Wall clock time and date at job start Wed Apr 1 2020 04:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 120.00173 * 2 1 4 4 H 1.07999 * 119.99658 * 204.29929 * 3 2 1 5 5 C 1.38809 * 119.99944 * 24.29843 * 3 2 1 6 6 N 1.31621 * 120.00126 * 14.80722 * 5 3 2 7 7 Si 1.86793 * 120.00013 * 194.80583 * 5 3 2 8 8 H 1.48496 * 109.47302 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47396 * 119.99892 * 7 5 3 10 10 H 1.48511 * 109.47191 * 240.00318 * 7 5 3 11 11 C 1.46496 * 119.99830 * 179.97438 * 2 1 3 12 12 H 1.09005 * 109.52660 * 179.97438 * 11 2 1 13 13 C 1.53040 * 109.49657 * 59.84265 * 11 2 1 14 14 C 1.53046 * 109.54038 * 178.68305 * 13 11 2 15 15 C 1.52763 * 109.38224 * 61.23886 * 14 13 11 16 16 N 1.46927 * 109.01011 * 305.59045 * 15 14 13 17 17 C 1.34777 * 120.63494 * 233.58528 * 16 15 14 18 18 O 1.21566 * 120.00258 * 183.94181 * 17 16 15 19 19 C 1.47686 * 119.99489 * 3.94661 * 17 16 15 20 20 C 1.40137 * 119.90457 * 134.19707 * 19 17 16 21 21 C 1.36424 * 120.45762 * 179.73984 * 20 19 17 22 22 C 1.39066 * 120.14650 * 359.97438 * 21 20 19 23 23 C 1.40684 * 120.14996 * 359.97438 * 22 21 20 24 24 C 1.39125 * 119.89912 * 313.91657 * 19 17 16 25 25 N 1.35876 * 106.93652 * 180.02562 * 23 22 21 26 26 C 1.30063 * 109.55809 * 0.02562 * 25 23 22 27 27 N 1.36098 * 110.13182 * 359.97438 * 26 25 23 28 28 C 1.46500 * 126.30457 * 180.02562 * 27 26 25 29 29 C 1.46923 * 118.73787 * 53.30663 * 16 15 14 30 30 H 1.08990 * 109.47559 * 272.76530 * 1 2 3 31 31 H 1.09007 * 109.46549 * 32.76524 * 1 2 3 32 32 H 1.08995 * 109.46991 * 152.75753 * 1 2 3 33 33 H 0.97001 * 119.99902 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46258 * 298.69945 * 13 11 2 35 35 H 1.09001 * 109.46013 * 58.66473 * 13 11 2 36 36 H 1.08993 * 109.50107 * 181.31859 * 14 13 11 37 37 H 1.09005 * 109.49889 * 301.41797 * 14 13 11 38 38 H 1.09002 * 109.50987 * 185.70904 * 15 14 13 39 39 H 1.08996 * 109.43094 * 65.42739 * 15 14 13 40 40 H 1.07998 * 119.76524 * 359.71952 * 20 19 17 41 41 H 1.08003 * 119.92661 * 179.97438 * 21 20 19 42 42 H 1.08001 * 120.24949 * 0.30491 * 24 19 17 43 43 H 1.08000 * 124.93760 * 180.02562 * 26 25 23 44 44 H 1.08993 * 109.47261 * 269.96030 * 28 27 26 45 45 H 1.09007 * 109.47145 * 29.96112 * 28 27 26 46 46 H 1.08999 * 109.47042 * 149.95952 * 28 27 26 47 47 H 1.09004 * 109.58821 * 66.43326 * 29 16 15 48 48 H 1.09004 * 109.58949 * 186.71507 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1580 1.2273 -0.3849 5 6 1.5479 2.3348 0.4947 6 7 0.4543 2.2442 1.2214 7 14 2.2902 4.0095 0.1290 8 1 3.5093 3.8399 -0.7018 9 1 1.3017 4.8394 -0.6054 10 1 2.6501 4.6806 1.4040 11 6 2.1974 -1.2687 0.0006 12 1 3.2693 -1.0706 0.0000 13 6 1.8251 -2.0740 -1.2465 14 6 2.6144 -3.3851 -1.2636 15 6 2.2539 -4.2101 -0.0295 16 7 2.4680 -3.3921 1.1722 17 6 3.2415 -3.8417 2.1801 18 8 3.3533 -3.1878 3.1988 19 6 3.9535 -5.1288 2.0469 20 6 5.3015 -5.2232 2.4180 21 6 5.9687 -6.4078 2.3046 22 6 5.3138 -7.5344 1.8189 23 6 3.9604 -7.4578 1.4427 24 6 3.2822 -6.2454 1.5589 25 7 3.5980 -8.6953 1.0143 26 6 4.6147 -9.5016 1.1023 27 7 5.6976 -8.8383 1.5919 28 6 7.0265 -9.4059 1.8328 29 6 1.8277 -2.0721 1.2515 30 1 -0.3634 0.0496 1.0263 31 1 -0.3633 0.8642 -0.5562 32 1 -0.3633 -0.9136 -0.4704 33 1 0.0340 3.0471 1.5674 34 1 0.7575 -2.2931 -1.2319 35 1 2.0646 -1.4943 -2.1379 36 1 2.3663 -3.9474 -2.1638 37 1 3.6824 -3.1671 -1.2531 38 1 2.8874 -5.0960 0.0139 39 1 1.2073 -4.5091 -0.0863 40 1 5.8159 -4.3520 2.7960 41 1 7.0076 -6.4708 2.5927 42 1 2.2434 -6.1735 1.2723 43 1 4.6018 -10.5456 0.8263 44 1 7.0764 -9.7952 2.8496 45 1 7.2102 -10.2141 1.1249 46 1 7.7816 -8.6306 1.7031 47 1 0.7456 -2.1932 1.3013 48 1 2.1782 -1.5488 2.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027471651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:42 Heat of formation + Delta-G solvation = 59.525615 kcal Electronic energy + Delta-G solvation = -29923.081382 eV Core-core repulsion = 25979.157446 eV Total energy + Delta-G solvation = -3943.923936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.17835 -41.42408 -39.10412 -37.94137 -36.80905 -35.22595 -34.05867 -32.86813 -32.05039 -30.61110 -30.19496 -28.05221 -27.96983 -26.66131 -25.37943 -24.52624 -23.55948 -23.07404 -21.75828 -21.21041 -20.08565 -18.88732 -18.64032 -18.06355 -17.82273 -17.04661 -16.99146 -16.70873 -16.21727 -15.91979 -15.63093 -15.41535 -15.14461 -15.02558 -14.93042 -14.54895 -14.40465 -14.15674 -13.99386 -13.89940 -13.81070 -13.47155 -13.36008 -12.96674 -12.86458 -12.69068 -12.62517 -12.47315 -12.21375 -12.10926 -12.07866 -11.77106 -11.70406 -11.40062 -11.33525 -11.07972 -10.88307 -10.65146 -9.77894 -9.43331 -9.14273 -8.75879 -7.85272 -5.34617 -0.18138 0.09594 1.44178 1.45202 1.56096 1.58585 1.70235 1.83113 1.96186 2.50047 2.71890 3.15918 3.28026 3.49223 3.60267 3.65188 3.89441 3.95817 4.00336 4.06228 4.10926 4.21025 4.24579 4.35305 4.36655 4.44563 4.51445 4.58534 4.60191 4.67052 4.76350 4.79249 4.87464 4.94224 4.96618 5.03790 5.12449 5.23542 5.26900 5.30569 5.35308 5.39894 5.46412 5.54050 5.62965 5.67939 5.68378 6.19826 6.32007 6.37676 6.83581 7.05657 7.13288 7.84256 8.28478 9.17932 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.002438 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.619763 B =11483.871191 C =11904.522472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.607 5.607 3 C -0.265 4.265 4 H 0.066 0.934 5 C -0.052 4.052 6 N -0.935 5.935 7 Si 0.970 3.030 8 H -0.266 1.266 9 H -0.287 1.287 10 H -0.294 1.294 11 C 0.168 3.832 12 H 0.046 0.954 13 C -0.121 4.121 14 C -0.121 4.121 15 C 0.091 3.909 16 N -0.596 5.596 17 C 0.554 3.446 18 O -0.587 6.587 19 C -0.139 4.139 20 C -0.070 4.070 21 C -0.098 4.098 22 C 0.055 3.945 23 C 0.018 3.982 24 C -0.034 4.034 25 N -0.532 5.532 26 C 0.276 3.724 27 N -0.492 5.492 28 C 0.069 3.931 29 C 0.114 3.886 30 H -0.002 1.002 31 H 0.018 0.982 32 H 0.038 0.962 33 H 0.249 0.751 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.159 0.841 42 H 0.141 0.859 43 H 0.262 0.738 44 H 0.087 0.913 45 H 0.120 0.880 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.691 -30.555 -4.088 33.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.329 5.329 3 C -0.396 4.396 4 H 0.084 0.916 5 C -0.248 4.248 6 N -0.582 5.582 7 Si 0.798 3.202 8 H -0.190 1.190 9 H -0.213 1.213 10 H -0.221 1.221 11 C 0.060 3.940 12 H 0.064 0.936 13 C -0.160 4.160 14 C -0.159 4.159 15 C -0.029 4.029 16 N -0.327 5.327 17 C 0.344 3.656 18 O -0.468 6.468 19 C -0.145 4.145 20 C -0.091 4.091 21 C -0.118 4.118 22 C -0.057 4.057 23 C -0.100 4.100 24 C -0.054 4.054 25 N -0.251 5.251 26 C -0.010 4.010 27 N -0.180 5.180 28 C -0.071 4.071 29 C -0.010 4.010 30 H 0.016 0.984 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.152 0.848 41 H 0.177 0.823 42 H 0.159 0.841 43 H 0.278 0.722 44 H 0.106 0.894 45 H 0.138 0.862 46 H 0.110 0.890 47 H 0.079 0.921 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.967 -30.344 -3.789 33.215 hybrid contribution 0.569 1.894 0.733 2.109 sum 13.536 -28.450 -3.056 31.654 Atomic orbital electron populations 1.20505 0.82625 0.96522 0.97210 1.44165 1.02134 1.00956 1.85642 1.19535 0.99363 0.86802 1.33856 0.91574 1.25849 0.98983 1.02107 0.97853 1.70244 1.22930 1.27879 1.37107 0.85171 0.78027 0.79920 0.77123 1.19030 1.21334 1.22145 1.20771 0.94996 0.85282 0.92920 0.93600 1.21917 1.00549 0.96027 0.97557 1.21802 1.00248 0.95524 0.98365 1.22366 1.03163 0.94420 0.83000 1.48227 1.47775 1.18110 1.18630 1.18790 0.78380 0.85820 0.82585 1.90765 1.65275 1.60161 1.30649 1.19394 0.95991 0.92336 1.06773 1.20645 0.92264 0.98458 0.97691 1.19761 1.01149 0.88828 1.02096 1.19174 0.95561 0.87473 1.03465 1.19006 0.92420 0.93399 1.05163 1.20431 1.00001 0.88861 0.96096 1.70479 1.29910 1.00550 1.24183 1.26354 0.79938 1.00699 0.94007 1.45625 1.13617 1.06691 1.52112 1.22399 0.78782 1.01195 1.04689 1.22058 0.96572 0.82296 1.00112 0.98368 0.96331 0.94367 0.94207 0.91633 0.92102 0.87471 0.92054 0.87256 0.89544 0.84814 0.82307 0.84109 0.72224 0.89410 0.86157 0.89031 0.92149 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.92 7.95 127.77 1.02 9.93 16 2 N -0.61 -31.56 2.81 -702.36 -1.97 -33.53 16 3 C -0.27 -15.23 9.55 84.03 0.80 -14.43 16 4 H 0.07 3.73 7.85 -2.91 -0.02 3.71 16 5 C -0.05 -3.06 5.04 84.86 0.43 -2.63 16 6 N -0.94 -57.64 10.91 21.65 0.24 -57.40 16 7 Si 0.97 46.86 29.58 68.60 2.03 48.89 16 8 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 9 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 10 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 11 C 0.17 7.21 2.74 45.07 0.12 7.33 16 12 H 0.05 2.11 7.88 -2.38 -0.02 2.09 16 13 C -0.12 -3.97 5.12 30.62 0.16 -3.81 16 14 C -0.12 -2.97 6.07 30.53 0.19 -2.78 16 15 C 0.09 2.29 5.16 86.22 0.45 2.74 16 16 N -0.60 -20.57 2.98 -823.31 -2.45 -23.03 16 17 C 0.55 20.42 7.27 86.74 0.63 21.05 16 18 O -0.59 -27.15 16.42 -3.92 -0.06 -27.21 16 19 C -0.14 -3.98 5.18 -20.11 -0.10 -4.09 16 20 C -0.07 -1.70 9.61 22.31 0.21 -1.49 16 21 C -0.10 -1.75 9.97 22.04 0.22 -1.53 16 22 C 0.05 1.01 6.87 39.00 0.27 1.28 16 23 C 0.02 0.41 7.22 39.40 0.28 0.69 16 24 C -0.03 -0.85 7.36 22.76 0.17 -0.69 16 25 N -0.53 -10.96 11.28 -192.07 -2.17 -13.13 16 26 C 0.28 3.03 12.50 180.05 2.25 5.28 16 27 N -0.49 -5.24 3.20 -543.47 -1.74 -6.98 16 28 C 0.07 0.05 11.17 127.77 1.43 1.48 16 29 C 0.11 4.85 5.78 86.36 0.50 5.35 16 30 H 0.00 -0.11 7.45 -2.39 -0.02 -0.13 16 31 H 0.02 0.99 7.32 -2.38 -0.02 0.97 16 32 H 0.04 1.61 6.45 -2.39 -0.02 1.60 16 33 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.07 2.08 6.71 -2.39 -0.02 2.06 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.11 2.43 4.25 -2.39 -0.01 2.42 16 39 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 41 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 42 H 0.14 3.35 6.58 -2.91 -0.02 3.33 16 43 H 0.26 -0.07 8.06 -2.91 -0.02 -0.09 16 44 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.12 -0.59 8.14 -2.38 -0.02 -0.61 16 46 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.06 2.55 7.51 -2.38 -0.02 2.53 16 48 H 0.05 2.40 7.03 -2.38 -0.02 2.39 16 Total: -1.00 -84.01 381.55 3.86 -80.16 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.97 Total: 8.55 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 9.01 Total: 23.69 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -8.09 Total: -134.07 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.06 Total: -27.21 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -84.01 3.86 -80.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027471651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.683 kcal (2) G-P(sol) polarization free energy of solvation -84.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds