Wall clock time and date at job start Wed Apr 1 2020 01:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47459 * 2 1 4 4 C 1.34774 * 119.99978 * 97.47475 * 3 2 1 5 5 O 1.21578 * 120.00227 * 185.59128 * 4 3 2 6 6 C 1.47658 * 119.99780 * 5.59103 * 4 3 2 7 7 C 1.41779 * 120.36812 * 134.50312 * 6 4 3 8 8 C 1.34549 * 120.14548 * 179.97438 * 7 6 4 9 9 N 1.36722 * 120.95069 * 0.02562 * 8 7 6 10 10 C 1.36436 * 132.26190 * 180.02562 * 9 8 7 11 11 C 1.50694 * 126.38840 * 0.03102 * 10 9 8 12 12 C 1.35447 * 107.22066 * 179.76404 * 10 9 8 13 13 N 1.33180 * 108.62238 * 0.24587 * 12 10 9 14 14 C 1.32655 * 109.12937 * 359.97438 * 13 12 10 15 15 C 1.38444 * 120.37195 * 314.91980 * 6 4 3 16 16 C 1.46503 * 120.00135 * 277.48083 * 3 2 1 17 17 H 1.09003 * 110.63743 * 1.67960 * 16 3 2 18 18 C 1.55149 * 110.71954 * 125.02076 * 16 3 2 19 19 C 1.54912 * 101.57838 * 153.86386 * 18 16 3 20 20 N 1.47417 * 104.83361 * 322.98992 * 19 18 16 21 21 C 1.36935 * 125.64876 * 204.16161 * 20 19 18 22 22 H 1.07999 * 120.00566 * 179.97438 * 21 20 19 23 23 C 1.38817 * 120.00008 * 359.96167 * 21 20 19 24 24 N 1.31619 * 119.99996 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99834 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47294 * 60.00117 * 25 23 21 27 27 H 1.48509 * 109.46879 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47138 * 299.99394 * 25 23 21 29 29 C 1.47018 * 108.70367 * 24.12770 * 20 19 18 30 30 H 1.08991 * 109.46970 * 69.19947 * 1 2 3 31 31 H 1.09006 * 109.46983 * 189.19955 * 1 2 3 32 32 H 1.09000 * 109.46507 * 309.19316 * 1 2 3 33 33 H 1.09005 * 109.47201 * 239.99991 * 2 1 3 34 34 H 1.08999 * 109.47247 * 120.00826 * 2 1 3 35 35 H 1.07999 * 119.92937 * 0.02562 * 7 6 4 36 36 H 1.07996 * 119.51989 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.47407 * 269.71012 * 11 10 9 38 38 H 1.09004 * 109.47527 * 29.70628 * 11 10 9 39 39 H 1.09003 * 109.47715 * 149.71091 * 11 10 9 40 40 H 1.08004 * 125.68930 * 180.23831 * 12 10 9 41 41 H 1.08000 * 120.45194 * 359.49125 * 15 6 4 42 42 H 1.08999 * 111.00688 * 271.93525 * 18 16 3 43 43 H 1.08999 * 111.00941 * 35.79491 * 18 16 3 44 44 H 1.09005 * 110.36598 * 204.14696 * 19 18 16 45 45 H 1.09006 * 110.45891 * 81.87648 * 19 18 16 46 46 H 0.97000 * 119.99898 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.88347 * 239.52029 * 29 20 19 48 48 H 1.09010 * 109.88462 * 118.35801 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3862 1.9658 1.1573 5 8 2.6945 3.1418 1.1731 6 6 2.4147 1.1782 2.4059 7 6 3.5202 1.2736 3.2885 8 6 3.5413 0.5543 4.4253 9 7 2.5060 -0.2774 4.7505 10 6 2.2880 -1.0964 5.8197 11 6 3.2099 -1.2971 6.9947 12 6 1.0856 -1.6908 5.6309 13 7 0.5744 -1.2600 4.4790 14 6 1.4192 -0.4020 3.9224 15 6 1.3663 0.3318 2.7237 16 6 2.1069 2.1269 -1.2579 17 1 1.7452 1.5219 -2.0894 18 6 1.3207 3.4609 -1.1617 19 6 2.0626 4.3349 -2.2036 20 7 3.4806 3.9529 -2.0754 21 6 4.5516 4.7328 -2.4217 22 1 5.5565 4.3603 -2.2882 23 6 4.3458 6.0021 -2.9446 24 7 3.1211 6.4559 -3.1080 25 14 5.8068 7.0662 -3.4162 26 1 6.6071 6.3744 -4.4584 27 1 5.3219 8.3658 -3.9467 28 1 6.6527 7.3043 -2.2192 29 6 3.5546 2.5964 -1.5136 30 1 -0.3633 0.3649 -0.9606 31 1 -0.3633 -1.0145 0.1643 32 1 -0.3632 0.6494 0.7965 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 4.3468 1.9258 3.0482 36 1 4.3883 0.6350 5.0905 37 1 3.8931 -2.1200 6.7842 38 1 3.7818 -0.3854 7.1678 39 1 2.6219 -1.5311 7.8822 40 1 0.6193 -2.3965 6.3025 41 1 0.5140 0.2453 2.0661 42 1 0.2768 3.3204 -1.4420 43 1 1.4011 3.8907 -0.1632 44 1 1.9322 5.3924 -1.9735 45 1 1.7008 4.1188 -3.2089 46 1 2.9772 7.3427 -3.4737 47 1 4.1099 2.6133 -0.5758 48 1 4.0415 1.9272 -2.2231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033832008.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:27 Heat of formation + Delta-G solvation = 108.767026 kcal Electronic energy + Delta-G solvation = -30335.683238 eV Core-core repulsion = 26393.894569 eV Total energy + Delta-G solvation = -3941.788669 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.12918 -40.35043 -37.59830 -36.52916 -35.76546 -34.13050 -32.40322 -31.54801 -30.59012 -30.14255 -29.03241 -27.58628 -26.61828 -24.61472 -24.08395 -23.71020 -22.83381 -21.47501 -20.95768 -20.09297 -18.93809 -17.73807 -17.33103 -16.89473 -16.73532 -16.36863 -15.83542 -15.33196 -15.18440 -14.54557 -14.45991 -14.01073 -13.96316 -13.74462 -13.65765 -13.46139 -13.25177 -13.13704 -12.93620 -12.81553 -12.26468 -12.08288 -12.02377 -11.90842 -11.65562 -11.46095 -11.42685 -10.99954 -10.90615 -10.73852 -10.68925 -10.49428 -10.37370 -10.07023 -9.77062 -9.50717 -9.18439 -9.09428 -8.55496 -8.36803 -7.97850 -6.71451 -5.54818 -2.95530 0.30170 0.86258 2.26146 2.46720 2.79984 2.99547 3.33918 3.46568 3.50170 3.51869 3.90288 4.14487 4.30523 4.42955 4.58393 4.64004 4.68615 4.80176 4.91604 5.05862 5.09531 5.14391 5.20097 5.28379 5.35842 5.44036 5.53466 5.56051 5.58727 5.65029 5.66186 5.72964 5.81893 5.82869 5.92109 6.09247 6.13507 6.30575 6.32622 6.57112 6.61205 6.67461 6.74225 6.80538 7.18784 7.51047 7.55816 7.65816 7.72675 7.96863 8.33257 8.47963 9.32077 9.93250 10.58344 11.49024 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.002717 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.086285 B =10301.815534 C =11308.575554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.091 3.909 3 N -0.596 5.596 4 C 0.554 3.446 5 O -0.493 6.493 6 C -0.102 4.102 7 C -0.094 4.094 8 C 0.045 3.955 9 N -0.351 5.351 10 C -0.069 4.069 11 C -0.072 4.072 12 C 0.034 3.966 13 N -0.482 5.482 14 C 0.212 3.788 15 C -0.056 4.056 16 C 0.136 3.864 17 H 0.091 0.909 18 C -0.159 4.159 19 C 0.158 3.842 20 N -0.596 5.596 21 C -0.216 4.216 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.923 5.923 25 Si 0.914 3.086 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.286 1.286 29 C 0.134 3.866 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.181 0.819 41 H 0.169 0.831 42 H 0.052 0.948 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.009 0.991 46 H 0.251 0.749 47 H 0.031 0.969 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 -19.163 17.167 25.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.032 4.032 3 N -0.329 5.329 4 C 0.340 3.660 5 O -0.367 6.367 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.076 4.076 9 N -0.024 5.024 10 C -0.183 4.183 11 C -0.130 4.130 12 C -0.120 4.120 13 N -0.202 5.202 14 C -0.030 4.030 15 C -0.076 4.076 16 C 0.033 3.967 17 H 0.109 0.891 18 C -0.198 4.198 19 C 0.033 3.967 20 N -0.322 5.322 21 C -0.345 4.345 22 H 0.092 0.908 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.745 3.255 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.007 3.993 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.198 0.802 41 H 0.186 0.814 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.124 0.876 45 H 0.027 0.973 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -3.972 -18.546 16.766 25.315 hybrid contribution 1.482 0.612 0.081 1.605 sum -2.491 -17.934 16.847 24.732 Atomic orbital electron populations 1.22362 0.95714 1.02418 1.03050 1.21863 0.94637 0.82955 1.03744 1.47935 1.64163 1.13697 1.07057 1.17944 0.78484 0.86955 0.82622 1.90927 1.46054 1.14537 1.85155 1.20182 0.95692 0.98081 0.97136 1.20780 0.99269 0.99237 0.92198 1.21427 0.92375 0.94651 0.99170 1.42726 1.15296 1.27796 1.16556 1.21314 1.01607 1.01908 0.93487 1.20188 0.97447 1.02333 0.93050 1.22338 0.92400 1.01642 0.95627 1.70664 1.27658 1.12634 1.09205 1.20703 0.85868 1.01635 0.94744 1.21343 1.00170 0.92834 0.93259 1.22245 0.98209 0.93117 0.83127 0.89108 1.23505 0.97277 0.95353 1.03671 1.21847 0.81913 1.00430 0.92543 1.44286 1.02708 1.11380 1.73808 1.18995 0.85905 0.95352 1.34204 0.90762 1.24763 0.96687 0.97500 1.01807 1.69789 1.17954 1.18232 1.51228 0.86161 0.81469 0.79772 0.78141 1.21338 1.21621 1.21249 1.21462 0.92985 0.88305 0.96514 0.91430 0.91097 0.91916 0.90098 0.89839 0.82191 0.81583 0.90860 0.91663 0.89684 0.80200 0.81365 0.92896 0.89416 0.87559 0.97255 0.93798 0.95081 0.96443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.15 37.16 0.34 -1.31 16 2 C 0.09 0.97 5.54 -4.04 -0.02 0.95 16 3 N -0.60 -8.81 2.54 -165.20 -0.42 -9.23 16 4 C 0.55 9.04 6.36 -12.42 -0.08 8.96 16 5 O -0.49 -10.34 13.40 5.30 0.07 -10.27 16 6 C -0.10 -1.33 5.13 -104.62 -0.54 -1.87 16 7 C -0.09 -1.05 9.67 -39.53 -0.38 -1.44 16 8 C 0.04 0.42 10.80 -16.68 -0.18 0.24 16 9 N -0.35 -3.80 2.94 -58.55 -0.17 -3.98 16 10 C -0.07 -0.63 7.02 -81.54 -0.57 -1.20 16 11 C -0.07 -0.37 10.30 36.00 0.37 0.00 16 12 C 0.03 0.33 11.75 -17.96 -0.21 0.12 16 13 N -0.48 -6.16 11.31 -12.80 -0.14 -6.31 16 14 C 0.21 2.65 7.79 -155.96 -1.22 1.44 16 15 C -0.06 -0.67 7.50 -38.60 -0.29 -0.96 16 16 C 0.14 2.43 3.44 -66.10 -0.23 2.20 16 17 H 0.09 1.44 7.97 -51.93 -0.41 1.03 16 18 C -0.16 -3.26 6.39 -24.59 -0.16 -3.42 16 19 C 0.16 4.03 5.89 -2.53 -0.01 4.01 16 20 N -0.60 -16.03 3.39 -170.07 -0.58 -16.61 16 21 C -0.22 -6.29 10.27 -15.06 -0.15 -6.45 16 22 H 0.07 2.09 7.83 -52.49 -0.41 1.68 16 23 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 24 N -0.92 -27.86 10.09 55.49 0.56 -27.30 16 25 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 C 0.13 2.97 6.52 -3.07 -0.02 2.95 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.63 6.33 -51.93 -0.33 0.30 16 33 H 0.08 0.77 8.11 -51.93 -0.42 0.34 16 34 H 0.08 0.83 5.09 -51.93 -0.26 0.57 16 35 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.17 0.97 8.03 -52.49 -0.42 0.55 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.18 1.18 8.06 -52.48 -0.42 0.75 16 41 H 0.17 1.85 3.71 -52.49 -0.19 1.66 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.98 5.62 -51.93 -0.29 1.69 16 44 H 0.11 3.09 5.87 -51.93 -0.31 2.78 16 45 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.03 0.73 6.45 -51.93 -0.33 0.39 16 48 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -36.03 378.11 -10.21 -46.23 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.75 Total: 0.20 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -3.45 Total: 3.77 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.75 Total: -63.43 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.07 Total: -10.27 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.03 -10.21 -46.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033832008.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.001 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds