.77109 7.87178 7.98363 8.51984 8.71632 9.27154 9.91155 10.45666 11.35948 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010442 B = 0.003622 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.891687 B = 7729.144733 C = 9360.545829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.411 5.411 3 N -0.245 5.245 4 C 0.127 3.873 5 C -0.063 4.063 6 C 0.514 3.486 7 O -0.520 6.520 8 N -0.721 5.721 9 C 0.118 3.882 10 H 0.080 0.920 11 C -0.115 4.115 12 C -0.131 4.131 13 C 0.142 3.858 14 N -0.589 5.589 15 C -0.256 4.256 16 H 0.066 0.934 17 C 0.008 3.992 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.167 3.833 24 C -0.163 4.163 25 C -0.031 4.031 26 C -0.162 4.162 27 C -0.070 4.070 28 C -0.147 4.147 29 C 0.128 3.872 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.393 0.607 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.095 0.905 44 H 0.017 0.983 45 H 0.129 0.871 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.597 1.456 -15.275 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.199 5.199 3 N -0.057 5.057 4 C -0.052 4.052 5 C -0.105 4.105 6 C 0.297 3.703 7 O -0.395 6.395 8 N -0.372 5.372 9 C 0.013 3.987 10 H 0.098 0.902 11 C -0.153 4.153 12 C -0.171 4.171 13 C 0.016 3.984 14 N -0.312 5.312 15 C -0.385 4.385 16 H 0.084 0.916 17 C -0.191 4.191 18 N -0.542 5.542 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.217 1.217 23 C 0.040 3.960 24 C -0.170 4.170 25 C -0.051 4.051 26 C -0.181 4.181 27 C -0.091 4.091 28 C -0.169 4.169 29 C 0.014 3.986 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.226 0.774 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.113 0.887 44 H 0.035 0.965 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.094 1.909 -14.608 18.443 hybrid contribution 0.273 -1.128 0.313 1.202 sum -10.821 0.781 -14.295 17.946 Atomic orbital electron populations 1.21680 0.74349 1.04167 1.02555 1.47987 1.05564 1.01027 1.65347 1.76480 1.01965 1.08461 1.18827 1.22617 0.92211 0.91575 0.98765 1.20070 0.94581 0.99113 0.96726 1.20120 0.80588 0.79315 0.90263 1.90789 1.52791 1.50073 1.45843 1.46015 1.32841 1.48940 1.09430 1.21955 0.99524 0.96411 0.80860 0.90172 1.21668 0.99557 0.96114 0.98001 1.22005 1.00883 0.98799 0.95432 1.20953 0.92976 0.86008 0.98464 1.43975 1.66456 1.14342 1.06398 1.19181 1.44888 0.86872 0.87606 0.91629 1.24995 0.99880 0.97073 0.97169 1.70021 1.47828 1.11464 1.24864 0.86280 0.78580 0.80883 0.81388 1.20228 1.21446 1.21732 1.21093 0.93793 0.96033 0.85063 1.19686 0.93180 0.92551 1.11618 1.20418 0.98043 0.92108 0.94539 1.20659 0.96690 0.95466 1.05314 1.20696 0.92315 0.99155 0.96927 1.19739 0.99790 0.88826 1.08499 1.18800 0.90580 0.89560 0.99700 0.91506 0.89993 0.89560 0.87171 0.86669 0.77439 0.92234 0.93123 0.92186 0.92663 0.92679 0.96404 0.93745 0.88707 0.96515 0.85349 0.85544 0.85544 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.10 11.40 59.84 0.68 1.78 16 2 N -0.41 -6.04 4.05 -65.47 -0.27 -6.31 16 3 N -0.24 -4.05 12.40 34.84 0.43 -3.62 16 4 C 0.13 2.03 5.92 -80.19 -0.48 1.55 16 5 C -0.06 -0.82 6.30 -29.04 -0.18 -1.00 16 6 C 0.51 9.04 7.79 -10.98 -0.09 8.96 16 7 O -0.52 -12.15 15.70 5.55 0.09 -12.07 16 8 N -0.72 -11.49 5.08 -53.69 -0.27 -11.76 16 9 C 0.12 2.31 2.60 -67.81 -0.18 2.13 16 10 H 0.08 1.83 7.59 -51.93 -0.39 1.44 16 11 C -0.12 -1.85 5.35 -26.69 -0.14 -2.00 16 12 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 13 C 0.14 2.98 6.52 -3.71 -0.02 2.95 16 14 N -0.59 -15.13 2.99 -172.32 -0.52 -15.64 16 15 C -0.26 -7.30 9.58 -15.06 -0.14 -7.44 16 16 H 0.07 1.84 7.89 -52.49 -0.41 1.42 16 17 C 0.01 0.23 4.91 -17.43 -0.09 0.14 16 18 N -0.90 -26.91 11.19 55.49 0.62 -26.28 16 19 Si 0.90 22.94 29.59 -169.99 -5.03 17.91 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 C 0.17 4.09 4.88 -3.71 -0.02 4.07 16 24 C -0.16 -2.62 6.33 -105.21 -0.67 -3.29 16 25 C -0.03 -0.45 10.07 -39.58 -0.40 -0.84 16 26 C -0.16 -2.06 9.97 -39.95 -0.40 -2.46 16 27 C -0.07 -0.82 9.96 -39.90 -0.40 -1.21 16 28 C -0.15 -1.81 9.97 -39.78 -0.40 -2.21 16 29 C 0.13 1.93 6.87 -84.17 -0.58 1.35 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.39 4.62 8.60 -40.82 -0.35 4.27 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.09 2.75 6.04 -51.93 -0.31 2.44 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 46 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 48 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 394.96 15.07 5.95 5.95 Total: -1.00 -37.62 394.96 -10.00 -47.62 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.36 Total: 4.12 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.65 Total: 0.08 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.00 Total: -63.61 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.03 Total: 17.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.62 -10.00 -47.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007342574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.646 kcal (2) G-P(sol) polarization free energy of solvation -37.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds