Wall clock time and date at job start Wed Apr 1 2020 03:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 119.99986 * 2 1 4 4 O 1.21288 * 119.99686 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00260 * 359.97438 * 3 2 1 6 6 C 1.50702 * 109.47256 * 180.02562 * 5 3 2 7 7 N 1.30243 * 126.10827 * 89.97620 * 6 5 3 8 8 N 1.39870 * 110.08549 * 180.02562 * 7 6 5 9 9 C 1.46500 * 125.46016 * 180.02562 * 8 7 6 10 10 C 1.37041 * 109.07848 * 0.02562 * 8 7 6 11 11 C 1.39281 * 133.84804 * 179.97438 * 10 8 7 12 12 C 1.36587 * 119.85307 * 180.02562 * 11 10 8 13 13 C 1.38965 * 120.81495 * 359.97228 * 12 11 10 14 14 C 1.36469 * 120.62719 * 0.02562 * 13 12 11 15 15 C 1.39943 * 119.63481 * 0.02562 * 14 13 12 16 16 C 1.46505 * 119.99815 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.88587 * 179.29898 * 16 2 1 18 18 C 1.55160 * 111.00304 * 303.18337 * 16 2 1 19 19 C 1.54326 * 102.93643 * 153.57694 * 18 16 2 20 20 N 1.47017 * 107.27538 * 337.80285 * 19 18 16 21 21 C 1.36932 * 125.65130 * 178.97978 * 20 19 18 22 22 H 1.07998 * 120.00518 * 179.97438 * 21 20 19 23 23 C 1.38812 * 119.99842 * 359.97404 * 21 20 19 24 24 N 1.31619 * 120.00144 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99982 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47109 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47375 * 119.99720 * 25 23 21 28 28 H 1.48507 * 109.47070 * 239.99854 * 25 23 21 29 29 C 1.47470 * 108.71998 * 358.97595 * 20 19 18 30 30 H 1.08998 * 109.47126 * 90.00296 * 1 2 3 31 31 H 1.09000 * 109.47178 * 210.00590 * 1 2 3 32 32 H 1.09003 * 109.46755 * 330.00650 * 1 2 3 33 33 H 1.08994 * 109.46762 * 60.00537 * 5 3 2 34 34 H 1.08998 * 109.47101 * 300.00648 * 5 3 2 35 35 H 1.08994 * 109.47534 * 269.98207 * 9 8 7 36 36 H 1.09003 * 109.46907 * 29.98126 * 9 8 7 37 37 H 1.09007 * 109.47261 * 149.97448 * 9 8 7 38 38 H 1.08002 * 120.07412 * 359.97330 * 11 10 8 39 39 H 1.08000 * 119.59865 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.69032 * 179.74591 * 13 12 11 41 41 H 1.07996 * 120.18086 * 179.97438 * 14 13 12 42 42 H 1.09000 * 110.71487 * 271.93484 * 18 16 2 43 43 H 1.08993 * 110.72042 * 35.03363 * 18 16 2 44 44 H 1.09000 * 109.88226 * 97.22410 * 19 18 16 45 45 H 1.09007 * 109.87730 * 218.23114 * 19 18 16 46 46 H 0.96999 * 120.00048 * 179.97438 * 24 23 21 47 47 H 1.08998 * 110.35080 * 265.25008 * 29 20 19 48 48 H 1.09008 * 110.40450 * 142.91423 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3648 3.6177 -0.0011 7 7 2.8639 4.2003 -1.0536 8 7 3.7378 5.2220 -0.6680 9 6 4.4827 6.0928 -1.5807 10 6 3.7856 5.2779 0.7005 11 6 4.4716 6.0792 1.6100 12 6 4.3037 5.8823 2.9512 13 6 3.4538 4.8897 3.4241 14 6 2.7687 4.0896 2.5564 15 6 2.9248 4.2709 1.1776 16 6 2.1975 -1.2688 0.0006 17 1 3.2737 -1.0962 -0.0120 18 6 1.7890 -2.1463 1.2133 19 6 2.0704 -3.5790 0.7135 20 7 2.0611 -3.5384 -0.7561 21 6 2.2902 -4.6037 -1.5854 22 1 2.2606 -4.4703 -2.6567 23 6 2.5604 -5.8552 -1.0491 24 7 2.5969 -6.0178 0.2565 25 14 2.8736 -7.3084 -2.1804 26 1 2.7768 -6.8648 -3.5943 27 1 4.2314 -7.8520 -1.9235 28 1 1.8609 -8.3636 -1.9226 29 6 1.7642 -2.1605 -1.1897 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 0.7586 2.5302 0.8892 34 1 0.7591 2.5298 -0.8907 35 1 5.4485 5.6410 -1.8068 36 1 3.9167 6.2212 -2.5034 37 1 4.6371 7.0644 -1.1111 38 1 5.1355 6.8539 1.2557 39 1 4.8379 6.5057 3.6528 40 1 3.3378 4.7472 4.4883 41 1 2.1104 3.3201 2.9318 42 1 2.4041 -1.9132 2.0824 43 1 0.7318 -2.0162 1.4446 44 1 3.0459 -3.9107 1.0690 45 1 1.2952 -4.2558 1.0728 46 1 2.7854 -6.8924 0.6313 47 1 0.6975 -2.0451 -1.3817 48 1 2.3401 -1.9100 -2.0807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033081434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:22 Heat of formation + Delta-G solvation = 93.911363 kcal Electronic energy + Delta-G solvation = -29429.245695 eV Core-core repulsion = 25486.812837 eV Total energy + Delta-G solvation = -3942.432859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.48960 -39.79146 -37.48074 -37.23856 -34.78888 -34.27376 -32.19578 -30.64528 -30.41150 -29.93599 -29.08506 -27.53965 -26.59755 -25.73916 -24.33886 -23.14057 -22.09970 -21.15695 -20.11380 -19.71182 -18.68628 -17.29420 -17.22797 -17.03029 -16.87817 -15.90846 -15.48895 -15.46482 -15.31005 -14.63607 -14.39032 -14.24936 -14.07612 -13.73730 -13.42382 -13.20293 -13.10459 -12.88070 -12.72811 -12.52112 -12.36660 -12.22038 -12.04556 -11.92776 -11.80965 -11.70080 -11.24560 -10.93117 -10.85200 -10.81726 -10.73801 -10.26864 -10.17241 -10.05631 -9.81030 -9.70180 -9.55023 -8.82068 -8.61884 -8.33435 -8.01006 -6.83169 -5.70571 -3.04535 0.78126 1.34397 2.15465 2.26823 2.75697 3.19904 3.41280 3.46922 3.49314 3.63847 4.11955 4.28284 4.42434 4.51738 4.64217 4.75810 4.79874 4.94087 4.98468 5.10990 5.15708 5.19884 5.21700 5.31639 5.35094 5.41604 5.45194 5.56339 5.61540 5.63999 5.72243 5.75632 5.82125 5.90942 6.14579 6.22248 6.27902 6.32588 6.34159 6.51429 6.60595 6.64141 6.71738 6.87309 6.97962 7.49567 7.55396 7.58863 7.62280 7.83280 8.25058 8.34154 9.22321 9.82176 10.47213 11.41117 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.002244 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.167493 B =12476.976122 C =12859.178501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.601 5.601 3 C 0.517 3.483 4 O -0.531 6.531 5 C -0.060 4.060 6 C 0.122 3.878 7 N -0.239 5.239 8 N -0.409 5.409 9 C 0.112 3.888 10 C 0.128 3.872 11 C -0.144 4.144 12 C -0.071 4.071 13 C -0.163 4.163 14 C -0.035 4.035 15 C -0.164 4.164 16 C 0.124 3.876 17 H 0.106 0.894 18 C -0.153 4.153 19 C 0.180 3.820 20 N -0.603 5.603 21 C -0.227 4.227 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.913 3.087 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.131 3.869 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.045 0.955 46 H 0.252 0.748 47 H 0.023 0.977 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 27.086 4.792 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.334 5.334 3 C 0.303 3.697 4 O -0.407 6.407 5 C -0.102 4.102 6 C -0.056 4.056 7 N -0.052 5.052 8 N -0.197 5.197 9 C -0.029 4.029 10 C 0.014 3.986 11 C -0.166 4.166 12 C -0.092 4.092 13 C -0.182 4.182 14 C -0.056 4.056 15 C -0.172 4.172 16 C 0.020 3.980 17 H 0.124 0.876 18 C -0.192 4.192 19 C 0.055 3.945 20 N -0.330 5.330 21 C -0.355 4.355 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.743 3.257 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.218 1.218 29 C 0.004 3.996 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.040 0.960 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.285 27.007 3.361 27.311 hybrid contribution 0.217 -0.820 0.190 0.869 sum -2.069 26.187 3.551 26.507 Atomic orbital electron populations 1.21844 0.79800 1.03265 1.02182 1.47782 1.06920 1.05857 1.72801 1.20196 0.88007 0.84693 0.76817 1.90740 1.13794 1.87054 1.49125 1.20091 0.95898 0.88217 1.06013 1.22656 0.97593 0.96299 0.89075 1.76535 1.04964 1.00410 1.23289 1.48052 1.39223 1.29718 1.02708 1.21724 0.95700 0.92033 0.93475 1.18810 0.97869 0.97395 0.84534 1.19773 1.03103 1.01575 0.92106 1.20695 0.96977 0.97152 0.94367 1.20646 0.99926 0.97877 0.99771 1.20359 0.97469 0.97417 0.90316 1.19690 1.03375 0.99931 0.94154 1.22454 0.97446 0.80926 0.97156 0.87647 1.23245 1.00398 0.98523 0.97000 1.21135 1.00976 0.89141 0.83295 1.44402 1.83384 1.03128 1.02098 1.19103 1.41058 0.86281 0.89057 0.90344 1.24812 1.01978 0.97631 0.96053 1.69967 1.55548 1.22364 1.09087 0.86029 0.77505 0.82575 0.79562 1.20498 1.21729 1.21751 1.21753 0.97295 0.85902 0.94641 0.92273 0.90111 0.91329 0.86651 0.86831 0.91227 0.89447 0.89917 0.85964 0.85469 0.85602 0.85610 0.91932 0.91993 0.93361 0.93655 0.93774 0.95986 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 8.99 59.85 0.54 1.30 16 2 N -0.60 -8.91 2.91 -171.47 -0.50 -9.41 16 3 C 0.52 7.97 7.67 -10.99 -0.08 7.88 16 4 O -0.53 -10.69 15.41 5.55 0.09 -10.60 16 5 C -0.06 -0.67 4.85 -29.04 -0.14 -0.82 16 6 C 0.12 1.68 5.93 -80.19 -0.48 1.21 16 7 N -0.24 -3.54 12.40 34.84 0.43 -3.11 16 8 N -0.41 -5.20 4.05 -65.47 -0.27 -5.47 16 9 C 0.11 0.90 11.40 59.85 0.68 1.58 16 10 C 0.13 1.61 6.87 -84.18 -0.58 1.04 16 11 C -0.14 -1.40 9.97 -39.79 -0.40 -1.80 16 12 C -0.07 -0.62 9.96 -39.91 -0.40 -1.01 16 13 C -0.16 -1.50 9.97 -39.95 -0.40 -1.90 16 14 C -0.04 -0.38 10.07 -39.58 -0.40 -0.78 16 15 C -0.16 -2.16 6.33 -105.21 -0.67 -2.83 16 16 C 0.12 2.33 3.45 -65.78 -0.23 2.10 16 17 H 0.11 2.27 7.01 -51.93 -0.36 1.90 16 18 C -0.15 -2.86 6.51 -24.89 -0.16 -3.02 16 19 C 0.18 4.38 5.37 -3.07 -0.02 4.36 16 20 N -0.60 -15.62 3.40 -170.04 -0.58 -16.20 16 21 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 24 N -0.92 -27.27 10.31 55.49 0.57 -26.69 16 25 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 C 0.13 2.79 6.81 -2.50 -0.02 2.77 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.08 0.90 6.21 -51.93 -0.32 0.58 16 32 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 33 H 0.12 0.89 7.40 -51.93 -0.38 0.51 16 34 H 0.11 1.04 8.11 -51.93 -0.42 0.62 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.03 6.20 -51.93 -0.32 0.71 16 44 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 45 H 0.05 1.20 7.51 -51.92 -0.39 0.81 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.02 0.45 7.10 -51.93 -0.37 0.08 16 48 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -36.97 389.77 -9.45 -46.42 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.06 Total: -1.31 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -2.99 Total: 3.17 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.34 Total: -60.87 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.97 -9.45 -46.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033081434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.328 kcal (2) G-P(sol) polarization free energy of solvation -36.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds