Wall clock time and date at job start Wed Apr 1 2020 04:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 120.00072 * 2 1 4 4 H 1.08000 * 119.99739 * 197.10517 * 3 2 1 5 5 C 1.38802 * 119.99971 * 17.10147 * 3 2 1 6 6 N 1.31624 * 119.99940 * 24.14353 * 5 3 2 7 7 Si 1.86796 * 120.00258 * 204.14036 * 5 3 2 8 8 H 1.48498 * 109.47208 * 94.99306 * 7 5 3 9 9 H 1.48500 * 109.47675 * 214.99738 * 7 5 3 10 10 H 1.48502 * 109.47071 * 334.99291 * 7 5 3 11 11 C 1.46508 * 120.00138 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.52488 * 180.08600 * 11 2 1 13 13 C 1.53071 * 109.61693 * 300.10722 * 11 2 1 14 14 C 1.53050 * 109.65447 * 181.16794 * 13 11 2 15 15 C 1.53190 * 109.31244 * 298.70061 * 14 13 11 16 16 N 1.46925 * 108.77683 * 54.63414 * 15 14 13 17 17 C 1.34780 * 120.63031 * 126.41077 * 16 15 14 18 18 O 1.21729 * 119.99752 * 175.20205 * 17 16 15 19 19 C 1.46420 * 119.99688 * 355.20439 * 17 16 15 20 20 C 1.40113 * 126.85631 * 266.86914 * 19 17 16 21 21 C 1.40054 * 136.36748 * 0.03473 * 20 19 17 22 22 C 1.36075 * 119.47061 * 179.97438 * 21 20 19 23 23 C 1.39477 * 121.57035 * 359.97438 * 22 21 20 24 24 C 1.35828 * 121.83987 * 359.68251 * 23 22 21 25 25 C 1.40934 * 119.53999 * 0.53086 * 24 23 22 26 26 N 1.32141 * 135.41862 * 179.33935 * 25 24 23 27 27 N 1.28450 * 111.39182 * 179.97438 * 26 25 24 28 28 C 1.46502 * 124.15863 * 179.97438 * 27 26 25 29 29 C 1.46922 * 118.74034 * 306.39267 * 16 15 14 30 30 H 1.09001 * 109.47135 * 274.64949 * 1 2 3 31 31 H 1.08996 * 109.46686 * 34.65352 * 1 2 3 32 32 H 1.09004 * 109.46638 * 154.64969 * 1 2 3 33 33 H 0.97002 * 120.00061 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.34979 * 61.15157 * 13 11 2 35 35 H 1.08999 * 109.44905 * 301.24862 * 13 11 2 36 36 H 1.09000 * 109.49644 * 178.74900 * 14 13 11 37 37 H 1.08997 * 109.49599 * 58.65474 * 14 13 11 38 38 H 1.09005 * 109.58590 * 294.84510 * 15 14 13 39 39 H 1.09001 * 109.69855 * 174.49442 * 15 14 13 40 40 H 1.08008 * 120.26579 * 0.02562 * 21 20 19 41 41 H 1.08008 * 119.21379 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.08259 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.23221 * 179.89189 * 24 23 22 44 44 H 1.09000 * 109.47494 * 274.70953 * 28 27 26 45 45 H 1.09001 * 109.46750 * 34.70584 * 28 27 26 46 46 H 1.08998 * 109.47052 * 154.70644 * 28 27 26 47 47 H 1.09001 * 109.59311 * 173.39416 * 29 16 15 48 48 H 1.09005 * 109.58631 * 293.67950 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1939 1.2066 -0.2751 5 6 1.5017 2.3614 0.3535 6 7 0.4323 2.3186 1.1197 7 14 2.1474 4.0041 -0.2580 8 1 1.4213 4.3924 -1.4938 9 1 1.9361 5.0388 0.7860 10 1 3.5982 3.8872 -0.5524 11 6 2.1976 -1.2688 0.0006 12 1 3.2694 -1.0706 0.0020 13 6 1.8282 -2.0749 1.2483 14 6 2.6148 -3.3877 1.2646 15 6 2.2467 -4.2143 0.0284 16 7 2.4656 -3.3945 -1.1710 17 6 3.2364 -3.8461 -2.1802 18 8 3.3397 -3.1968 -3.2047 19 6 3.9494 -5.1177 -2.0442 20 6 5.2626 -5.3007 -1.5913 21 6 6.3034 -4.4787 -1.1410 22 6 7.4864 -5.0393 -0.7698 23 6 7.6906 -6.4179 -0.8257 24 6 6.7197 -7.2696 -1.2463 25 6 5.4713 -6.7552 -1.6501 26 7 4.3447 -7.2711 -2.1093 27 7 3.4704 -6.3583 -2.3380 28 6 2.1239 -6.6195 -2.8529 29 6 1.8279 -2.0732 -1.2497 30 1 -0.3633 0.0833 1.0243 31 1 -0.3632 0.8453 -0.5843 32 1 -0.3633 -0.9288 -0.4400 33 1 -0.0207 3.1401 1.3664 34 1 0.7601 -2.2919 1.2349 35 1 2.0700 -1.4957 2.1394 36 1 2.3665 -3.9494 2.1650 37 1 3.6831 -3.1717 1.2529 38 1 1.1984 -4.5079 0.0841 39 1 2.8736 -5.1047 -0.0181 40 1 6.1678 -3.4085 -1.0881 41 1 8.2863 -4.4015 -0.4236 42 1 8.6455 -6.8200 -0.5208 43 1 6.9065 -8.3328 -1.2809 44 1 2.1551 -6.6735 -3.9411 45 1 1.7591 -7.5655 -2.4526 46 1 1.4558 -5.8141 -2.5480 47 1 2.1803 -1.5496 -2.1384 48 1 0.7456 -2.1922 -1.3008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027639344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:12 Heat of formation + Delta-G solvation = 79.453722 kcal Electronic energy + Delta-G solvation = -30640.523723 eV Core-core repulsion = 26697.463934 eV Total energy + Delta-G solvation = -3943.059789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -43.60818 -41.16524 -38.99800 -38.65921 -36.86615 -34.21740 -33.71380 -32.98578 -32.94854 -31.00354 -30.14309 -28.50573 -28.05652 -26.76239 -25.46830 -24.30241 -23.38325 -23.25755 -22.85405 -20.79289 -19.97369 -18.99721 -18.68983 -18.45766 -17.87300 -17.28937 -17.13862 -16.75383 -16.12291 -15.97417 -15.67081 -15.40463 -15.24694 -15.10531 -14.92927 -14.53545 -14.51459 -14.22973 -13.99144 -13.86506 -13.82915 -13.73304 -13.02447 -12.82757 -12.78789 -12.71130 -12.65445 -12.53491 -12.35043 -12.15750 -11.99061 -11.88773 -11.77321 -11.47497 -11.45050 -11.38164 -11.12383 -10.64171 -9.91195 -9.67112 -8.85788 -8.76083 -7.89027 -5.26600 -0.48869 0.63598 0.85149 1.26920 1.38342 1.44360 1.47406 1.55131 1.88912 2.50065 2.83716 3.05635 3.08539 3.23083 3.53787 3.81716 3.90845 3.93977 3.99298 4.00013 4.11984 4.14666 4.16645 4.23077 4.28554 4.39862 4.44860 4.49895 4.57510 4.60291 4.70471 4.76805 4.82819 4.86180 4.93385 5.05614 5.08364 5.23577 5.28117 5.34107 5.42837 5.44301 5.50384 5.56929 5.62559 5.63307 5.68504 5.98702 6.10939 6.27077 6.76025 6.80376 7.11036 7.84199 8.24910 9.14936 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.003037 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.236537 B = 9218.896503 C = 9850.149437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.606 5.606 3 C -0.268 4.268 4 H 0.064 0.936 5 C -0.043 4.043 6 N -0.925 5.925 7 Si 0.955 3.045 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.272 1.272 11 C 0.168 3.832 12 H 0.045 0.955 13 C -0.121 4.121 14 C -0.120 4.120 15 C 0.110 3.890 16 N -0.583 5.583 17 C 0.595 3.405 18 O -0.565 6.565 19 C -0.033 4.033 20 C -0.142 4.142 21 C -0.094 4.094 22 C -0.116 4.116 23 C -0.093 4.093 24 C -0.085 4.085 25 C 0.040 3.960 26 N -0.294 5.294 27 N -0.214 5.214 28 C 0.065 3.935 29 C 0.112 3.888 30 H 0.007 0.993 31 H 0.013 0.987 32 H 0.040 0.960 33 H 0.250 0.750 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.149 0.851 42 H 0.165 0.835 43 H 0.152 0.848 44 H 0.105 0.895 45 H 0.133 0.867 46 H 0.103 0.897 47 H 0.064 0.936 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.087 -23.835 -1.940 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.328 5.328 3 C -0.398 4.398 4 H 0.082 0.918 5 C -0.240 4.240 6 N -0.571 5.571 7 Si 0.784 3.216 8 H -0.216 1.216 9 H -0.220 1.220 10 H -0.197 1.197 11 C 0.060 3.940 12 H 0.064 0.936 13 C -0.161 4.161 14 C -0.159 4.159 15 C -0.012 4.012 16 N -0.314 5.314 17 C 0.380 3.620 18 O -0.443 6.443 19 C -0.169 4.169 20 C -0.151 4.151 21 C -0.114 4.114 22 C -0.135 4.135 23 C -0.115 4.115 24 C -0.105 4.105 25 C -0.104 4.104 26 N -0.131 5.131 27 N 0.002 4.998 28 C -0.073 4.073 29 C -0.012 4.012 30 H 0.025 0.975 31 H 0.032 0.968 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.167 0.833 42 H 0.182 0.818 43 H 0.170 0.830 44 H 0.123 0.877 45 H 0.152 0.848 46 H 0.121 0.879 47 H 0.083 0.917 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.318 -24.436 -2.773 25.391 hybrid contribution 0.263 2.412 -0.138 2.431 sum 6.581 -22.023 -2.912 23.169 Atomic orbital electron populations 1.20543 0.82363 0.96384 0.97819 1.44119 1.02186 1.00857 1.85624 1.19451 0.95618 0.85665 1.39085 0.91807 1.25451 0.99062 1.00698 0.98753 1.70278 1.23705 1.27081 1.36052 0.85430 0.78215 0.80427 0.77524 1.21582 1.21984 1.19733 1.20672 0.95017 0.85338 0.92970 0.93644 1.21947 1.00389 0.95706 0.98012 1.21836 1.00178 0.95603 0.98252 1.21984 1.03120 0.93157 0.82911 1.48188 1.46769 1.18238 1.18228 1.16994 0.78062 0.83824 0.83095 1.90862 1.63737 1.59471 1.30204 1.20704 0.96100 0.87149 1.12939 1.19606 0.92999 0.95732 1.06735 1.20216 0.92813 0.98623 0.99782 1.21051 0.96683 0.96195 0.99552 1.21037 0.99942 0.92497 0.98042 1.20269 0.88564 1.01297 1.00403 1.21026 0.94986 0.90732 1.03627 1.73368 1.00108 1.16967 1.22645 1.46019 1.13104 1.01245 1.39446 1.22789 0.75447 1.06795 1.02309 1.22119 0.97654 0.81487 0.99903 0.97452 0.96816 0.94188 0.94131 0.91655 0.93608 0.87982 0.92339 0.88322 0.89559 0.87053 0.83328 0.81778 0.83021 0.87693 0.84839 0.87865 0.91699 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.17 8.09 127.77 1.03 9.21 16 2 N -0.61 -29.59 2.82 -702.27 -1.98 -31.57 16 3 C -0.27 -14.86 9.59 84.03 0.81 -14.06 16 4 H 0.06 3.55 7.85 -2.91 -0.02 3.52 16 5 C -0.04 -2.43 4.85 84.86 0.41 -2.02 16 6 N -0.93 -54.07 11.07 21.65 0.24 -53.83 16 7 Si 0.96 45.58 29.62 68.60 2.03 47.62 16 8 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 9 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 C 0.17 6.61 2.74 45.08 0.12 6.73 16 12 H 0.05 1.95 7.83 -2.39 -0.02 1.94 16 13 C -0.12 -3.91 5.15 30.63 0.16 -3.76 16 14 C -0.12 -2.84 6.09 30.67 0.19 -2.65 16 15 C 0.11 2.35 6.35 86.36 0.55 2.90 16 16 N -0.58 -16.67 2.97 -823.88 -2.45 -19.12 16 17 C 0.60 18.95 6.73 86.37 0.58 19.53 16 18 O -0.57 -22.73 16.54 -4.44 -0.07 -22.81 16 19 C -0.03 -0.91 4.63 41.05 0.19 -0.72 16 20 C -0.14 -3.95 6.41 -20.07 -0.13 -4.08 16 21 C -0.09 -2.40 10.06 22.21 0.22 -2.17 16 22 C -0.12 -2.17 9.92 22.07 0.22 -1.95 16 23 C -0.09 -1.44 9.89 22.01 0.22 -1.22 16 24 C -0.08 -1.57 10.09 22.37 0.23 -1.34 16 25 C 0.04 1.00 7.53 42.07 0.32 1.32 16 26 N -0.29 -7.21 11.88 -48.85 -0.58 -7.79 16 27 N -0.21 -4.91 3.71 -355.62 -1.32 -6.23 16 28 C 0.06 0.89 11.12 127.77 1.42 2.31 16 29 C 0.11 3.88 5.77 86.36 0.50 4.38 16 30 H 0.01 0.37 7.51 -2.39 -0.02 0.35 16 31 H 0.01 0.69 7.21 -2.39 -0.02 0.67 16 32 H 0.04 1.54 6.36 -2.38 -0.02 1.53 16 33 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.06 2.02 7.71 -2.39 -0.02 2.01 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.09 1.76 6.33 -2.39 -0.02 1.74 16 40 H 0.11 3.01 8.06 -2.91 -0.02 2.99 16 41 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 43 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.10 1.31 7.56 -2.39 -0.02 1.29 16 47 H 0.06 2.64 7.03 -2.39 -0.02 2.63 16 48 H 0.08 2.61 6.49 -2.38 -0.02 2.59 16 Total: -1.00 -74.50 386.22 3.86 -70.64 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.96 Total: 10.71 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 7.03 Total: 12.39 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -6.09 Total: -118.54 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.07 Total: -22.81 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.62 kcal Total: -74.50 3.86 -70.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027639344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.092 kcal (2) G-P(sol) polarization free energy of solvation -74.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds