Wall clock time and date at job start Wed Apr 1 2020 03:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 119.99986 * 2 1 4 4 O 1.21288 * 119.99686 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00260 * 359.97438 * 3 2 1 6 6 C 1.50702 * 109.47256 * 180.02562 * 5 3 2 7 7 N 1.30243 * 126.10827 * 89.97620 * 6 5 3 8 8 N 1.39870 * 110.08549 * 180.02562 * 7 6 5 9 9 C 1.46500 * 125.46016 * 180.02562 * 8 7 6 10 10 C 1.37041 * 109.07848 * 0.02562 * 8 7 6 11 11 C 1.39281 * 133.84804 * 179.97438 * 10 8 7 12 12 C 1.36587 * 119.85307 * 180.02562 * 11 10 8 13 13 C 1.38965 * 120.81495 * 359.97228 * 12 11 10 14 14 C 1.36469 * 120.62719 * 0.02562 * 13 12 11 15 15 C 1.39943 * 119.63481 * 0.02562 * 14 13 12 16 16 C 1.46505 * 119.99815 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.88587 * 179.29898 * 16 2 1 18 18 C 1.55160 * 111.00304 * 303.18337 * 16 2 1 19 19 C 1.54326 * 102.93643 * 153.57694 * 18 16 2 20 20 N 1.47017 * 107.27538 * 337.80285 * 19 18 16 21 21 C 1.36932 * 125.65130 * 178.97978 * 20 19 18 22 22 H 1.07998 * 120.00518 * 179.97438 * 21 20 19 23 23 C 1.38812 * 119.99842 * 359.97404 * 21 20 19 24 24 N 1.31619 * 120.00144 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99982 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47109 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47375 * 119.99720 * 25 23 21 28 28 H 1.48507 * 109.47070 * 239.99854 * 25 23 21 29 29 C 1.47470 * 108.71998 * 358.97595 * 20 19 18 30 30 H 1.08998 * 109.47126 * 90.00296 * 1 2 3 31 31 H 1.09000 * 109.47178 * 210.00590 * 1 2 3 32 32 H 1.09003 * 109.46755 * 330.00650 * 1 2 3 33 33 H 1.08994 * 109.46762 * 60.00537 * 5 3 2 34 34 H 1.08998 * 109.47101 * 300.00648 * 5 3 2 35 35 H 1.08994 * 109.47534 * 269.98207 * 9 8 7 36 36 H 1.09003 * 109.46907 * 29.98126 * 9 8 7 37 37 H 1.09007 * 109.47261 * 149.97448 * 9 8 7 38 38 H 1.08002 * 120.07412 * 359.97330 * 11 10 8 39 39 H 1.08000 * 119.59865 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.69032 * 179.74591 * 13 12 11 41 41 H 1.07996 * 120.18086 * 179.97438 * 14 13 12 42 42 H 1.09000 * 110.71487 * 271.93484 * 18 16 2 43 43 H 1.08993 * 110.72042 * 35.03363 * 18 16 2 44 44 H 1.09000 * 109.88226 * 97.22410 * 19 18 16 45 45 H 1.09007 * 109.87730 * 218.23114 * 19 18 16 46 46 H 0.96999 * 120.00048 * 179.97438 * 24 23 21 47 47 H 1.08998 * 110.35080 * 265.25008 * 29 20 19 48 48 H 1.09008 * 110.40450 * 142.91423 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3648 3.6177 -0.0011 7 7 2.8639 4.2003 -1.0536 8 7 3.7378 5.2220 -0.6680 9 6 4.4827 6.0928 -1.5807 10 6 3.7856 5.2779 0.7005 11 6 4.4716 6.0792 1.6100 12 6 4.3037 5.8823 2.9512 13 6 3.4538 4.8897 3.4241 14 6 2.7687 4.0896 2.5564 15 6 2.9248 4.2709 1.1776 16 6 2.1975 -1.2688 0.0006 17 1 3.2737 -1.0962 -0.0120 18 6 1.7890 -2.1463 1.2133 19 6 2.0704 -3.5790 0.7135 20 7 2.0611 -3.5384 -0.7561 21 6 2.2902 -4.6037 -1.5854 22 1 2.2606 -4.4703 -2.6567 23 6 2.5604 -5.8552 -1.0491 24 7 2.5969 -6.0178 0.2565 25 14 2.8736 -7.3084 -2.1804 26 1 2.7768 -6.8648 -3.5943 27 1 4.2314 -7.8520 -1.9235 28 1 1.8609 -8.3636 -1.9226 29 6 1.7642 -2.1605 -1.1897 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 0.7586 2.5302 0.8892 34 1 0.7591 2.5298 -0.8907 35 1 5.4485 5.6410 -1.8068 36 1 3.9167 6.2212 -2.5034 37 1 4.6371 7.0644 -1.1111 38 1 5.1355 6.8539 1.2557 39 1 4.8379 6.5057 3.6528 40 1 3.3378 4.7472 4.4883 41 1 2.1104 3.3201 2.9318 42 1 2.4041 -1.9132 2.0824 43 1 0.7318 -2.0162 1.4446 44 1 3.0459 -3.9107 1.0690 45 1 1.2952 -4.2558 1.0728 46 1 2.7854 -6.8924 0.6313 47 1 0.6975 -2.0451 -1.3817 48 1 2.3401 -1.9100 -2.0807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033081434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:21 Heat of formation + Delta-G solvation = 70.061764 kcal Electronic energy + Delta-G solvation = -29430.279892 eV Core-core repulsion = 25486.812837 eV Total energy + Delta-G solvation = -3943.467055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.31656 -41.05981 -38.99384 -38.10720 -36.26483 -35.14057 -34.07791 -31.64589 -31.29998 -30.85030 -30.67056 -29.05127 -27.71213 -26.79465 -26.10411 -23.92208 -22.93907 -22.40425 -22.03430 -20.81562 -19.86791 -18.94518 -18.42463 -18.02179 -17.82539 -17.16386 -16.68455 -16.48330 -16.35607 -16.09630 -15.91776 -15.36587 -14.97473 -14.92732 -14.49811 -14.23881 -14.14917 -14.06793 -13.97155 -13.83320 -13.61492 -13.50075 -13.20206 -12.94831 -12.91817 -12.77168 -12.72218 -12.61053 -12.29074 -12.07154 -11.99524 -11.95057 -11.82096 -11.67683 -11.47915 -11.09000 -10.74477 -10.72818 -9.64084 -9.62390 -8.92206 -8.79166 -7.87220 -5.23835 0.00438 0.58491 1.29685 1.44917 1.46445 1.47138 1.56668 1.59542 2.05594 2.49229 2.88014 3.31192 3.32387 3.49498 3.59684 3.67995 3.72254 3.93260 4.00217 4.11569 4.17319 4.20819 4.28917 4.34087 4.38131 4.45264 4.48839 4.56790 4.57749 4.62702 4.64306 4.68736 4.76204 4.82695 4.96404 4.96710 5.07788 5.10631 5.16841 5.40516 5.41959 5.53660 5.57350 5.62927 5.63402 5.72183 5.93706 6.14367 6.16779 6.43650 6.62039 7.07407 7.16113 7.73094 8.36917 9.23124 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.002244 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.167493 B =12476.976122 C =12859.178501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.596 5.596 3 C 0.516 3.484 4 O -0.587 6.587 5 C -0.050 4.050 6 C 0.106 3.894 7 N -0.278 5.278 8 N -0.419 5.419 9 C 0.103 3.897 10 C 0.104 3.896 11 C -0.151 4.151 12 C -0.069 4.069 13 C -0.163 4.163 14 C -0.052 4.052 15 C -0.194 4.194 16 C 0.140 3.860 17 H 0.071 0.929 18 C -0.132 4.132 19 C 0.188 3.812 20 N -0.626 5.626 21 C -0.244 4.244 22 H 0.081 0.919 23 C -0.065 4.065 24 N -0.950 5.950 25 Si 0.980 3.020 26 H -0.267 1.267 27 H -0.293 1.293 28 H -0.287 1.287 29 C 0.132 3.868 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.156 0.844 34 H 0.137 0.863 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.152 0.848 41 H 0.140 0.860 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.007 0.993 45 H 0.019 0.981 46 H 0.248 0.752 47 H 0.046 0.954 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.519 29.324 5.556 30.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.328 5.328 3 C 0.304 3.696 4 O -0.467 6.467 5 C -0.091 4.091 6 C -0.072 4.072 7 N -0.091 5.091 8 N -0.207 5.207 9 C -0.037 4.037 10 C -0.010 4.010 11 C -0.173 4.173 12 C -0.089 4.089 13 C -0.182 4.182 14 C -0.073 4.073 15 C -0.202 4.202 16 C 0.034 3.966 17 H 0.090 0.910 18 C -0.171 4.171 19 C 0.062 3.938 20 N -0.352 5.352 21 C -0.372 4.372 22 H 0.099 0.901 23 C -0.258 4.258 24 N -0.599 5.599 25 Si 0.808 3.192 26 H -0.191 1.191 27 H -0.220 1.220 28 H -0.214 1.214 29 C 0.006 3.994 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.174 0.826 34 H 0.155 0.845 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.164 0.836 39 H 0.178 0.822 40 H 0.170 0.830 41 H 0.158 0.842 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.025 0.975 45 H 0.037 0.963 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.737 29.289 4.107 29.811 hybrid contribution 0.702 -1.426 -0.024 1.589 sum -3.035 27.863 4.083 28.324 Atomic orbital electron populations 1.22221 0.76600 1.05410 1.03675 1.47774 1.08632 1.04088 1.72320 1.20943 0.87526 0.85880 0.75219 1.90720 1.16528 1.87844 1.51600 1.20195 0.95302 0.84571 1.08988 1.23064 0.98018 0.96803 0.89266 1.76410 1.06331 1.01796 1.24591 1.48367 1.39180 1.29699 1.03487 1.22013 0.95297 0.92711 0.93634 1.19285 0.98657 0.98238 0.84847 1.20163 1.03079 1.01754 0.92289 1.21159 0.96314 0.96926 0.94520 1.21062 0.99029 0.97205 1.00941 1.20655 0.98444 0.98421 0.89748 1.20051 1.04320 1.00704 0.95080 1.21884 0.96200 0.82659 0.95841 0.91030 1.23044 1.02577 0.94471 0.96962 1.20880 0.97828 0.92155 0.82894 1.44685 1.83404 1.04504 1.02654 1.19468 1.40713 0.87379 0.89679 0.90127 1.25674 1.02273 1.00310 0.97565 1.70181 1.56467 1.22567 1.10690 0.84986 0.76863 0.79014 0.78303 1.19108 1.22047 1.21416 1.21865 0.98207 0.84217 0.95089 0.91139 0.90322 0.86863 0.82631 0.84505 0.91266 0.88871 0.87081 0.83601 0.82168 0.83042 0.84216 0.90933 0.88791 0.97488 0.96304 0.94259 0.93609 0.95439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 8.99 127.77 1.15 2.22 16 2 N -0.60 -16.60 2.91 -814.81 -2.37 -18.97 16 3 C 0.52 15.35 7.67 87.66 0.67 16.02 16 4 O -0.59 -24.17 15.41 -3.05 -0.05 -24.22 16 5 C -0.05 -0.99 4.85 29.10 0.14 -0.85 16 6 C 0.11 2.86 5.93 44.79 0.27 3.12 16 7 N -0.28 -8.28 12.40 -43.69 -0.54 -8.82 16 8 N -0.42 -10.62 4.05 -361.05 -1.46 -12.09 16 9 C 0.10 1.61 11.40 127.77 1.46 3.07 16 10 C 0.10 2.55 6.87 39.21 0.27 2.82 16 11 C -0.15 -2.67 9.97 22.13 0.22 -2.44 16 12 C -0.07 -1.00 9.96 22.06 0.22 -0.78 16 13 C -0.16 -2.59 9.97 22.03 0.22 -2.38 16 14 C -0.05 -1.06 10.07 22.27 0.22 -0.84 16 15 C -0.19 -4.98 6.33 -20.24 -0.13 -5.11 16 16 C 0.14 5.24 3.45 46.38 0.16 5.40 16 17 H 0.07 3.20 7.01 -2.39 -0.02 3.19 16 18 C -0.13 -4.87 6.51 31.78 0.21 -4.66 16 19 C 0.19 9.45 5.37 86.73 0.47 9.91 16 20 N -0.63 -33.15 3.40 -691.87 -2.35 -35.50 16 21 C -0.24 -14.05 10.28 84.03 0.86 -13.19 16 22 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 23 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 24 N -0.95 -58.05 10.31 21.65 0.22 -57.83 16 25 Si 0.98 46.70 29.55 68.60 2.03 48.72 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 29 C 0.13 5.63 6.81 86.85 0.59 6.23 16 30 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 31 H 0.08 1.45 6.21 -2.39 -0.01 1.43 16 32 H 0.11 0.99 6.44 -2.39 -0.02 0.97 16 33 H 0.16 1.77 7.40 -2.39 -0.02 1.75 16 34 H 0.14 2.09 8.11 -2.39 -0.02 2.07 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.09 2.89 6.20 -2.39 -0.01 2.88 16 44 H 0.01 0.39 7.38 -2.39 -0.02 0.38 16 45 H 0.02 1.03 7.51 -2.38 -0.02 1.01 16 46 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.05 1.76 7.10 -2.39 -0.02 1.74 16 48 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -86.30 389.77 3.91 -82.39 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.97 Total: 11.09 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 7.46 Total: 15.22 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -6.50 Total: -133.20 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -86.30 3.91 -82.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033081434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.453 kcal (2) G-P(sol) polarization free energy of solvation -86.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds