Wall clock time and date at job start Wed Apr 1 2020 04:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 120.00173 * 2 1 4 4 H 1.07999 * 119.99658 * 204.29929 * 3 2 1 5 5 C 1.38809 * 119.99944 * 24.29843 * 3 2 1 6 6 N 1.31621 * 120.00126 * 14.80722 * 5 3 2 7 7 Si 1.86793 * 120.00013 * 194.80583 * 5 3 2 8 8 H 1.48496 * 109.47302 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47396 * 119.99892 * 7 5 3 10 10 H 1.48511 * 109.47191 * 240.00318 * 7 5 3 11 11 C 1.46496 * 119.99830 * 179.97438 * 2 1 3 12 12 H 1.09005 * 109.52660 * 179.97438 * 11 2 1 13 13 C 1.53040 * 109.49657 * 59.84265 * 11 2 1 14 14 C 1.53046 * 109.54038 * 178.68305 * 13 11 2 15 15 C 1.52763 * 109.38224 * 61.23886 * 14 13 11 16 16 N 1.46927 * 109.01011 * 305.59045 * 15 14 13 17 17 C 1.34777 * 120.63494 * 233.58528 * 16 15 14 18 18 O 1.21566 * 120.00258 * 183.94181 * 17 16 15 19 19 C 1.47686 * 119.99489 * 3.94661 * 17 16 15 20 20 C 1.40137 * 119.90457 * 134.19707 * 19 17 16 21 21 C 1.36424 * 120.45762 * 179.73984 * 20 19 17 22 22 C 1.39066 * 120.14650 * 359.97438 * 21 20 19 23 23 C 1.40684 * 120.14996 * 359.97438 * 22 21 20 24 24 C 1.39125 * 119.89912 * 313.91657 * 19 17 16 25 25 N 1.35876 * 106.93652 * 180.02562 * 23 22 21 26 26 C 1.30063 * 109.55809 * 0.02562 * 25 23 22 27 27 N 1.36098 * 110.13182 * 359.97438 * 26 25 23 28 28 C 1.46500 * 126.30457 * 180.02562 * 27 26 25 29 29 C 1.46923 * 118.73787 * 53.30663 * 16 15 14 30 30 H 1.08990 * 109.47559 * 272.76530 * 1 2 3 31 31 H 1.09007 * 109.46549 * 32.76524 * 1 2 3 32 32 H 1.08995 * 109.46991 * 152.75753 * 1 2 3 33 33 H 0.97001 * 119.99902 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46258 * 298.69945 * 13 11 2 35 35 H 1.09001 * 109.46013 * 58.66473 * 13 11 2 36 36 H 1.08993 * 109.50107 * 181.31859 * 14 13 11 37 37 H 1.09005 * 109.49889 * 301.41797 * 14 13 11 38 38 H 1.09002 * 109.50987 * 185.70904 * 15 14 13 39 39 H 1.08996 * 109.43094 * 65.42739 * 15 14 13 40 40 H 1.07998 * 119.76524 * 359.71952 * 20 19 17 41 41 H 1.08003 * 119.92661 * 179.97438 * 21 20 19 42 42 H 1.08001 * 120.24949 * 0.30491 * 24 19 17 43 43 H 1.08000 * 124.93760 * 180.02562 * 26 25 23 44 44 H 1.08993 * 109.47261 * 269.96030 * 28 27 26 45 45 H 1.09007 * 109.47145 * 29.96112 * 28 27 26 46 46 H 1.08999 * 109.47042 * 149.95952 * 28 27 26 47 47 H 1.09004 * 109.58821 * 66.43326 * 29 16 15 48 48 H 1.09004 * 109.58949 * 186.71507 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1580 1.2273 -0.3849 5 6 1.5479 2.3348 0.4947 6 7 0.4543 2.2442 1.2214 7 14 2.2902 4.0095 0.1290 8 1 3.5093 3.8399 -0.7018 9 1 1.3017 4.8394 -0.6054 10 1 2.6501 4.6806 1.4040 11 6 2.1974 -1.2687 0.0006 12 1 3.2693 -1.0706 0.0000 13 6 1.8251 -2.0740 -1.2465 14 6 2.6144 -3.3851 -1.2636 15 6 2.2539 -4.2101 -0.0295 16 7 2.4680 -3.3921 1.1722 17 6 3.2415 -3.8417 2.1801 18 8 3.3533 -3.1878 3.1988 19 6 3.9535 -5.1288 2.0469 20 6 5.3015 -5.2232 2.4180 21 6 5.9687 -6.4078 2.3046 22 6 5.3138 -7.5344 1.8189 23 6 3.9604 -7.4578 1.4427 24 6 3.2822 -6.2454 1.5589 25 7 3.5980 -8.6953 1.0143 26 6 4.6147 -9.5016 1.1023 27 7 5.6976 -8.8383 1.5919 28 6 7.0265 -9.4059 1.8328 29 6 1.8277 -2.0721 1.2515 30 1 -0.3634 0.0496 1.0263 31 1 -0.3633 0.8642 -0.5562 32 1 -0.3633 -0.9136 -0.4704 33 1 0.0340 3.0471 1.5674 34 1 0.7575 -2.2931 -1.2319 35 1 2.0646 -1.4943 -2.1379 36 1 2.3663 -3.9474 -2.1638 37 1 3.6824 -3.1671 -1.2531 38 1 2.8874 -5.0960 0.0139 39 1 1.2073 -4.5091 -0.0863 40 1 5.8159 -4.3520 2.7960 41 1 7.0076 -6.4708 2.5927 42 1 2.2434 -6.1735 1.2723 43 1 4.6018 -10.5456 0.8263 44 1 7.0764 -9.7952 2.8496 45 1 7.2102 -10.2141 1.1249 46 1 7.7816 -8.6306 1.7031 47 1 0.7456 -2.1932 1.3013 48 1 2.1782 -1.5488 2.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027471651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:44 Heat of formation + Delta-G solvation = 81.008175 kcal Electronic energy + Delta-G solvation = -29922.149829 eV Core-core repulsion = 25979.157446 eV Total energy + Delta-G solvation = -3942.992383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.46415 -40.09681 -37.70557 -36.82189 -35.06534 -34.60868 -32.41814 -31.33504 -30.87787 -29.76405 -28.62568 -27.47675 -25.95647 -25.43120 -23.70074 -23.61073 -22.52805 -21.61754 -21.03290 -19.83464 -18.66742 -17.76196 -17.32432 -16.89549 -16.61924 -16.21218 -15.69915 -15.15505 -14.92992 -14.62109 -14.49249 -14.06074 -13.93043 -13.92088 -13.66677 -13.56553 -13.36302 -13.18599 -12.72355 -12.63678 -12.44919 -12.27505 -11.87416 -11.81958 -11.76827 -11.07162 -10.99741 -10.78617 -10.72965 -10.47384 -10.37465 -10.30584 -10.26554 -10.11575 -9.84804 -9.69622 -9.54952 -8.64691 -8.53316 -8.35817 -8.22511 -6.69375 -5.69622 -3.15954 0.66314 0.98255 2.22064 2.47225 2.92660 3.23888 3.41545 3.48520 3.50785 3.64706 3.96625 4.17709 4.20775 4.52603 4.58937 4.61249 4.68928 4.87824 5.01205 5.08009 5.09764 5.17826 5.25185 5.35197 5.39772 5.48988 5.58657 5.67459 5.75668 5.85044 5.98254 6.06658 6.06820 6.14470 6.20477 6.21978 6.30958 6.44805 6.48457 6.58008 6.73137 6.74875 6.83347 6.98957 7.05043 7.38264 7.51738 7.72413 7.73990 7.85479 8.41371 8.46594 9.26655 9.89646 10.39417 11.35448 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.002438 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.619763 B =11483.871191 C =11904.522472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.590 5.590 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.169 3.831 12 H 0.065 0.935 13 C -0.133 4.133 14 C -0.130 4.130 15 C 0.093 3.907 16 N -0.598 5.598 17 C 0.557 3.443 18 O -0.535 6.535 19 C -0.126 4.126 20 C -0.050 4.050 21 C -0.116 4.116 22 C 0.061 3.939 23 C 0.036 3.964 24 C -0.030 4.030 25 N -0.488 5.488 26 C 0.256 3.744 27 N -0.498 5.498 28 C 0.079 3.921 29 C 0.099 3.901 30 H 0.028 0.972 31 H 0.042 0.958 32 H 0.001 0.999 33 H 0.252 0.748 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.139 0.861 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.214 0.786 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.062 0.938 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.605 -26.640 -2.196 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.312 5.312 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.169 4.169 15 C -0.030 4.030 16 N -0.330 5.330 17 C 0.345 3.655 18 O -0.412 6.412 19 C -0.131 4.131 20 C -0.071 4.071 21 C -0.137 4.137 22 C -0.048 4.048 23 C -0.081 4.081 24 C -0.050 4.050 25 N -0.207 5.207 26 C -0.030 4.030 27 N -0.188 5.188 28 C -0.063 4.063 29 C -0.025 4.025 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.157 0.843 41 H 0.145 0.855 42 H 0.158 0.842 43 H 0.231 0.769 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.081 0.919 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.836 -26.354 -1.855 28.555 hybrid contribution 1.115 0.932 0.134 1.460 sum 11.951 -25.422 -1.721 28.143 Atomic orbital electron populations 1.20775 0.82748 0.95927 0.99095 1.43938 1.01770 1.00052 1.85420 1.19232 0.99280 0.85428 1.34595 0.91440 1.25055 0.98235 0.98624 0.97614 1.70081 1.21484 1.27358 1.35781 0.86199 0.78444 0.84408 0.77572 1.20318 1.21640 1.21726 1.20642 0.96492 0.86199 0.90722 0.91722 1.22085 0.99668 0.94994 1.00519 1.21827 1.01037 0.97238 0.96827 1.22085 1.01559 0.94461 0.84861 1.48217 1.48297 1.19198 1.17301 1.18164 0.78976 0.84922 0.83455 1.90806 1.63581 1.58211 1.28598 1.19731 0.95299 0.93950 1.04145 1.20619 0.92711 0.97357 0.96370 1.19561 1.00019 0.90069 1.04067 1.19018 0.96050 0.85916 1.03856 1.18845 0.91423 0.93140 1.04725 1.20522 0.99993 0.88715 0.95796 1.70488 1.27766 1.00461 1.21935 1.25368 0.81078 0.99493 0.97057 1.45283 1.12004 1.08043 1.53502 1.21997 0.81162 1.00207 1.02955 1.22585 0.96826 0.80626 1.02421 0.95360 0.93919 0.98019 0.93766 0.92234 0.91741 0.91262 0.91797 0.89162 0.91318 0.84272 0.85546 0.84175 0.76941 0.90622 0.89238 0.89676 0.91950 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 7.95 59.85 0.48 4.38 16 2 N -0.59 -14.83 2.81 -173.35 -0.49 -15.32 16 3 C -0.26 -7.11 9.55 -15.06 -0.14 -7.26 16 4 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 5 C 0.00 0.10 5.04 -17.43 -0.09 0.01 16 6 N -0.90 -26.72 10.91 55.49 0.61 -26.11 16 7 Si 0.90 22.21 29.58 -169.99 -5.03 17.18 16 8 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 C 0.17 3.51 2.74 -67.81 -0.19 3.32 16 12 H 0.06 1.42 7.88 -51.93 -0.41 1.01 16 13 C -0.13 -2.25 5.12 -26.69 -0.14 -2.39 16 14 C -0.13 -1.75 6.07 -26.83 -0.16 -1.91 16 15 C 0.09 1.23 5.16 -3.93 -0.02 1.21 16 16 N -0.60 -10.00 2.98 -174.20 -0.52 -10.52 16 17 C 0.56 9.73 7.27 -12.40 -0.09 9.64 16 18 O -0.53 -11.43 16.42 5.31 0.09 -11.35 16 19 C -0.13 -1.76 5.18 -105.00 -0.54 -2.30 16 20 C -0.05 -0.61 9.61 -39.52 -0.38 -0.99 16 21 C -0.12 -1.16 9.97 -39.93 -0.40 -1.55 16 22 C 0.06 0.65 6.87 -83.95 -0.58 0.07 16 23 C 0.04 0.45 7.22 -84.72 -0.61 -0.16 16 24 C -0.03 -0.39 7.36 -38.82 -0.29 -0.67 16 25 N -0.49 -5.66 11.28 -12.06 -0.14 -5.79 16 26 C 0.26 1.94 12.50 -89.77 -1.12 0.82 16 27 N -0.50 -3.68 3.20 -123.13 -0.39 -4.07 16 28 C 0.08 0.22 11.17 59.85 0.67 0.89 16 29 C 0.10 1.98 5.78 -3.71 -0.02 1.96 16 30 H 0.03 0.75 7.45 -51.93 -0.39 0.37 16 31 H 0.04 1.12 7.32 -51.92 -0.38 0.74 16 32 H 0.00 0.03 6.45 -51.93 -0.33 -0.31 16 33 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.06 1.00 6.71 -51.93 -0.35 0.65 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.08 4.25 -51.93 -0.22 0.86 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.14 1.69 6.58 -52.49 -0.35 1.35 16 43 H 0.21 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.09 0.04 8.14 -51.92 -0.42 -0.38 16 46 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.06 1.26 7.51 -51.93 -0.39 0.87 16 48 H 0.09 2.18 7.03 -51.93 -0.36 1.81 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -35.69 381.55 -10.70 -46.39 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.95 Total: -1.21 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -3.62 Total: 5.06 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.93 Total: -61.82 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.69 -10.70 -46.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027471651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.396 kcal (2) G-P(sol) polarization free energy of solvation -35.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds