Wall clock time and date at job start Wed Apr 1 2020 04:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 120.00072 * 2 1 4 4 H 1.08000 * 119.99739 * 197.10517 * 3 2 1 5 5 C 1.38802 * 119.99971 * 17.10147 * 3 2 1 6 6 N 1.31624 * 119.99940 * 24.14353 * 5 3 2 7 7 Si 1.86796 * 120.00258 * 204.14036 * 5 3 2 8 8 H 1.48498 * 109.47208 * 94.99306 * 7 5 3 9 9 H 1.48500 * 109.47675 * 214.99738 * 7 5 3 10 10 H 1.48502 * 109.47071 * 334.99291 * 7 5 3 11 11 C 1.46508 * 120.00138 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.52488 * 180.08600 * 11 2 1 13 13 C 1.53071 * 109.61693 * 300.10722 * 11 2 1 14 14 C 1.53050 * 109.65447 * 181.16794 * 13 11 2 15 15 C 1.53190 * 109.31244 * 298.70061 * 14 13 11 16 16 N 1.46925 * 108.77683 * 54.63414 * 15 14 13 17 17 C 1.34780 * 120.63031 * 126.41077 * 16 15 14 18 18 O 1.21729 * 119.99752 * 175.20205 * 17 16 15 19 19 C 1.46420 * 119.99688 * 355.20439 * 17 16 15 20 20 C 1.40113 * 126.85631 * 266.86914 * 19 17 16 21 21 C 1.40054 * 136.36748 * 0.03473 * 20 19 17 22 22 C 1.36075 * 119.47061 * 179.97438 * 21 20 19 23 23 C 1.39477 * 121.57035 * 359.97438 * 22 21 20 24 24 C 1.35828 * 121.83987 * 359.68251 * 23 22 21 25 25 C 1.40934 * 119.53999 * 0.53086 * 24 23 22 26 26 N 1.32141 * 135.41862 * 179.33935 * 25 24 23 27 27 N 1.28450 * 111.39182 * 179.97438 * 26 25 24 28 28 C 1.46502 * 124.15863 * 179.97438 * 27 26 25 29 29 C 1.46922 * 118.74034 * 306.39267 * 16 15 14 30 30 H 1.09001 * 109.47135 * 274.64949 * 1 2 3 31 31 H 1.08996 * 109.46686 * 34.65352 * 1 2 3 32 32 H 1.09004 * 109.46638 * 154.64969 * 1 2 3 33 33 H 0.97002 * 120.00061 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.34979 * 61.15157 * 13 11 2 35 35 H 1.08999 * 109.44905 * 301.24862 * 13 11 2 36 36 H 1.09000 * 109.49644 * 178.74900 * 14 13 11 37 37 H 1.08997 * 109.49599 * 58.65474 * 14 13 11 38 38 H 1.09005 * 109.58590 * 294.84510 * 15 14 13 39 39 H 1.09001 * 109.69855 * 174.49442 * 15 14 13 40 40 H 1.08008 * 120.26579 * 0.02562 * 21 20 19 41 41 H 1.08008 * 119.21379 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.08259 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.23221 * 179.89189 * 24 23 22 44 44 H 1.09000 * 109.47494 * 274.70953 * 28 27 26 45 45 H 1.09001 * 109.46750 * 34.70584 * 28 27 26 46 46 H 1.08998 * 109.47052 * 154.70644 * 28 27 26 47 47 H 1.09001 * 109.59311 * 173.39416 * 29 16 15 48 48 H 1.09005 * 109.58631 * 293.67950 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1939 1.2066 -0.2751 5 6 1.5017 2.3614 0.3535 6 7 0.4323 2.3186 1.1197 7 14 2.1474 4.0041 -0.2580 8 1 1.4213 4.3924 -1.4938 9 1 1.9361 5.0388 0.7860 10 1 3.5982 3.8872 -0.5524 11 6 2.1976 -1.2688 0.0006 12 1 3.2694 -1.0706 0.0020 13 6 1.8282 -2.0749 1.2483 14 6 2.6148 -3.3877 1.2646 15 6 2.2467 -4.2143 0.0284 16 7 2.4656 -3.3945 -1.1710 17 6 3.2364 -3.8461 -2.1802 18 8 3.3397 -3.1968 -3.2047 19 6 3.9494 -5.1177 -2.0442 20 6 5.2626 -5.3007 -1.5913 21 6 6.3034 -4.4787 -1.1410 22 6 7.4864 -5.0393 -0.7698 23 6 7.6906 -6.4179 -0.8257 24 6 6.7197 -7.2696 -1.2463 25 6 5.4713 -6.7552 -1.6501 26 7 4.3447 -7.2711 -2.1093 27 7 3.4704 -6.3583 -2.3380 28 6 2.1239 -6.6195 -2.8529 29 6 1.8279 -2.0732 -1.2497 30 1 -0.3633 0.0833 1.0243 31 1 -0.3632 0.8453 -0.5843 32 1 -0.3633 -0.9288 -0.4400 33 1 -0.0207 3.1401 1.3664 34 1 0.7601 -2.2919 1.2349 35 1 2.0700 -1.4957 2.1394 36 1 2.3665 -3.9494 2.1650 37 1 3.6831 -3.1717 1.2529 38 1 1.1984 -4.5079 0.0841 39 1 2.8736 -5.1047 -0.0181 40 1 6.1678 -3.4085 -1.0881 41 1 8.2863 -4.4015 -0.4236 42 1 8.6455 -6.8200 -0.5208 43 1 6.9065 -8.3328 -1.2809 44 1 2.1551 -6.6735 -3.9411 45 1 1.7591 -7.5655 -2.4526 46 1 1.4558 -5.8141 -2.5480 47 1 2.1803 -1.5496 -2.1384 48 1 0.7456 -2.1922 -1.3008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027639344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:27 Heat of formation + Delta-G solvation = 98.757788 kcal Electronic energy + Delta-G solvation = -30639.686636 eV Core-core repulsion = 26697.463934 eV Total energy + Delta-G solvation = -3942.222702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 27.39 seconds Orbital eigenvalues (eV) -42.67411 -39.89055 -37.85208 -37.51711 -35.20549 -33.06276 -32.50964 -32.00068 -31.40436 -29.84196 -28.75535 -27.72653 -26.08372 -25.53572 -23.88989 -23.29948 -22.49722 -22.09064 -21.48453 -19.45697 -18.75948 -17.85007 -17.59641 -16.83560 -16.75954 -16.36063 -15.91825 -15.17982 -14.84692 -14.70841 -14.27992 -14.17634 -14.12471 -13.86574 -13.56150 -13.50532 -13.39305 -13.28742 -12.77566 -12.71399 -12.41134 -12.06995 -11.98403 -11.87840 -11.85135 -11.21064 -11.00646 -10.95585 -10.69798 -10.50477 -10.46448 -10.45414 -10.35665 -10.18513 -10.05685 -9.92204 -9.75410 -8.81666 -8.72640 -8.44164 -7.85016 -6.88606 -5.80359 -3.16675 0.41259 1.52635 1.84702 2.22433 2.49193 2.99658 3.39036 3.46948 3.48200 3.70175 3.90894 4.12650 4.47696 4.60959 4.69291 4.76274 4.84781 4.94432 4.97721 5.00016 5.09048 5.20983 5.25022 5.34610 5.40584 5.42817 5.46390 5.57143 5.65053 5.75032 5.87673 5.90931 6.06202 6.10102 6.21763 6.27816 6.31470 6.39823 6.44682 6.46941 6.50755 6.64658 6.78634 6.83591 6.90514 7.26171 7.32200 7.59004 7.74365 7.79415 7.99256 8.30777 9.16052 9.81515 10.27743 11.25851 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.003037 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.236537 B = 9218.896503 C = 9850.149437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.590 5.590 3 C -0.260 4.260 4 H 0.072 0.928 5 C 0.005 3.995 6 N -0.898 5.898 7 Si 0.897 3.103 8 H -0.288 1.288 9 H -0.293 1.293 10 H -0.278 1.278 11 C 0.170 3.830 12 H 0.067 0.933 13 C -0.133 4.133 14 C -0.130 4.130 15 C 0.108 3.892 16 N -0.589 5.589 17 C 0.587 3.413 18 O -0.519 6.519 19 C -0.007 4.007 20 C -0.128 4.128 21 C -0.057 4.057 22 C -0.132 4.132 23 C -0.097 4.097 24 C -0.082 4.082 25 C 0.061 3.939 26 N -0.292 5.292 27 N -0.222 5.222 28 C 0.077 3.923 29 C 0.096 3.904 30 H 0.029 0.971 31 H 0.042 0.958 32 H 0.002 0.998 33 H 0.253 0.747 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.134 -20.923 -2.388 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.311 5.311 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.542 5.542 7 Si 0.727 3.273 8 H -0.215 1.215 9 H -0.219 1.219 10 H -0.204 1.204 11 C 0.060 3.940 12 H 0.085 0.915 13 C -0.173 4.173 14 C -0.169 4.169 15 C -0.015 4.015 16 N -0.322 5.322 17 C 0.370 3.630 18 O -0.394 6.394 19 C -0.144 4.144 20 C -0.137 4.137 21 C -0.077 4.077 22 C -0.151 4.151 23 C -0.119 4.119 24 C -0.103 4.103 25 C -0.084 4.084 26 N -0.129 5.129 27 N -0.005 5.005 28 C -0.063 4.063 29 C -0.027 4.027 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.021 0.979 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.114 0.886 45 H 0.124 0.876 46 H 0.117 0.883 47 H 0.112 0.888 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.352 -21.474 -3.239 22.366 hybrid contribution 0.450 1.615 -0.002 1.676 sum 5.801 -19.859 -3.241 20.941 Atomic orbital electron populations 1.20786 0.82663 0.95781 0.99434 1.43948 1.01762 1.00063 1.85361 1.19227 0.95634 0.84059 1.39974 0.91053 1.24805 0.98378 0.97985 0.98243 1.70168 1.22488 1.26736 1.34838 0.86344 0.78562 0.83991 0.78397 1.21501 1.21944 1.20366 1.20554 0.96642 0.86217 0.90557 0.91497 1.22153 0.99419 0.94603 1.01079 1.21902 1.01359 0.97314 0.96312 1.21785 1.01152 0.93624 0.84975 1.48223 1.47410 1.19143 1.17383 1.16831 0.78804 0.83551 0.83792 1.90894 1.62247 1.57927 1.28322 1.21073 0.95735 0.87247 1.10321 1.19333 0.92823 0.94821 1.06676 1.20137 0.91506 0.99077 0.96998 1.20661 0.97299 0.95067 1.02083 1.20620 0.98718 0.93291 0.99246 1.19849 0.89467 0.99760 1.01216 1.20584 0.93947 0.91090 1.02813 1.73407 0.99866 1.16778 1.22800 1.45705 1.12223 1.02180 1.40426 1.22408 0.77177 1.05187 1.01562 1.22578 0.97089 0.80531 1.02540 0.95244 0.93937 0.97913 0.93747 0.92412 0.91192 0.91114 0.91501 0.91139 0.90735 0.85688 0.85661 0.85532 0.85409 0.88611 0.87588 0.88343 0.88850 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.67 8.09 59.85 0.48 4.15 16 2 N -0.59 -14.06 2.82 -173.32 -0.49 -14.55 16 3 C -0.26 -6.99 9.59 -15.06 -0.14 -7.14 16 4 H 0.07 1.91 7.85 -52.49 -0.41 1.50 16 5 C 0.00 0.13 4.85 -17.43 -0.08 0.05 16 6 N -0.90 -25.60 11.07 55.49 0.61 -24.98 16 7 Si 0.90 21.68 29.62 -169.99 -5.03 16.65 16 8 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.17 3.28 2.74 -67.79 -0.19 3.09 16 12 H 0.07 1.38 7.83 -51.93 -0.41 0.97 16 13 C -0.13 -2.19 5.15 -26.67 -0.14 -2.33 16 14 C -0.13 -1.67 6.09 -26.61 -0.16 -1.83 16 15 C 0.11 1.28 6.35 -3.71 -0.02 1.26 16 16 N -0.59 -8.58 2.97 -174.40 -0.52 -9.10 16 17 C 0.59 9.24 6.73 -12.97 -0.09 9.16 16 18 O -0.52 -10.06 16.54 5.16 0.09 -9.97 16 19 C -0.01 -0.10 4.63 -81.93 -0.38 -0.48 16 20 C -0.13 -1.81 6.41 -104.94 -0.67 -2.48 16 21 C -0.06 -0.73 10.06 -39.68 -0.40 -1.13 16 22 C -0.13 -1.37 9.92 -39.90 -0.40 -1.77 16 23 C -0.10 -0.91 9.89 -39.98 -0.40 -1.30 16 24 C -0.08 -0.88 10.09 -39.43 -0.40 -1.28 16 25 C 0.06 0.81 7.53 -83.14 -0.63 0.18 16 26 N -0.29 -3.85 11.88 33.21 0.39 -3.46 16 27 N -0.22 -2.71 3.71 -63.75 -0.24 -2.94 16 28 C 0.08 0.60 11.12 59.85 0.67 1.27 16 29 C 0.10 1.65 5.77 -3.71 -0.02 1.62 16 30 H 0.03 0.74 7.51 -51.93 -0.39 0.35 16 31 H 0.04 1.08 7.21 -51.93 -0.37 0.70 16 32 H 0.00 0.05 6.36 -51.93 -0.33 -0.28 16 33 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.06 0.95 7.71 -51.93 -0.40 0.55 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.85 6.33 -51.93 -0.33 0.53 16 40 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 41 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.72 7.56 -51.93 -0.39 0.33 16 47 H 0.09 1.83 7.03 -51.93 -0.37 1.46 16 48 H 0.07 1.14 6.49 -51.93 -0.34 0.81 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -32.86 386.22 -9.43 -42.28 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.10 Total: -0.78 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.96 Total: 1.04 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.24 Total: -55.04 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.86 -9.43 -42.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027639344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.041 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.39 seconds