Wall clock time and date at job start Wed Apr 1 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47193 * 2 1 4 4 C 1.34779 * 119.99876 * 98.62450 * 3 2 1 5 5 O 1.21583 * 120.00243 * 187.33126 * 4 3 2 6 6 C 1.47655 * 119.99901 * 7.34015 * 4 3 2 7 7 C 1.41779 * 120.37342 * 329.96498 * 6 4 3 8 8 C 1.34536 * 120.14737 * 179.97438 * 7 6 4 9 9 N 1.36721 * 120.95632 * 0.02562 * 8 7 6 10 10 C 1.36439 * 132.26797 * 180.02562 * 9 8 7 11 11 C 1.50708 * 126.38378 * 0.02562 * 10 9 8 12 12 C 1.35439 * 107.22411 * 179.74642 * 10 9 8 13 13 N 1.33187 * 108.62229 * 0.23085 * 12 10 9 14 14 C 1.32654 * 109.12556 * 359.97438 * 13 12 10 15 15 C 1.38442 * 120.37103 * 150.32425 * 6 4 3 16 16 C 1.46491 * 120.00102 * 278.62974 * 3 2 1 17 17 H 1.08998 * 110.88994 * 19.40472 * 16 3 2 18 18 C 1.55164 * 111.00324 * 255.52439 * 16 3 2 19 19 C 1.54326 * 102.94106 * 277.42575 * 18 16 3 20 20 N 1.47014 * 107.27438 * 337.80890 * 19 18 16 21 21 C 1.36936 * 125.65188 * 178.98325 * 20 19 18 22 22 H 1.07999 * 120.00474 * 185.22988 * 21 20 19 23 23 C 1.38813 * 119.99749 * 5.24047 * 21 20 19 24 24 N 1.31626 * 120.00005 * 5.31088 * 23 21 20 25 25 Si 1.86802 * 120.00059 * 185.31531 * 23 21 20 26 26 H 1.48504 * 109.46794 * 94.99648 * 25 23 21 27 27 H 1.48498 * 109.47076 * 214.99263 * 25 23 21 28 28 H 1.48492 * 109.46939 * 334.99507 * 25 23 21 29 29 C 1.47427 * 108.70373 * 358.93976 * 20 19 18 30 30 H 1.09001 * 109.47460 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47615 * 300.00301 * 1 2 3 32 32 H 1.09003 * 109.47106 * 59.99877 * 1 2 3 33 33 H 1.08996 * 109.47612 * 240.00370 * 2 1 3 34 34 H 1.09001 * 109.46740 * 119.99747 * 2 1 3 35 35 H 1.07996 * 119.92448 * 0.02562 * 7 6 4 36 36 H 1.08005 * 119.52405 * 179.97438 * 8 7 6 37 37 H 1.08998 * 109.46653 * 269.70706 * 11 10 9 38 38 H 1.08997 * 109.47374 * 29.70891 * 11 10 9 39 39 H 1.09000 * 109.46647 * 149.71263 * 11 10 9 40 40 H 1.07999 * 125.69253 * 180.24803 * 12 10 9 41 41 H 1.07993 * 120.45516 * 359.55825 * 15 6 4 42 42 H 1.08995 * 110.71386 * 35.79154 * 18 16 3 43 43 H 1.09005 * 110.71520 * 159.06719 * 18 16 3 44 44 H 1.09000 * 109.87882 * 97.22444 * 19 18 16 45 45 H 1.08995 * 109.87873 * 218.38575 * 19 18 16 46 46 H 0.96989 * 119.99807 * 180.02562 * 24 23 21 47 47 H 1.09002 * 110.36991 * 265.28900 * 29 20 19 48 48 H 1.09003 * 110.37038 * 142.96864 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4080 1.9583 1.1540 5 8 2.6861 3.1416 1.1785 6 6 2.4972 1.1532 2.3886 7 6 1.6409 0.0399 2.5819 8 6 1.7264 -0.6908 3.7083 9 7 2.6330 -0.3776 4.6826 10 6 2.9151 -0.9458 5.8905 11 6 2.2412 -2.1533 6.4897 12 6 3.9180 -0.2261 6.4479 13 7 4.2460 0.7612 5.6163 14 6 3.4781 0.6933 4.5367 15 6 3.4129 1.4815 3.3736 16 6 2.0830 2.1353 -1.2543 17 1 1.4396 1.6867 -2.0111 18 6 3.5451 2.2459 -1.7619 19 6 4.1034 3.4345 -0.9513 20 7 2.9552 4.2394 -0.5095 21 6 3.0224 5.3736 0.2549 22 1 2.1149 5.8478 0.5985 23 6 4.2569 5.9139 0.5879 24 7 5.3583 5.3987 0.0840 25 14 4.3550 7.3722 1.7513 26 1 4.5914 6.8866 3.1346 27 1 5.4729 8.2590 1.3402 28 1 3.0789 8.1299 1.7038 29 6 1.7194 3.6239 -1.0267 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 0.9189 -0.2227 1.8229 36 1 1.0689 -1.5366 3.8453 37 1 1.3877 -1.8336 7.0876 38 1 1.8994 -2.8121 5.6915 39 1 2.9492 -2.6873 7.1235 40 1 4.3756 -0.4204 7.4066 41 1 4.0755 2.3247 3.2460 42 1 4.0998 1.3340 -1.5412 43 1 3.5670 2.4632 -2.8298 44 1 4.6534 3.0667 -0.0851 45 1 4.7585 4.0371 -1.5804 46 1 6.2209 5.7761 0.3170 47 1 1.4276 4.0912 -1.9672 48 1 0.9170 3.7106 -0.2941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033832009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:31 Heat of formation + Delta-G solvation = 164.375419 kcal Electronic energy + Delta-G solvation = -31483.215741 eV Core-core repulsion = 27543.838433 eV Total energy + Delta-G solvation = -3939.377308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.84691 -40.15373 -37.51758 -35.99708 -35.44227 -33.80284 -32.34892 -31.23153 -30.46875 -29.70956 -28.84043 -27.50763 -26.56392 -24.58142 -23.77430 -23.46268 -22.62649 -21.16345 -20.91100 -19.83014 -18.49188 -17.63572 -17.34959 -16.69951 -16.40083 -16.07322 -15.21685 -15.12753 -14.79436 -14.47767 -14.34017 -14.04923 -13.63496 -13.57669 -13.49160 -13.32694 -13.21317 -12.81241 -12.48933 -12.32991 -12.07596 -11.91188 -11.84046 -11.73636 -11.61220 -11.54203 -11.10333 -10.72914 -10.66624 -10.64584 -10.47647 -10.06212 -9.98298 -9.92336 -9.73432 -9.39769 -8.89081 -8.76747 -8.23544 -7.97956 -7.69247 -6.25262 -5.40251 -2.63558 0.67334 1.07899 2.52534 2.72752 3.27848 3.32696 3.59069 3.64471 3.65766 3.90548 4.27397 4.36532 4.52049 4.69765 4.76500 4.78640 4.86388 5.00751 5.09694 5.20491 5.25714 5.29102 5.36551 5.46310 5.48334 5.55365 5.59082 5.64416 5.68942 5.70066 5.76196 5.90960 6.01588 6.05694 6.13193 6.23450 6.25083 6.45746 6.52665 6.59611 6.62355 6.65190 6.79005 7.02368 7.26659 7.74910 7.86764 7.87163 7.96056 8.05592 8.54442 9.03955 9.51345 10.12913 10.78556 11.72173 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.010787 B = 0.004497 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.039654 B = 6225.440972 C = 8202.444570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 N -0.604 5.604 4 C 0.508 3.492 5 O -0.400 6.400 6 C -0.108 4.108 7 C -0.144 4.144 8 C 0.034 3.966 9 N -0.352 5.352 10 C -0.078 4.078 11 C -0.068 4.068 12 C 0.032 3.968 13 N -0.482 5.482 14 C 0.219 3.781 15 C -0.015 4.015 16 C 0.133 3.867 17 H 0.081 0.919 18 C -0.161 4.161 19 C 0.182 3.818 20 N -0.558 5.558 21 C -0.174 4.174 22 H 0.068 0.932 23 C -0.015 4.015 24 N -0.927 5.927 25 Si 0.901 3.099 26 H -0.293 1.293 27 H -0.296 1.296 28 H -0.285 1.285 29 C 0.136 3.864 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.181 0.819 36 H 0.160 0.840 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.179 0.821 41 H 0.164 0.836 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.030 0.970 45 H 0.050 0.950 46 H 0.245 0.755 47 H 0.024 0.976 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 -20.683 4.226 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.047 4.047 3 N -0.341 5.341 4 C 0.291 3.709 5 O -0.265 6.265 6 C -0.118 4.118 7 C -0.163 4.163 8 C -0.088 4.088 9 N -0.025 5.025 10 C -0.192 4.192 11 C -0.126 4.126 12 C -0.121 4.121 13 N -0.201 5.201 14 C -0.022 4.022 15 C -0.037 4.037 16 C 0.029 3.971 17 H 0.099 0.901 18 C -0.200 4.200 19 C 0.058 3.942 20 N -0.282 5.282 21 C -0.303 4.303 22 H 0.086 0.914 23 C -0.210 4.210 24 N -0.577 5.577 25 Si 0.733 3.267 26 H -0.221 1.221 27 H -0.223 1.223 28 H -0.211 1.211 29 C 0.008 3.992 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.197 0.803 36 H 0.178 0.822 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.196 0.804 41 H 0.182 0.818 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.048 0.952 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.041 0.959 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.774 -19.246 4.488 22.047 hybrid contribution -0.501 -0.161 0.653 0.839 sum -10.275 -19.407 5.141 22.553 Atomic orbital electron populations 1.22331 0.96492 1.01917 1.03105 1.22260 0.93882 0.84594 1.03932 1.47609 1.66721 1.12773 1.07026 1.18324 0.80800 0.88904 0.82824 1.91679 1.41544 1.11448 1.81827 1.20377 0.97634 0.96579 0.97182 1.21984 1.01997 0.95212 0.97143 1.21405 0.95481 1.02942 0.88930 1.42723 1.24708 1.21707 1.13362 1.21223 1.06122 1.03791 0.88098 1.20134 1.00175 0.92195 1.00096 1.22326 0.96513 0.93085 1.00222 1.70712 1.24749 1.23240 1.01392 1.20770 0.92895 0.91002 0.97576 1.20736 0.97743 0.97609 0.87562 1.22276 0.97076 0.93595 0.84195 0.90076 1.23375 0.95799 1.00783 1.00050 1.21086 0.89683 0.88080 0.95379 1.44147 0.99243 1.26827 1.58024 1.18797 0.92117 0.97770 1.21571 0.91429 1.24573 0.95528 0.99522 1.01329 1.69933 0.96670 1.43360 1.47779 0.86233 0.76644 0.82376 0.81418 1.22081 1.22281 1.21118 1.21696 0.91833 0.89297 0.96346 0.91701 0.91962 0.91556 0.91112 0.88196 0.80274 0.82220 0.91117 0.91913 0.89886 0.80423 0.81843 0.92408 0.91732 0.95155 0.93156 0.94414 0.95894 0.94313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 9.13 37.15 0.34 -1.13 16 2 C 0.08 0.79 5.57 -4.04 -0.02 0.77 16 3 N -0.60 -9.28 2.56 -164.85 -0.42 -9.70 16 4 C 0.51 9.57 6.79 -12.41 -0.08 9.49 16 5 O -0.40 -9.70 9.03 5.29 0.05 -9.66 16 6 C -0.11 -1.75 5.61 -104.62 -0.59 -2.34 16 7 C -0.14 -1.67 7.44 -39.54 -0.29 -1.96 16 8 C 0.03 0.36 10.80 -16.68 -0.18 0.18 16 9 N -0.35 -4.78 2.94 -58.54 -0.17 -4.95 16 10 C -0.08 -0.92 7.02 -81.54 -0.57 -1.49 16 11 C -0.07 -0.47 10.30 36.01 0.37 -0.10 16 12 C 0.03 0.43 11.75 -17.96 -0.21 0.22 16 13 N -0.48 -8.48 11.31 -12.80 -0.14 -8.62 16 14 C 0.22 3.75 7.79 -155.96 -1.22 2.53 16 15 C -0.02 -0.28 9.70 -38.60 -0.37 -0.65 16 16 C 0.13 2.20 3.75 -65.78 -0.25 1.96 16 17 H 0.08 1.07 8.05 -51.93 -0.42 0.66 16 18 C -0.16 -2.98 6.61 -24.89 -0.16 -3.14 16 19 C 0.18 4.55 4.37 -3.07 -0.01 4.54 16 20 N -0.56 -14.43 1.71 -170.07 -0.29 -14.72 16 21 C -0.17 -5.04 8.36 -15.06 -0.13 -5.17 16 22 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 23 C -0.02 -0.45 5.46 -17.43 -0.10 -0.55 16 24 N -0.93 -28.68 10.41 55.49 0.58 -28.10 16 25 Si 0.90 23.94 29.56 -169.99 -5.02 18.92 16 26 H -0.29 -7.95 7.11 56.52 0.40 -7.54 16 27 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 C 0.14 2.83 5.99 -2.53 -0.02 2.81 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.56 7.15 -51.93 -0.37 0.19 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 34 H 0.10 0.97 3.91 -52.43 -0.21 0.76 16 35 H 0.18 1.60 2.69 -52.49 -0.14 1.46 16 36 H 0.16 1.04 8.03 -52.48 -0.42 0.61 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.16 3.38 7.93 -52.49 -0.42 2.96 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.03 0.86 7.12 -51.93 -0.37 0.49 16 45 H 0.05 1.42 7.09 -51.93 -0.37 1.05 16 46 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.04 0.83 7.70 -51.93 -0.40 0.43 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -36.83 372.41 -10.19 -47.02 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.88 Total: -1.76 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -3.49 Total: 5.96 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.45 Total: -66.10 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.05 Total: -9.66 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -5.02 Total: 18.92 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.83 -10.19 -47.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033832009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.400 kcal (2) G-P(sol) polarization free energy of solvation -36.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds