Wall clock time and date at job start Wed Apr 1 2020 04:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28388 * 124.36934 * 2 1 4 4 C 1.31572 * 111.96111 * 180.19971 * 3 2 1 5 5 C 1.47389 * 126.81827 * 179.80855 * 4 3 2 6 6 O 1.21615 * 119.99995 * 179.68945 * 5 4 3 7 7 N 1.34773 * 120.00367 * 359.68424 * 5 4 3 8 8 C 1.46501 * 120.00264 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47384 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.70053 * 60.23355 * 9 8 7 11 11 C 1.53619 * 109.66847 * 180.82516 * 9 8 7 12 12 C 1.53035 * 109.24776 * 174.55006 * 11 9 8 13 13 C 1.53037 * 109.54063 * 298.51257 * 12 11 9 14 14 C 1.53194 * 109.31182 * 61.35776 * 13 12 11 15 15 N 1.46925 * 109.58838 * 299.87677 * 9 8 7 16 16 C 1.36937 * 120.63181 * 6.62817 * 15 9 8 17 17 H 1.08001 * 119.99908 * 328.35426 * 16 15 9 18 18 C 1.38814 * 120.00347 * 148.62754 * 16 15 9 19 19 N 1.31615 * 119.99719 * 348.58852 * 18 16 15 20 20 Si 1.86798 * 120.00005 * 168.58978 * 18 16 15 21 21 H 1.48493 * 109.47081 * 89.99921 * 20 18 16 22 22 H 1.48496 * 109.47109 * 210.00350 * 20 18 16 23 23 H 1.48502 * 109.47181 * 330.00130 * 20 18 16 24 24 C 1.46873 * 106.35711 * 359.54643 * 4 3 2 25 25 C 1.39194 * 135.56330 * 180.26254 * 24 4 3 26 26 C 1.36728 * 119.50995 * 180.02562 * 25 24 4 27 27 C 1.38902 * 120.52157 * 359.97438 * 26 25 24 28 28 C 1.36679 * 120.89480 * 0.02562 * 27 26 25 29 29 C 1.37042 * 124.37314 * 179.69007 * 2 1 3 30 30 H 1.09003 * 109.47083 * 270.30810 * 1 2 3 31 31 H 1.08999 * 109.47262 * 30.31009 * 1 2 3 32 32 H 1.09000 * 109.46900 * 150.31600 * 1 2 3 33 33 H 0.97000 * 119.99983 * 0.02562 * 7 5 4 34 34 H 1.09003 * 109.46678 * 60.00250 * 8 7 5 35 35 H 1.09002 * 109.47489 * 300.00741 * 8 7 5 36 36 H 1.09001 * 109.63471 * 54.55469 * 11 9 8 37 37 H 1.09004 * 109.45603 * 294.44072 * 11 9 8 38 38 H 1.08998 * 109.46687 * 178.48624 * 12 11 9 39 39 H 1.09008 * 109.44763 * 58.52506 * 12 11 9 40 40 H 1.09003 * 109.49558 * 301.41150 * 13 12 11 41 41 H 1.08991 * 109.53062 * 181.33025 * 13 12 11 42 42 H 1.09005 * 109.58730 * 185.57923 * 14 13 12 43 43 H 1.09003 * 109.70274 * 65.22952 * 14 13 12 44 44 H 0.97000 * 119.99963 * 179.97438 * 19 18 16 45 45 H 1.07995 * 120.24626 * 359.97438 * 25 24 4 46 46 H 1.07996 * 119.73682 * 179.97438 * 26 25 24 47 47 H 1.07997 * 119.54629 * 180.02562 * 27 26 25 48 48 H 1.08004 * 120.10642 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1898 1.0597 0.0000 4 6 3.4748 0.7770 -0.0043 5 6 4.5910 1.7396 -0.0095 6 8 5.7393 1.3391 -0.0074 7 7 4.3391 3.0635 -0.0168 8 6 5.4485 4.0203 -0.0214 9 6 4.8928 5.4457 -0.0287 10 1 4.2845 5.6075 0.8612 11 6 6.0526 6.4527 -0.0544 12 6 5.4887 7.8681 -0.1987 13 6 4.7232 7.9819 -1.5190 14 6 3.5529 6.9934 -1.5129 15 7 4.0716 5.6481 -1.2301 16 6 3.7902 4.6017 -2.0674 17 1 4.5040 3.8003 -2.1888 18 6 2.5901 4.5737 -2.7643 19 7 1.6318 5.4225 -2.4588 20 14 2.3352 3.3312 -4.1357 21 1 1.7518 2.0866 -3.5739 22 1 1.4108 3.8971 -5.1508 23 1 3.6406 3.0223 -4.7727 24 6 3.5760 -0.6882 0.0037 25 6 4.6167 -1.6126 0.0088 26 6 4.3300 -2.9494 0.0155 27 6 3.0121 -3.3883 0.0179 28 6 1.9757 -2.4973 0.0131 29 6 2.2387 -1.1311 0.0061 30 1 -0.3633 0.0055 1.0277 31 1 -0.3634 0.8872 -0.5186 32 1 -0.3633 -0.8928 -0.5089 33 1 3.4232 3.3830 -0.0181 34 1 6.0596 3.8636 -0.9104 35 1 6.0590 3.8732 0.8696 36 1 6.7084 6.2347 -0.8974 37 1 6.6179 6.3793 0.8746 38 1 6.3072 8.5878 -0.1904 39 1 4.8138 8.0762 0.6315 40 1 5.3914 7.7495 -2.3482 41 1 4.3417 8.9966 -1.6326 42 1 3.0644 6.9993 -2.4874 43 1 2.8356 7.2778 -0.7430 44 1 0.7932 5.4032 -2.9461 45 1 5.6429 -1.2763 0.0065 46 1 5.1346 -3.6698 0.0190 47 1 2.8037 -4.4480 0.0237 48 1 0.9558 -2.8526 0.0146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024766955.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:16 Heat of formation + Delta-G solvation = 79.405448 kcal Electronic energy + Delta-G solvation = -30683.016650 eV Core-core repulsion = 26739.954767 eV Total energy + Delta-G solvation = -3943.061882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -42.28993 -38.97048 -37.70707 -37.56282 -34.10596 -33.45696 -33.02072 -30.80422 -30.49216 -29.97998 -29.83208 -27.43823 -25.83009 -24.72116 -23.49471 -22.29885 -22.07398 -21.70404 -20.57086 -19.54942 -19.04133 -17.71936 -17.09071 -16.44587 -16.18272 -15.66919 -15.49040 -15.20240 -15.11146 -14.25697 -14.09048 -14.02591 -13.86704 -13.65418 -13.37076 -13.15680 -13.01796 -12.79932 -12.74382 -12.38816 -12.00437 -11.93158 -11.91644 -11.66227 -11.17645 -11.12017 -10.92265 -10.74054 -10.64998 -10.51108 -10.26515 -10.11350 -9.95619 -9.85165 -9.64187 -9.44991 -9.28858 -8.68199 -8.54686 -8.22463 -7.83328 -6.60417 -5.79869 -3.26458 0.97452 1.43444 2.17707 2.48516 3.34821 3.41142 3.46669 3.63507 3.75890 4.03222 4.40108 4.47322 4.50012 4.92341 4.98684 5.06084 5.12139 5.25012 5.29212 5.37154 5.37904 5.42574 5.56108 5.62364 5.68065 5.71590 5.78640 5.97972 6.01312 6.09938 6.18801 6.27932 6.33560 6.39285 6.44969 6.51349 6.58147 6.62979 6.74932 6.76995 6.79538 6.89633 6.96104 7.01757 7.19959 7.43088 7.71450 7.83320 7.99486 8.37495 8.45667 8.87109 9.21262 9.82082 10.39745 11.26908 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.003856 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.430262 B = 7260.562429 C = 8367.331430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.321 5.321 3 N -0.194 5.194 4 C 0.009 3.991 5 C 0.597 3.403 6 O -0.555 6.555 7 N -0.677 5.677 8 C 0.134 3.866 9 C 0.160 3.840 10 H 0.033 0.967 11 C -0.127 4.127 12 C -0.107 4.107 13 C -0.144 4.144 14 C 0.173 3.827 15 N -0.589 5.589 16 C -0.247 4.247 17 H 0.069 0.931 18 C 0.013 3.987 19 N -0.900 5.900 20 Si 0.891 3.109 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C -0.110 4.110 25 C -0.039 4.039 26 C -0.149 4.149 27 C -0.089 4.089 28 C -0.122 4.122 29 C 0.062 3.938 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.421 0.579 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.017 0.983 44 H 0.252 0.748 45 H 0.138 0.862 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.481 -10.480 6.807 12.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.113 5.113 3 N -0.022 5.022 4 C -0.162 4.162 5 C 0.380 3.620 6 O -0.433 6.433 7 N -0.327 5.327 8 C 0.010 3.990 9 C 0.053 3.947 10 H 0.050 0.950 11 C -0.166 4.166 12 C -0.145 4.145 13 C -0.183 4.183 14 C 0.047 3.953 15 N -0.313 5.313 16 C -0.377 4.377 17 H 0.086 0.914 18 C -0.186 4.186 19 N -0.544 5.544 20 Si 0.721 3.279 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.117 4.117 25 C -0.059 4.059 26 C -0.169 4.169 27 C -0.110 4.110 28 C -0.143 4.143 29 C -0.050 4.050 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.260 0.740 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.035 0.965 44 H 0.062 0.938 45 H 0.156 0.844 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.783 -9.792 6.723 11.903 hybrid contribution -0.449 -1.056 -0.914 1.467 sum -1.232 -10.848 5.809 12.367 Atomic orbital electron populations 1.22065 0.73305 1.05311 1.03939 1.45194 1.07177 1.00903 1.58030 1.73089 1.03925 1.13158 1.12051 1.22914 0.90462 0.92134 1.10670 1.16616 0.85987 0.81840 0.77509 1.90721 1.20502 1.79238 1.52857 1.45901 1.12212 1.04050 1.70576 1.21347 0.88743 0.87947 1.00945 1.20827 0.91836 0.90927 0.91154 0.94988 1.22008 0.98237 0.95868 1.00524 1.21361 0.98707 0.95965 0.98463 1.22197 1.00223 0.99394 0.96516 1.20786 0.90941 0.82015 1.01526 1.44089 1.59169 1.05359 1.22660 1.19161 0.98689 1.01217 1.18624 0.91358 1.25011 0.95234 0.98082 1.00267 1.69979 1.04619 1.38317 1.41477 0.86464 0.77780 0.81301 0.82368 1.21515 1.21664 1.20510 1.19496 0.92939 0.92089 1.07208 1.20416 0.98911 0.91537 0.95042 1.20782 0.96608 0.95370 1.04118 1.20660 0.92301 0.99107 0.98885 1.19703 0.99879 0.88484 1.06232 1.19218 0.90797 0.90083 1.04919 0.90193 0.88260 0.89262 0.73967 0.91299 0.92353 0.92028 0.93049 0.93763 0.92917 0.92856 0.93606 0.89439 0.96467 0.93751 0.84418 0.85541 0.85490 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 11.24 59.85 0.67 1.69 16 2 N -0.32 -5.12 3.74 -65.49 -0.24 -5.36 16 3 N -0.19 -3.75 11.52 34.46 0.40 -3.35 16 4 C 0.01 0.18 7.32 -80.76 -0.59 -0.41 16 5 C 0.60 12.63 7.81 -12.54 -0.10 12.53 16 6 O -0.56 -12.37 16.40 5.26 0.09 -12.28 16 7 N -0.68 -14.13 3.84 -61.39 -0.24 -14.36 16 8 C 0.13 2.62 4.44 -4.04 -0.02 2.60 16 9 C 0.16 3.16 3.03 -67.38 -0.20 2.95 16 10 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 11 C -0.13 -2.16 5.40 -26.39 -0.14 -2.30 16 12 C -0.11 -1.78 5.88 -26.69 -0.16 -1.94 16 13 C -0.14 -2.71 6.08 -26.61 -0.16 -2.87 16 14 C 0.17 3.95 5.25 -3.71 -0.02 3.93 16 15 N -0.59 -13.74 2.97 -164.52 -0.49 -14.23 16 16 C -0.25 -6.35 6.96 -15.06 -0.10 -6.46 16 17 H 0.07 1.82 5.87 -52.49 -0.31 1.52 16 18 C 0.01 0.35 5.03 -17.43 -0.09 0.26 16 19 N -0.90 -24.80 11.07 55.49 0.61 -24.18 16 20 Si 0.89 22.04 29.57 -169.99 -5.03 17.01 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 C -0.11 -1.94 6.34 -105.05 -0.67 -2.61 16 25 C -0.04 -0.59 9.87 -39.77 -0.39 -0.98 16 26 C -0.15 -1.77 9.98 -39.88 -0.40 -2.17 16 27 C -0.09 -0.95 9.96 -39.90 -0.40 -1.35 16 28 C -0.12 -1.44 9.94 -39.81 -0.40 -1.83 16 29 C 0.06 0.96 6.85 -84.21 -0.58 0.38 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.42 9.40 7.12 -40.82 -0.29 9.10 16 34 H 0.07 1.45 7.43 -51.93 -0.39 1.06 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 2.26 6.11 -51.93 -0.32 1.94 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.14 2.11 7.65 -52.49 -0.40 1.71 16 46 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 48 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -31.32 386.14 -9.99 -41.32 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.18 Total: 8.19 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -3.74 Total: 1.43 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.04 Total: -61.49 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.32 -9.99 -41.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024766955.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.723 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds