Wall clock time and date at job start Wed Apr 1 2020 03:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99656 * 2 1 4 4 O 1.21285 * 119.99622 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.00402 * 0.02562 * 3 2 1 6 6 C 1.50697 * 109.47423 * 180.02562 * 5 3 2 7 7 N 1.30246 * 126.10330 * 269.68725 * 6 5 3 8 8 N 1.39874 * 110.08555 * 179.83540 * 7 6 5 9 9 C 1.46501 * 125.46043 * 180.15926 * 8 7 6 10 10 C 1.37041 * 109.07668 * 0.43588 * 8 7 6 11 11 C 1.39283 * 133.84997 * 179.69430 * 10 8 7 12 12 C 1.36592 * 119.85221 * 180.02562 * 11 10 8 13 13 C 1.38963 * 120.81638 * 0.04749 * 12 11 10 14 14 C 1.36469 * 120.62544 * 359.97438 * 13 12 11 15 15 C 1.39946 * 119.64061 * 359.97438 * 14 13 12 16 16 C 1.46495 * 120.00165 * 180.02562 * 2 1 3 17 17 H 1.08999 * 110.64188 * 178.30992 * 16 2 1 18 18 C 1.55161 * 110.71834 * 54.97545 * 16 2 1 19 19 C 1.54914 * 101.58226 * 277.13802 * 18 16 2 20 20 N 1.47431 * 104.83253 * 322.99290 * 19 18 16 21 21 C 1.36936 * 125.64527 * 204.16465 * 20 19 18 22 22 H 1.07993 * 120.00123 * 342.04920 * 21 20 19 23 23 C 1.38810 * 119.99509 * 162.05245 * 21 20 19 24 24 N 1.31627 * 120.00070 * 156.86259 * 23 21 20 25 25 Si 1.86797 * 120.00458 * 336.86484 * 23 21 20 26 26 H 1.48505 * 109.46972 * 84.83770 * 25 23 21 27 27 H 1.48498 * 109.47214 * 204.83739 * 25 23 21 28 28 H 1.48502 * 109.47242 * 324.83796 * 25 23 21 29 29 C 1.47021 * 108.69970 * 24.12477 * 20 19 18 30 30 H 1.08997 * 109.47342 * 89.99673 * 1 2 3 31 31 H 1.09002 * 109.47003 * 210.00274 * 1 2 3 32 32 H 1.08999 * 109.47190 * 330.00184 * 1 2 3 33 33 H 1.09007 * 109.46858 * 299.99913 * 5 3 2 34 34 H 1.08994 * 109.47220 * 59.99541 * 5 3 2 35 35 H 1.08996 * 109.47189 * 270.31514 * 9 8 7 36 36 H 1.08993 * 109.47178 * 30.32172 * 9 8 7 37 37 H 1.09001 * 109.46877 * 150.32088 * 9 8 7 38 38 H 1.07998 * 120.06973 * 0.05922 * 11 10 8 39 39 H 1.07999 * 119.58885 * 180.02562 * 12 11 10 40 40 H 1.07993 * 119.68790 * 179.97438 * 13 12 11 41 41 H 1.08007 * 120.17973 * 180.02562 * 14 13 12 42 42 H 1.09001 * 111.00463 * 35.21211 * 18 16 2 43 43 H 1.09002 * 111.00135 * 159.06832 * 18 16 2 44 44 H 1.08997 * 110.36825 * 204.15084 * 19 18 16 45 45 H 1.08997 * 110.45511 * 81.87811 * 19 18 16 46 46 H 0.97000 * 120.00332 * 180.02562 * 24 23 21 47 47 H 1.09003 * 109.88073 * 239.51914 * 29 20 19 48 48 H 1.09005 * 109.88058 * 118.36476 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3646 3.6178 -0.0002 7 7 2.8597 4.2049 1.0518 8 7 3.7375 5.2230 0.6651 9 6 4.4826 6.0945 1.5770 10 6 3.7841 5.2785 -0.7033 11 6 4.4680 6.0806 -1.6138 12 6 4.2984 5.8837 -2.9548 13 6 3.4487 4.8906 -3.4266 14 6 2.7653 4.0899 -2.5581 15 6 2.9230 4.2711 -1.1794 16 6 2.1975 -1.2687 -0.0006 17 1 3.2726 -1.0916 -0.0306 18 6 1.7507 -2.1600 -1.1894 19 6 0.4719 -2.8220 -0.6183 20 7 0.7745 -3.0624 0.8044 21 6 0.1821 -4.0086 1.5974 22 1 -0.7553 -4.4538 1.2985 23 6 0.7865 -4.3955 2.7857 24 7 0.0636 -4.9246 3.7500 25 14 2.6258 -4.1650 3.0163 26 1 2.8960 -2.7838 3.4902 27 1 3.1247 -5.1392 4.0200 28 1 3.3189 -4.3888 1.7222 29 6 1.8183 -2.1187 1.2303 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 0.7584 2.5302 -0.8892 34 1 0.7590 2.5299 0.8907 35 1 3.8860 6.9782 1.8036 36 1 4.6986 5.5556 2.4994 37 1 5.4176 6.3984 1.1063 38 1 5.1312 6.8561 -1.2602 39 1 4.8311 6.5078 -3.6570 40 1 3.3279 4.7510 -4.4907 41 1 2.1070 3.3199 -2.9328 42 1 1.5193 -1.5549 -2.0660 43 1 2.5076 -2.9089 -1.4223 44 1 0.2724 -3.7644 -1.1283 45 1 -0.3811 -2.1505 -0.7166 46 1 0.4858 -5.1946 4.5805 47 1 2.6909 -2.6668 1.5856 48 1 1.4350 -1.4746 2.0218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033081429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:18 Heat of formation + Delta-G solvation = 106.200522 kcal Electronic energy + Delta-G solvation = -29945.463937 eV Core-core repulsion = 26003.563976 eV Total energy + Delta-G solvation = -3941.899961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.50662 -40.00413 -37.81007 -37.35917 -34.55485 -34.28469 -32.31466 -30.71543 -30.55112 -29.99168 -29.38427 -28.50293 -26.43203 -25.79864 -24.15101 -23.18067 -22.17139 -21.59272 -20.34487 -19.88737 -18.76913 -17.36285 -17.25936 -17.06389 -16.80074 -16.16276 -15.67447 -15.50747 -15.42320 -15.15452 -14.51026 -14.27824 -14.04546 -13.58423 -13.53216 -13.26627 -13.22600 -12.99680 -12.89069 -12.74736 -12.39759 -12.31830 -12.19934 -12.02552 -11.83561 -11.55346 -11.31633 -11.26631 -11.17532 -10.81703 -10.73374 -10.68925 -10.36205 -10.18048 -10.07207 -9.60166 -9.34482 -8.84045 -8.67645 -8.36634 -8.02854 -7.08387 -5.97119 -3.26449 0.76175 1.32142 2.14644 2.25607 2.71907 3.17165 3.37637 3.49235 3.51695 3.61700 4.12069 4.26392 4.41482 4.54245 4.62805 4.74072 4.80290 4.93297 4.94511 4.96982 5.12279 5.13660 5.17721 5.18453 5.24936 5.29898 5.34954 5.38918 5.46821 5.59108 5.61228 5.66992 5.79484 5.90785 5.92852 6.04626 6.12808 6.23032 6.27527 6.31345 6.34694 6.51404 6.52438 6.62145 6.73693 6.85818 6.88098 7.48934 7.54843 7.68127 8.28682 8.29306 8.80939 9.67266 10.14914 11.19215 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.002715 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.997485 B =10309.713009 C =11028.804654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.596 5.596 3 C 0.518 3.482 4 O -0.536 6.536 5 C -0.061 4.061 6 C 0.123 3.877 7 N -0.239 5.239 8 N -0.409 5.409 9 C 0.112 3.888 10 C 0.128 3.872 11 C -0.143 4.143 12 C -0.072 4.072 13 C -0.163 4.163 14 C -0.035 4.035 15 C -0.164 4.164 16 C 0.128 3.872 17 H 0.104 0.896 18 C -0.143 4.143 19 C 0.125 3.875 20 N -0.609 5.609 21 C -0.244 4.244 22 H 0.094 0.906 23 C 0.024 3.976 24 N -0.906 5.906 25 Si 0.885 3.115 26 H -0.286 1.286 27 H -0.304 1.304 28 H -0.279 1.279 29 C 0.111 3.889 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.049 0.951 45 H 0.036 0.964 46 H 0.263 0.737 47 H 0.035 0.965 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.585 24.135 -13.668 28.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.329 5.329 3 C 0.305 3.695 4 O -0.413 6.413 5 C -0.102 4.102 6 C -0.055 4.055 7 N -0.051 5.051 8 N -0.197 5.197 9 C -0.029 4.029 10 C 0.014 3.986 11 C -0.165 4.165 12 C -0.092 4.092 13 C -0.183 4.183 14 C -0.056 4.056 15 C -0.172 4.172 16 C 0.024 3.976 17 H 0.122 0.878 18 C -0.182 4.182 19 C -0.001 4.001 20 N -0.336 5.336 21 C -0.371 4.371 22 H 0.112 0.888 23 C -0.175 4.175 24 N -0.549 5.549 25 Si 0.717 3.283 26 H -0.214 1.214 27 H -0.232 1.232 28 H -0.205 1.205 29 C -0.015 4.015 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.052 0.948 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.288 24.140 -11.999 27.471 hybrid contribution 1.182 0.042 -0.389 1.245 sum 6.470 24.182 -12.388 27.930 Atomic orbital electron populations 1.22158 0.79100 1.04741 1.01901 1.47761 1.07323 1.05253 1.72542 1.20233 0.87946 0.84775 0.76569 1.90715 1.13822 1.87161 1.49572 1.20084 0.95885 0.88038 1.06227 1.22657 0.97631 0.96211 0.89045 1.76567 1.04916 1.00380 1.23281 1.48070 1.39073 1.29845 1.02701 1.21724 0.94931 0.92560 0.93714 1.18823 0.97898 0.97353 0.84558 1.19777 1.03132 1.01536 0.92096 1.20691 0.97040 0.97135 0.94364 1.20636 1.00005 0.97915 0.99728 1.20355 0.97413 0.97483 0.90302 1.19695 1.03407 0.99898 0.94155 1.22092 0.97094 0.82195 0.96223 0.87777 1.23126 0.99809 0.98625 0.96659 1.21890 0.94436 0.98147 0.85586 1.44837 1.44908 1.37715 1.06168 1.18622 1.02786 1.15267 1.00386 0.88824 1.24945 0.97576 0.98908 0.96063 1.69844 1.34701 1.45789 1.04604 0.86957 0.88268 0.76481 0.76622 1.21378 1.23188 1.20538 1.22008 0.92940 0.91582 0.94944 0.92483 0.88018 0.91574 0.86562 0.86646 0.91309 0.89370 0.89896 0.85959 0.85479 0.85631 0.85624 0.91099 0.90334 0.93290 0.94595 0.92682 0.94791 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 8.34 59.85 0.50 1.29 16 2 N -0.60 -9.15 2.82 -171.84 -0.49 -9.63 16 3 C 0.52 8.10 7.67 -10.99 -0.08 8.02 16 4 O -0.54 -10.55 15.40 5.55 0.09 -10.47 16 5 C -0.06 -0.72 4.85 -29.04 -0.14 -0.86 16 6 C 0.12 1.73 5.92 -80.19 -0.48 1.25 16 7 N -0.24 -3.64 12.40 34.84 0.43 -3.21 16 8 N -0.41 -5.30 4.05 -65.47 -0.27 -5.56 16 9 C 0.11 0.92 11.40 59.85 0.68 1.61 16 10 C 0.13 1.62 6.87 -84.17 -0.58 1.04 16 11 C -0.14 -1.39 9.97 -39.79 -0.40 -1.78 16 12 C -0.07 -0.60 9.96 -39.91 -0.40 -1.00 16 13 C -0.16 -1.46 9.97 -39.95 -0.40 -1.86 16 14 C -0.04 -0.38 10.07 -39.58 -0.40 -0.77 16 15 C -0.16 -2.16 6.33 -105.21 -0.67 -2.83 16 16 C 0.13 2.29 3.58 -66.10 -0.24 2.06 16 17 H 0.10 1.98 6.99 -51.93 -0.36 1.61 16 18 C -0.14 -2.28 6.53 -24.58 -0.16 -2.44 16 19 C 0.12 2.27 6.35 -2.52 -0.02 2.25 16 20 N -0.61 -14.15 2.79 -170.07 -0.47 -14.62 16 21 C -0.24 -6.74 10.57 -15.06 -0.16 -6.90 16 22 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 23 C 0.02 0.70 5.44 -17.43 -0.09 0.60 16 24 N -0.91 -27.82 13.97 55.49 0.78 -27.05 16 25 Si 0.88 23.23 24.38 -169.99 -4.14 19.08 16 26 H -0.29 -7.45 6.85 56.52 0.39 -7.07 16 27 H -0.30 -8.06 7.11 56.52 0.40 -7.65 16 28 H -0.28 -7.20 6.86 56.52 0.39 -6.81 16 29 C 0.11 2.45 4.25 -3.07 -0.01 2.44 16 30 H 0.06 0.57 7.99 -51.93 -0.41 0.16 16 31 H 0.10 1.59 5.19 -51.93 -0.27 1.32 16 32 H 0.07 0.65 6.44 -51.93 -0.33 0.32 16 33 H 0.12 0.96 8.11 -51.93 -0.42 0.54 16 34 H 0.12 1.19 7.40 -51.93 -0.38 0.81 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.04 0.59 5.54 -51.93 -0.29 0.31 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.03 0.84 3.32 -51.93 -0.17 0.67 16 48 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -36.82 381.16 -8.25 -45.06 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.88 Total: -1.47 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -3.03 Total: 2.12 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.02 Total: -60.07 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.14 Total: 19.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.82 -8.25 -45.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033081429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.264 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds