Wall clock time and date at job start Wed Apr 1 2020 04:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36932 * 120.00100 * 2 1 4 4 H 1.08008 * 120.00374 * 145.44542 * 3 2 1 5 5 C 1.38812 * 120.00163 * 325.44707 * 3 2 1 6 6 N 1.31617 * 119.99577 * 4.62825 * 5 3 2 7 7 Si 1.86794 * 120.00296 * 184.62806 * 5 3 2 8 8 H 1.48501 * 109.47230 * 90.00151 * 7 5 3 9 9 H 1.48505 * 109.47367 * 209.99917 * 7 5 3 10 10 H 1.48496 * 109.47452 * 329.99962 * 7 5 3 11 11 C 1.46509 * 120.00011 * 179.72200 * 2 1 3 12 12 H 1.08999 * 109.49608 * 180.21422 * 11 2 1 13 13 C 1.53042 * 109.49656 * 300.27698 * 11 2 1 14 14 C 1.53044 * 109.53770 * 181.31677 * 13 11 2 15 15 C 1.53195 * 109.30884 * 298.63853 * 14 13 11 16 16 N 1.46922 * 108.77909 * 54.63488 * 15 14 13 17 17 C 1.34772 * 120.63412 * 126.41361 * 16 15 14 18 18 O 1.21612 * 120.00307 * 174.99015 * 17 16 15 19 19 C 1.47396 * 119.99749 * 354.98783 * 17 16 15 20 20 N 1.31574 * 126.82153 * 5.66415 * 19 17 16 21 21 N 1.28382 * 111.96287 * 179.80613 * 20 19 17 22 22 C 1.46510 * 124.37164 * 180.19056 * 21 20 19 23 23 C 1.37050 * 111.25673 * 0.47253 * 21 20 19 24 24 C 1.39126 * 134.72466 * 179.69832 * 23 21 20 25 25 C 1.36688 * 119.78253 * 179.97438 * 24 23 21 26 26 C 1.38898 * 120.89087 * 0.04471 * 25 24 23 27 27 C 1.36710 * 120.52671 * 359.97438 * 26 25 24 28 28 C 1.39188 * 119.51411 * 0.02562 * 27 26 25 29 29 C 1.46932 * 118.73486 * 306.38992 * 16 15 14 30 30 H 1.09005 * 109.47188 * 94.86283 * 1 2 3 31 31 H 1.09002 * 109.47243 * 214.86240 * 1 2 3 32 32 H 1.08999 * 109.47341 * 334.86346 * 1 2 3 33 33 H 0.97001 * 120.00036 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.46008 * 301.33689 * 13 11 2 35 35 H 1.08999 * 109.46111 * 61.29367 * 13 11 2 36 36 H 1.08995 * 109.49432 * 58.58355 * 14 13 11 37 37 H 1.08994 * 109.49709 * 178.68327 * 14 13 11 38 38 H 1.08993 * 109.58221 * 174.42285 * 15 14 13 39 39 H 1.08999 * 109.58599 * 294.84084 * 15 14 13 40 40 H 1.08993 * 109.47406 * 270.31421 * 22 21 20 41 41 H 1.08996 * 109.46759 * 30.31732 * 22 21 20 42 42 H 1.08997 * 109.46619 * 150.31350 * 22 21 20 43 43 H 1.07997 * 120.11003 * 0.02562 * 24 23 21 44 44 H 1.07992 * 119.54907 * 180.02562 * 25 24 23 45 45 H 1.08005 * 119.73240 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.24845 * 179.97438 * 27 26 25 47 47 H 1.09000 * 109.58507 * 293.81627 * 29 16 15 48 48 H 1.09002 * 109.58194 * 173.39814 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0868 1.2684 0.5305 5 6 1.6392 2.2820 -0.6818 6 7 0.4550 2.2095 -1.2515 7 14 2.6332 3.8598 -0.7908 8 1 3.4928 3.8207 -2.0011 9 1 1.7111 5.0208 -0.8759 10 1 3.4857 3.9923 0.4178 11 6 2.1975 -1.2688 0.0062 12 1 3.2692 -1.0701 0.0090 13 6 1.8230 -2.0688 1.2559 14 6 2.6122 -3.3797 1.2801 15 6 2.2495 -4.2122 0.0463 16 7 2.4702 -3.3970 -1.1559 17 6 3.2448 -3.8512 -2.1610 18 8 3.3468 -3.2085 -3.1883 19 6 3.9685 -5.1269 -2.0149 20 7 3.8757 -5.9761 -1.0141 21 7 4.6320 -6.9999 -1.1814 22 6 4.7370 -8.1140 -0.2357 23 6 5.3331 -6.9132 -2.3557 24 6 6.2659 -7.7189 -3.0009 25 6 6.7872 -7.3262 -4.2019 26 6 6.3991 -6.1295 -4.7906 27 6 5.4846 -5.3187 -4.1780 28 6 4.9414 -5.6997 -2.9544 29 6 1.8300 -2.0773 -1.2419 30 1 -0.3634 -0.0871 -1.0240 31 1 -0.3634 -0.8432 0.5874 32 1 -0.3634 0.9303 0.4365 33 1 0.0984 2.9754 -1.7282 34 1 2.0608 -1.4853 2.1454 35 1 0.7553 -2.2879 1.2404 36 1 3.6801 -3.1616 1.2706 37 1 2.3625 -3.9382 2.1821 38 1 2.8801 -5.1003 0.0064 39 1 1.2017 -4.5078 0.1001 40 1 5.5235 -7.9028 0.4887 41 1 3.7876 -8.2394 0.2848 42 1 4.9780 -9.0287 -0.7773 43 1 6.5766 -8.6520 -2.5546 44 1 7.5107 -7.9548 -4.6996 45 1 6.8233 -5.8372 -5.7399 46 1 5.1863 -4.3890 -4.6396 47 1 0.7480 -2.1988 -1.2933 48 1 2.1839 -1.5568 -2.1318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027653749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:37 Heat of formation + Delta-G solvation = 102.148399 kcal Electronic energy + Delta-G solvation = -30266.860377 eV Core-core repulsion = 26324.784703 eV Total energy + Delta-G solvation = -3942.075674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.67278 -39.58980 -37.98379 -37.24594 -34.98676 -33.81581 -32.21686 -31.18846 -30.76324 -30.37321 -28.93220 -27.41395 -25.91539 -25.21940 -23.68313 -23.51230 -22.43454 -21.89541 -21.35658 -19.55338 -18.63533 -17.81970 -17.29678 -16.68280 -16.52442 -16.07749 -15.51295 -15.39194 -14.98176 -14.60040 -14.36427 -14.20086 -14.00171 -13.64664 -13.53128 -13.35540 -13.24870 -13.09798 -12.58261 -12.55018 -12.31684 -12.14802 -12.06413 -11.80445 -11.52294 -11.22072 -10.93665 -10.86295 -10.74532 -10.33103 -10.27189 -10.16544 -10.12583 -10.04036 -9.90810 -9.67843 -9.52909 -8.96252 -8.46186 -8.30049 -8.07039 -6.53999 -5.74335 -3.25960 0.66243 1.18878 1.83153 2.10251 3.21712 3.36447 3.42664 3.48812 3.49165 3.70894 4.02172 4.22141 4.50254 4.54304 4.70226 4.74944 4.79520 4.94008 5.00142 5.14105 5.22615 5.28847 5.35651 5.42525 5.48080 5.55220 5.69718 5.73651 5.81382 5.89036 6.03621 6.10184 6.14375 6.26001 6.32625 6.34639 6.35889 6.48719 6.56414 6.60930 6.72613 6.86218 6.90130 7.04089 7.11571 7.44906 7.63480 7.78064 7.82524 7.86396 8.44181 8.53198 9.30160 9.88352 10.43948 11.32345 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015924 B = 0.002902 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.934059 B = 9646.526983 C =10771.318510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.590 5.590 3 C -0.262 4.262 4 H 0.064 0.936 5 C 0.015 3.985 6 N -0.900 5.900 7 Si 0.901 3.099 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.127 4.127 15 C 0.074 3.926 16 N -0.589 5.589 17 C 0.596 3.404 18 O -0.531 6.531 19 C 0.021 3.979 20 N -0.212 5.212 21 N -0.326 5.326 22 C 0.093 3.907 23 C 0.067 3.933 24 C -0.124 4.124 25 C -0.083 4.083 26 C -0.145 4.145 27 C -0.038 4.038 28 C -0.111 4.111 29 C 0.100 3.900 30 H 0.016 0.984 31 H -0.007 1.007 32 H 0.057 0.943 33 H 0.254 0.746 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.129 0.871 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.140 0.860 47 H 0.063 0.937 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.835 -25.194 0.571 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.312 5.312 3 C -0.392 4.392 4 H 0.082 0.918 5 C -0.185 4.185 6 N -0.543 5.543 7 Si 0.730 3.270 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.174 4.174 14 C -0.166 4.166 15 C -0.049 4.049 16 N -0.322 5.322 17 C 0.381 3.619 18 O -0.406 6.406 19 C -0.150 4.150 20 N -0.040 5.040 21 N -0.117 5.117 22 C -0.047 4.047 23 C -0.045 4.045 24 C -0.145 4.145 25 C -0.104 4.104 26 C -0.165 4.165 27 C -0.058 4.058 28 C -0.118 4.118 29 C -0.023 4.023 30 H 0.035 0.965 31 H 0.012 0.988 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.158 0.842 47 H 0.081 0.919 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.214 -24.972 1.073 26.639 hybrid contribution 0.738 0.892 -0.624 1.316 sum 9.952 -24.080 0.449 26.059 Atomic orbital electron populations 1.20806 0.82939 0.97258 0.97388 1.43792 1.01626 0.99933 1.85883 1.19122 1.05508 0.88228 1.26331 0.91827 1.25361 0.96924 0.99277 0.96927 1.70017 1.16330 1.30284 1.37696 0.86321 0.79676 0.82844 0.78115 1.21157 1.21695 1.20438 1.20676 0.96503 0.86253 0.90600 0.91753 1.22086 0.99680 0.95167 1.00421 1.21856 1.00718 0.97049 0.96939 1.22663 1.02383 0.95882 0.84009 1.48122 1.47419 1.19104 1.17523 1.16803 0.78910 0.82455 0.83760 1.90801 1.64281 1.57423 1.28097 1.22991 1.02151 0.97111 0.92708 1.72612 1.12530 0.96159 1.22724 1.45385 1.32549 1.17005 1.16768 1.22076 1.04863 0.85750 0.92032 1.19158 0.98624 0.97659 0.89048 1.19721 0.98386 0.99806 0.96584 1.20729 0.98822 0.96519 0.94321 1.20842 0.99391 0.95164 1.01060 1.20476 0.93706 0.99646 0.91961 1.19429 1.00227 0.94830 0.97306 1.22570 0.96830 0.80438 1.02471 0.96518 0.98845 0.92456 0.93565 0.91956 0.92308 0.92103 0.91556 0.85475 0.92028 0.90094 0.88542 0.89077 0.85719 0.85258 0.85261 0.84205 0.91881 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 7.98 59.84 0.48 4.47 16 2 N -0.59 -15.09 2.80 -173.35 -0.49 -15.57 16 3 C -0.26 -7.36 9.45 -15.06 -0.14 -7.50 16 4 H 0.06 1.77 7.83 -52.48 -0.41 1.35 16 5 C 0.01 0.42 5.33 -17.43 -0.09 0.33 16 6 N -0.90 -26.55 10.71 55.49 0.59 -25.95 16 7 Si 0.90 22.24 29.56 -169.99 -5.02 17.21 16 8 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 C 0.17 3.63 2.75 -67.81 -0.19 3.44 16 12 H 0.06 1.47 7.89 -51.93 -0.41 1.06 16 13 C -0.13 -2.37 5.10 -26.69 -0.14 -2.50 16 14 C -0.13 -1.82 6.08 -26.61 -0.16 -1.98 16 15 C 0.07 1.08 6.33 -3.71 -0.02 1.06 16 16 N -0.59 -10.57 2.97 -174.05 -0.52 -11.09 16 17 C 0.60 11.15 7.69 -12.53 -0.10 11.06 16 18 O -0.53 -11.50 15.87 5.27 0.08 -11.42 16 19 C 0.02 0.33 7.09 -80.76 -0.57 -0.24 16 20 N -0.21 -2.83 8.17 34.46 0.28 -2.54 16 21 N -0.33 -3.49 3.74 -65.49 -0.24 -3.73 16 22 C 0.09 0.50 11.24 59.85 0.67 1.17 16 23 C 0.07 0.78 6.85 -84.21 -0.58 0.20 16 24 C -0.12 -1.07 9.94 -39.81 -0.40 -1.46 16 25 C -0.08 -0.68 9.96 -39.90 -0.40 -1.08 16 26 C -0.15 -1.42 9.98 -39.89 -0.40 -1.82 16 27 C -0.04 -0.49 9.88 -39.78 -0.39 -0.88 16 28 C -0.11 -1.59 6.34 -105.05 -0.67 -2.26 16 29 C 0.10 2.08 5.78 -3.71 -0.02 2.06 16 30 H 0.02 0.44 7.79 -51.93 -0.40 0.04 16 31 H -0.01 -0.15 6.46 -51.93 -0.34 -0.48 16 32 H 0.06 1.55 6.99 -51.93 -0.36 1.18 16 33 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.03 6.74 -51.93 -0.35 0.68 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.13 1.72 3.72 -115.58 -0.43 1.29 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.27 8.09 -51.93 -0.42 -0.15 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 46 H 0.14 1.93 7.67 -52.48 -0.40 1.53 16 47 H 0.06 1.32 7.52 -51.93 -0.39 0.93 16 48 H 0.09 2.21 7.03 -51.93 -0.37 1.84 16 LS Contribution 381.98 15.07 5.76 5.76 Total: -1.00 -34.06 381.98 -9.89 -43.95 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.22 Total: -0.66 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -3.11 Total: 4.05 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.37 Total: -58.89 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.06 -9.89 -43.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027653749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.096 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds