Wall clock time and date at job start Wed Apr 1 2020 03:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99656 * 2 1 4 4 O 1.21285 * 119.99622 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.00402 * 0.02562 * 3 2 1 6 6 C 1.50697 * 109.47423 * 180.02562 * 5 3 2 7 7 N 1.30246 * 126.10330 * 269.68725 * 6 5 3 8 8 N 1.39874 * 110.08555 * 179.83540 * 7 6 5 9 9 C 1.46501 * 125.46043 * 180.15926 * 8 7 6 10 10 C 1.37041 * 109.07668 * 0.43588 * 8 7 6 11 11 C 1.39283 * 133.84997 * 179.69430 * 10 8 7 12 12 C 1.36592 * 119.85221 * 180.02562 * 11 10 8 13 13 C 1.38963 * 120.81638 * 0.04749 * 12 11 10 14 14 C 1.36469 * 120.62544 * 359.97438 * 13 12 11 15 15 C 1.39946 * 119.64061 * 359.97438 * 14 13 12 16 16 C 1.46495 * 120.00165 * 180.02562 * 2 1 3 17 17 H 1.08999 * 110.64188 * 178.30992 * 16 2 1 18 18 C 1.55161 * 110.71834 * 54.97545 * 16 2 1 19 19 C 1.54914 * 101.58226 * 277.13802 * 18 16 2 20 20 N 1.47431 * 104.83253 * 322.99290 * 19 18 16 21 21 C 1.36936 * 125.64527 * 204.16465 * 20 19 18 22 22 H 1.07993 * 120.00123 * 342.04920 * 21 20 19 23 23 C 1.38810 * 119.99509 * 162.05245 * 21 20 19 24 24 N 1.31627 * 120.00070 * 156.86259 * 23 21 20 25 25 Si 1.86797 * 120.00458 * 336.86484 * 23 21 20 26 26 H 1.48505 * 109.46972 * 84.83770 * 25 23 21 27 27 H 1.48498 * 109.47214 * 204.83739 * 25 23 21 28 28 H 1.48502 * 109.47242 * 324.83796 * 25 23 21 29 29 C 1.47021 * 108.69970 * 24.12477 * 20 19 18 30 30 H 1.08997 * 109.47342 * 89.99673 * 1 2 3 31 31 H 1.09002 * 109.47003 * 210.00274 * 1 2 3 32 32 H 1.08999 * 109.47190 * 330.00184 * 1 2 3 33 33 H 1.09007 * 109.46858 * 299.99913 * 5 3 2 34 34 H 1.08994 * 109.47220 * 59.99541 * 5 3 2 35 35 H 1.08996 * 109.47189 * 270.31514 * 9 8 7 36 36 H 1.08993 * 109.47178 * 30.32172 * 9 8 7 37 37 H 1.09001 * 109.46877 * 150.32088 * 9 8 7 38 38 H 1.07998 * 120.06973 * 0.05922 * 11 10 8 39 39 H 1.07999 * 119.58885 * 180.02562 * 12 11 10 40 40 H 1.07993 * 119.68790 * 179.97438 * 13 12 11 41 41 H 1.08007 * 120.17973 * 180.02562 * 14 13 12 42 42 H 1.09001 * 111.00463 * 35.21211 * 18 16 2 43 43 H 1.09002 * 111.00135 * 159.06832 * 18 16 2 44 44 H 1.08997 * 110.36825 * 204.15084 * 19 18 16 45 45 H 1.08997 * 110.45511 * 81.87811 * 19 18 16 46 46 H 0.97000 * 120.00332 * 180.02562 * 24 23 21 47 47 H 1.09003 * 109.88073 * 239.51914 * 29 20 19 48 48 H 1.09005 * 109.88058 * 118.36476 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3646 3.6178 -0.0002 7 7 2.8597 4.2049 1.0518 8 7 3.7375 5.2230 0.6651 9 6 4.4826 6.0945 1.5770 10 6 3.7841 5.2785 -0.7033 11 6 4.4680 6.0806 -1.6138 12 6 4.2984 5.8837 -2.9548 13 6 3.4487 4.8906 -3.4266 14 6 2.7653 4.0899 -2.5581 15 6 2.9230 4.2711 -1.1794 16 6 2.1975 -1.2687 -0.0006 17 1 3.2726 -1.0916 -0.0306 18 6 1.7507 -2.1600 -1.1894 19 6 0.4719 -2.8220 -0.6183 20 7 0.7745 -3.0624 0.8044 21 6 0.1821 -4.0086 1.5974 22 1 -0.7553 -4.4538 1.2985 23 6 0.7865 -4.3955 2.7857 24 7 0.0636 -4.9246 3.7500 25 14 2.6258 -4.1650 3.0163 26 1 2.8960 -2.7838 3.4902 27 1 3.1247 -5.1392 4.0200 28 1 3.3189 -4.3888 1.7222 29 6 1.8183 -2.1187 1.2303 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 0.7584 2.5302 -0.8892 34 1 0.7590 2.5299 0.8907 35 1 3.8860 6.9782 1.8036 36 1 4.6986 5.5556 2.4994 37 1 5.4176 6.3984 1.1063 38 1 5.1312 6.8561 -1.2602 39 1 4.8311 6.5078 -3.6570 40 1 3.3279 4.7510 -4.4907 41 1 2.1070 3.3199 -2.9328 42 1 1.5193 -1.5549 -2.0660 43 1 2.5076 -2.9089 -1.4223 44 1 0.2724 -3.7644 -1.1283 45 1 -0.3811 -2.1505 -0.7166 46 1 0.4858 -5.1946 4.5805 47 1 2.6909 -2.6668 1.5856 48 1 1.4350 -1.4746 2.0218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033081429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:17 Heat of formation + Delta-G solvation = 81.481826 kcal Electronic energy + Delta-G solvation = -29946.535820 eV Core-core repulsion = 26003.563976 eV Total energy + Delta-G solvation = -3942.971844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.33940 -41.28328 -39.26807 -38.11692 -36.02959 -35.16271 -34.23524 -31.98208 -31.32267 -30.88567 -30.68430 -29.92146 -27.67025 -26.71568 -25.93182 -23.96419 -23.14447 -22.68205 -22.02365 -20.93662 -19.93805 -18.98010 -18.42552 -18.03851 -17.92987 -17.47515 -17.19174 -16.59976 -16.40191 -16.10505 -15.64605 -15.31284 -15.19472 -14.97961 -14.95147 -14.74264 -14.24442 -14.16842 -13.81822 -13.81237 -13.58583 -13.38906 -13.27949 -13.21917 -13.06119 -12.92705 -12.73272 -12.61911 -12.39214 -12.25163 -12.08346 -11.95599 -11.86518 -11.67867 -11.48063 -11.06484 -10.79632 -10.70686 -9.67493 -9.63634 -9.07122 -8.80132 -8.22029 -5.44672 -0.00312 0.58176 1.24051 1.28315 1.31680 1.39295 1.45108 1.54754 2.04643 2.36046 2.87742 2.98821 3.30434 3.32320 3.47060 3.57198 3.69483 3.73571 3.82754 4.09691 4.15242 4.17174 4.26785 4.30465 4.35032 4.36739 4.43891 4.48685 4.53751 4.55233 4.61043 4.65073 4.70987 4.76834 4.86971 4.95556 4.96558 5.01816 5.09138 5.13243 5.29330 5.39744 5.52760 5.55829 5.62487 5.67235 5.93311 6.08929 6.13431 6.38370 6.60757 6.73274 7.10013 7.51907 8.08717 8.98177 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.002715 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.997485 B =10309.713009 C =11028.804654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.594 5.594 3 C 0.519 3.481 4 O -0.583 6.583 5 C -0.052 4.052 6 C 0.108 3.892 7 N -0.283 5.283 8 N -0.419 5.419 9 C 0.104 3.896 10 C 0.104 3.896 11 C -0.152 4.152 12 C -0.068 4.068 13 C -0.162 4.162 14 C -0.051 4.051 15 C -0.193 4.193 16 C 0.136 3.864 17 H 0.092 0.908 18 C -0.125 4.125 19 C 0.120 3.880 20 N -0.621 5.621 21 C -0.222 4.222 22 H 0.075 0.925 23 C -0.031 4.031 24 N -0.950 5.950 25 Si 0.938 3.062 26 H -0.291 1.291 27 H -0.309 1.309 28 H -0.274 1.274 29 C 0.111 3.889 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.157 0.843 34 H 0.129 0.871 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.142 0.858 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.050 0.950 45 H 0.064 0.936 46 H 0.261 0.739 47 H 0.011 0.989 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.751 26.660 -17.165 32.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.326 5.326 3 C 0.307 3.693 4 O -0.463 6.463 5 C -0.093 4.093 6 C -0.070 4.070 7 N -0.096 5.096 8 N -0.208 5.208 9 C -0.036 4.036 10 C -0.010 4.010 11 C -0.173 4.173 12 C -0.088 4.088 13 C -0.181 4.181 14 C -0.071 4.071 15 C -0.201 4.201 16 C 0.031 3.969 17 H 0.110 0.890 18 C -0.164 4.164 19 C -0.003 4.003 20 N -0.349 5.349 21 C -0.351 4.351 22 H 0.093 0.907 23 C -0.226 4.226 24 N -0.597 5.597 25 Si 0.770 3.230 26 H -0.219 1.219 27 H -0.238 1.238 28 H -0.200 1.200 29 C -0.015 4.015 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.174 0.826 34 H 0.147 0.853 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.163 0.837 39 H 0.179 0.821 40 H 0.172 0.828 41 H 0.160 0.840 42 H 0.127 0.873 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.029 0.971 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 5.438 26.693 -15.543 31.363 hybrid contribution 1.098 -0.636 0.591 1.400 sum 6.537 26.056 -14.952 30.744 Atomic orbital electron populations 1.22344 0.77060 1.04568 1.04187 1.47799 1.08432 1.04223 1.72185 1.20847 0.87522 0.85738 0.75172 1.90696 1.16081 1.87810 1.51690 1.20182 0.95415 0.85014 1.08718 1.23018 0.97960 0.96620 0.89386 1.76439 1.06461 1.01970 1.24756 1.48371 1.39005 1.29820 1.03586 1.22005 0.95902 0.92458 0.93279 1.19309 0.98756 0.98240 0.84744 1.20164 1.03149 1.01700 0.92317 1.21169 0.96322 0.96892 0.94435 1.21067 0.98951 0.97098 1.00981 1.20662 0.98344 0.98523 0.89555 1.20036 1.04331 1.00600 0.95092 1.21800 0.96903 0.83214 0.94975 0.88990 1.23061 0.98234 0.98301 0.96814 1.22153 0.96548 0.99112 0.82515 1.44913 1.44726 1.36847 1.08374 1.18645 1.01852 1.14367 1.00204 0.90746 1.25437 1.00370 1.00325 0.96493 1.69938 1.35844 1.48650 1.05280 0.86087 0.84746 0.75749 0.76379 1.21867 1.23806 1.19991 1.21957 0.91474 0.91436 0.96629 0.88821 0.91211 0.88814 0.82552 0.85332 0.89690 0.89929 0.87659 0.83672 0.82107 0.82844 0.84030 0.87265 0.90354 0.93157 0.91808 0.92984 0.97147 0.95716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.29 8.34 127.77 1.07 2.36 16 2 N -0.59 -16.94 2.82 -815.96 -2.30 -19.25 16 3 C 0.52 15.44 7.67 87.66 0.67 16.11 16 4 O -0.58 -22.90 15.40 -3.04 -0.05 -22.95 16 5 C -0.05 -1.13 4.85 29.10 0.14 -0.99 16 6 C 0.11 2.97 5.92 44.78 0.27 3.23 16 7 N -0.28 -8.72 12.40 -43.70 -0.54 -9.27 16 8 N -0.42 -10.82 4.05 -361.05 -1.46 -12.28 16 9 C 0.10 1.67 11.40 127.77 1.46 3.12 16 10 C 0.10 2.52 6.87 39.21 0.27 2.79 16 11 C -0.15 -2.58 9.97 22.14 0.22 -2.36 16 12 C -0.07 -0.91 9.96 22.06 0.22 -0.69 16 13 C -0.16 -2.35 9.97 22.03 0.22 -2.13 16 14 C -0.05 -0.96 10.07 22.27 0.22 -0.74 16 15 C -0.19 -4.88 6.33 -20.24 -0.13 -5.01 16 16 C 0.14 4.70 3.58 46.18 0.17 4.86 16 17 H 0.09 3.45 6.99 -2.39 -0.02 3.44 16 18 C -0.13 -3.60 6.53 31.99 0.21 -3.39 16 19 C 0.12 4.08 6.35 86.86 0.55 4.63 16 20 N -0.62 -28.56 2.79 -691.98 -1.93 -30.49 16 21 C -0.22 -12.42 10.57 84.03 0.89 -11.53 16 22 H 0.07 4.39 8.06 -2.91 -0.02 4.37 16 23 C -0.03 -1.86 5.44 84.86 0.46 -1.40 16 24 N -0.95 -60.12 13.97 21.65 0.30 -59.82 16 25 Si 0.94 49.60 24.38 68.60 1.67 51.27 16 26 H -0.29 -15.35 6.85 99.48 0.68 -14.66 16 27 H -0.31 -16.43 7.11 99.48 0.71 -15.73 16 28 H -0.27 -13.99 6.86 99.48 0.68 -13.31 16 29 C 0.11 4.91 4.25 86.73 0.37 5.28 16 30 H 0.09 1.38 7.99 -2.39 -0.02 1.36 16 31 H 0.07 2.02 5.19 -2.39 -0.01 2.01 16 32 H 0.09 1.51 6.44 -2.39 -0.02 1.50 16 33 H 0.16 1.98 8.11 -2.38 -0.02 1.96 16 34 H 0.13 2.39 7.40 -2.39 -0.02 2.37 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 42 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 45 H 0.06 1.87 5.54 -2.39 -0.01 1.85 16 46 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 47 H 0.01 0.55 3.32 -2.39 -0.01 0.54 16 48 H 0.02 1.19 8.04 -2.38 -0.02 1.17 16 Total: -1.00 -84.84 381.16 3.89 -80.95 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.93 Total: 7.69 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 7.27 Total: 14.14 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -5.93 Total: -131.10 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.05 Total: -22.95 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.67 Total: 51.27 kcal Total: -84.84 3.89 -80.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033081429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.431 kcal (2) G-P(sol) polarization free energy of solvation -84.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds